Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:95564838-105506108

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829 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9043 X 95629832 to 95630366 534 + pseudogene predicted gene 9043
Zc4h2 X 95639193 to 95658509 19316 - protein coding gene zinc finger, C4H2 domain containing
Tssr163805 X 95658310 to 95658344 34 - TSS region transcription start site region 163805
Tssr163806 X 95658379 to 95658390 11 - TSS region transcription start site region 163806
Tssr163807 X 95658392 to 95658412 20 - TSS region transcription start site region 163807
Tssr163808 X 95658416 to 95658447 31 - TSS region transcription start site region 163808
Gm18108 X 95681479 to 95682864 1385 - pseudogene predicted gene, 18108
Gm29889 X 95683751 to 95692806 9055 - pseudogene predicted gene, 29889
Cpgi22842 X 95711551 to 95712058 507 CpG island CpG island 22842
Tssr161499 X 95711641 to 95711685 44 + TSS region transcription start site region 161499
Zc3h12b X 95711678 to 95932637 220959 + protein coding gene zinc finger CCCH-type containing 12B
Tssr161500 X 95711686 to 95711712 26 + TSS region transcription start site region 161500
1700010D01Rik X 95732590 to 95733265 675 - lincRNA gene RIKEN cDNA 1700010D01 gene
Gm18239 X 95794799 to 95795433 634 - pseudogene predicted gene, 18239
Las1l X 95935335 to 95956962 21627 - protein coding gene LAS1-like (S. cerevisiae)
Cpgi22843 X 95956585 to 95957107 522 CpG island CpG island 22843
Tssr163809 X 95956890 to 95956918 28 - TSS region transcription start site region 163809
Tssr163810 X 95956919 to 95956948 29 - TSS region transcription start site region 163810
Tssr163811 X 95965029 to 95965038 9 - TSS region transcription start site region 163811
Tssr163812 X 95965046 to 95965059 13 - TSS region transcription start site region 163812
Tssr163813 X 95965070 to 95965093 23 - TSS region transcription start site region 163813
Tssr163814 X 95965192 to 95965230 38 - TSS region transcription start site region 163814
Tssr161501 X 95968900 to 95968907 7 + TSS region transcription start site region 161501
Tssr163815 X 95970083 to 95970092 9 - TSS region transcription start site region 163815
Gm41897 X 95981913 to 95986705 4792 - lncRNA gene predicted gene, 41897
Gm19635 X 95992961 to 95994067 1106 + pseudogene predicted gene, 19635
Cpgi22844 X 96095840 to 96096333 493 CpG island CpG island 22844
Tssr161502 X 96095992 to 96096003 11 + TSS region transcription start site region 161502
Tssr161503 X 96096007 to 96096016 9 + TSS region transcription start site region 161503
Tssr161504 X 96096034 to 96096056 22 + TSS region transcription start site region 161504
Msn X 96096045 to 96168553 72508 + protein coding gene moesin
Tssr161505 X 96096058 to 96096077 19 + TSS region transcription start site region 161505
Tssr161506 X 96096082 to 96096116 34 + TSS region transcription start site region 161506
Tssr161507 X 96096117 to 96096128 11 + TSS region transcription start site region 161507
Tssr161508 X 96097530 to 96097535 5 + TSS region transcription start site region 161508
Tssr161509 X 96097822 to 96097826 4 + TSS region transcription start site region 161509
Tssr161510 X 96099459 to 96099465 6 + TSS region transcription start site region 161510
Gm30427 X 96105199 to 96109114 3915 + lncRNA gene predicted gene, 30427
Tssr161511 X 96107045 to 96107051 6 + TSS region transcription start site region 161511
Tssr161512 X 96112082 to 96112098 16 + TSS region transcription start site region 161512
Tssr161513 X 96112193 to 96112210 17 + TSS region transcription start site region 161513
Tssr161514 X 96115425 to 96115444 19 + TSS region transcription start site region 161514
Tssr161515 X 96115836 to 96115860 24 + TSS region transcription start site region 161515
Psmb7-ps1 X 96148800 to 96149199 399 + pseudogene proteasome (prosome, macropain) subunit, beta type 7, pseudogene 1
Gm24718 X 96150837 to 96150972 135 - snoRNA gene predicted gene, 24718
Tssr161516 X 96152543 to 96152628 85 + TSS region transcription start site region 161516
Tssr161517 X 96152695 to 96152764 69 + TSS region transcription start site region 161517
Tssr161518 X 96152888 to 96152892 4 + TSS region transcription start site region 161518
Tssr161519 X 96155451 to 96155501 50 + TSS region transcription start site region 161519
Tssr161520 X 96155545 to 96155588 43 + TSS region transcription start site region 161520
Tssr161521 X 96160083 to 96160137 54 + TSS region transcription start site region 161521
Tssr161522 X 96160141 to 96160182 41 + TSS region transcription start site region 161522
Tssr163816 X 96163403 to 96163448 45 - TSS region transcription start site region 163816
Tssr161523 X 96163429 to 96163457 28 + TSS region transcription start site region 161523
Tssr161524 X 96163764 to 96163781 17 + TSS region transcription start site region 161524
Tssr161525 X 96165368 to 96165405 37 + TSS region transcription start site region 161525
Tssr163817 X 96165430 to 96165473 43 - TSS region transcription start site region 163817
Tssr161526 X 96165962 to 96165974 12 + TSS region transcription start site region 161526
Tssr161527 X 96166038 to 96166054 16 + TSS region transcription start site region 161527
Tssr161528 X 96166061 to 96166074 13 + TSS region transcription start site region 161528
Tssr161529 X 96166090 to 96166105 15 + TSS region transcription start site region 161529
Tssr161530 X 96166466 to 96166478 12 + TSS region transcription start site region 161530
Tssr161531 X 96166484 to 96166495 11 + TSS region transcription start site region 161531
Tssr161532 X 96166551 to 96166564 13 + TSS region transcription start site region 161532
Tssr161533 X 96166565 to 96166574 9 + TSS region transcription start site region 161533
Tssr161534 X 96166589 to 96166600 11 + TSS region transcription start site region 161534
Tssr161535 X 96166618 to 96166629 11 + TSS region transcription start site region 161535
Tssr161536 X 96166633 to 96166644 11 + TSS region transcription start site region 161536
Tssr161537 X 96166767 to 96166792 25 + TSS region transcription start site region 161537
Tssr161538 X 96166800 to 96166841 41 + TSS region transcription start site region 161538
Tssr163818 X 96166808 to 96166820 12 - TSS region transcription start site region 163818
Tssr161539 X 96166880 to 96166906 26 + TSS region transcription start site region 161539
Tssr163819 X 96166890 to 96166921 31 - TSS region transcription start site region 163819
Tssr161540 X 96166940 to 96166955 15 + TSS region transcription start site region 161540
Tssr163820 X 96166990 to 96167015 25 - TSS region transcription start site region 163820
Tssr161541 X 96167070 to 96167084 14 + TSS region transcription start site region 161541
Tssr161542 X 96167152 to 96167163 11 + TSS region transcription start site region 161542
Tssr161543 X 96167246 to 96167255 9 + TSS region transcription start site region 161543
Tssr161544 X 96167266 to 96167280 14 + TSS region transcription start site region 161544
Tssr161545 X 96167345 to 96167356 11 + TSS region transcription start site region 161545
Tssr161546 X 96167368 to 96167379 11 + TSS region transcription start site region 161546
Tssr161547 X 96167392 to 96167413 21 + TSS region transcription start site region 161547
Tssr161548 X 96167432 to 96167443 11 + TSS region transcription start site region 161548
Tssr161549 X 96167497 to 96167521 24 + TSS region transcription start site region 161549
Tssr161550 X 96167551 to 96167563 12 + TSS region transcription start site region 161550
Tssr161551 X 96167565 to 96167611 46 + TSS region transcription start site region 161551
Tssr161552 X 96167727 to 96167740 13 + TSS region transcription start site region 161552
Tssr161553 X 96167808 to 96167896 88 + TSS region transcription start site region 161553
Tssr161554 X 96167903 to 96167920 17 + TSS region transcription start site region 161554
Tssr161555 X 96167962 to 96167973 11 + TSS region transcription start site region 161555
Tssr161556 X 96167993 to 96168008 15 + TSS region transcription start site region 161556
Tssr161557 X 96168023 to 96168034 11 + TSS region transcription start site region 161557
Tssr161558 X 96168392 to 96168405 13 + TSS region transcription start site region 161558
Tssr161559 X 96168423 to 96168453 30 + TSS region transcription start site region 161559
Tssr161560 X 96168457 to 96168470 13 + TSS region transcription start site region 161560
Gm14925 X 96194051 to 96194488 437 + pseudogene predicted gene 14925
Gm9051 X 96224308 to 96225727 1419 - pseudogene predicted gene 9051
F630028O10Rik X 96239926 to 96243636 3710 + antisense lncRNA gene RIKEN cDNA F630028O10 gene
Tssr161561 X 96239935 to 96239948 13 + TSS region transcription start site region 161561
Tssr161562 X 96240489 to 96240491 2 + TSS region transcription start site region 161562
Mir223 X 96242817 to 96242926 109 + miRNA gene microRNA 223
Tssr161563 X 96242906 to 96242911 5 + TSS region transcription start site region 161563
Vsig4 X 96247203 to 96293438 46235 - protein coding gene V-set and immunoglobulin domain containing 4
Tssr161564 X 96255554 to 96255565 11 + TSS region transcription start site region 161564
Tssr161565 X 96255571 to 96255601 30 + TSS region transcription start site region 161565
Tssr161566 X 96255603 to 96255694 91 + TSS region transcription start site region 161566
Tssr161567 X 96255712 to 96255721 9 + TSS region transcription start site region 161567
Tssr163821 X 96293425 to 96293453 28 - TSS region transcription start site region 163821
Tssr163822 X 96293456 to 96293465 9 - TSS region transcription start site region 163822
Hsf3 X 96306178 to 96456294 150116 - protein coding gene heat shock transcription factor 3
Gm18171 X 96308355 to 96309014 659 - pseudogene predicted gene, 18171
Tssr161568 X 96334327 to 96334349 22 + TSS region transcription start site region 161568
Tssr161569 X 96341733 to 96341742 9 + TSS region transcription start site region 161569
Gm14933 X 96358727 to 96359681 954 - pseudogene predicted gene 14933
Tssr161570 X 96455397 to 96455411 14 + TSS region transcription start site region 161570
Tssr161571 X 96455412 to 96455450 38 + TSS region transcription start site region 161571
Heph X 96455436 to 96574485 119049 + protein coding gene hephaestin
Tssr161572 X 96455496 to 96455497 1 + TSS region transcription start site region 161572
Tssr5650 X 96455502 to 96455505 3 + TSS region transcription start site region 5650
Tssr161573 X 96455511 to 96455522 11 + TSS region transcription start site region 161573
Tssr161574 X 96455529 to 96455599 70 + TSS region transcription start site region 161574
Tssr161575 X 96455612 to 96455636 24 + TSS region transcription start site region 161575
Tssr161576 X 96456344 to 96456356 12 + TSS region transcription start site region 161576
Tssr161577 X 96456362 to 96456388 26 + TSS region transcription start site region 161577
Tssr161578 X 96456404 to 96456441 37 + TSS region transcription start site region 161578
Tssr161579 X 96456490 to 96456502 12 + TSS region transcription start site region 161579
Rpl17-ps8 X 96484859 to 96485479 620 + pseudogene ribosomal protein L17, pseudogene 8
Gm14935 X 96548629 to 96550333 1704 + pseudogene predicted gene 14935
Tssr161580 X 96713459 to 96713475 16 + TSS region transcription start site region 161580
Gpr165 X 96713468 to 96719388 5920 + protein coding gene G protein-coupled receptor 165
Tssr161581 X 96713486 to 96713497 11 + TSS region transcription start site region 161581
Tssr161582 X 96713508 to 96713520 12 + TSS region transcription start site region 161582
Tssr161583 X 96713547 to 96713554 7 + TSS region transcription start site region 161583
Gm16394 X 96885509 to 96887873 2364 - pseudogene predicted gene 16394
1700125M20Rik X 96934091 to 96934660 569 unclassified gene RIKEN cDNA 1700125M20 gene
Gm14803 X 96934690 to 96935224 534 - pseudogene predicted gene 14803
Tssr163823 X 96935244 to 96935250 6 - TSS region transcription start site region 163823
Gm9059 X 96966257 to 96966648 391 - pseudogene predicted gene 9059
Gm39527 X 96966832 to 96991054 24222 + lncRNA gene predicted gene, 39527
Gm9060 X 97047716 to 97048511 795 - pseudogene predicted gene 9060
Pgr15l X 97072596 to 97082104 9508 + protein coding gene G protein-coupled receptor 15-like
Gm14800 X 97161655 to 97162689 1034 - pseudogene predicted gene 14800
Eda2r X 97333840 to 97377216 43376 - protein coding gene ectodysplasin A2 receptor
Gm18111 X 97365500 to 97366173 673 + pseudogene predicted gene, 18111
Tssr163824 X 97376456 to 97376465 9 - TSS region transcription start site region 163824
Tssr163825 X 97376494 to 97376508 14 - TSS region transcription start site region 163825
Tssr163826 X 97377163 to 97377187 24 - TSS region transcription start site region 163826
Tssr163827 X 97377190 to 97377195 5 - TSS region transcription start site region 163827
Tssr161584 X 97526986 to 97526987 1 + TSS region transcription start site region 161584
Gm9062 X 97826379 to 97827105 726 + pseudogene predicted gene 9062
Gm14802 X 98040375 to 98042259 1884 + pseudogene predicted gene 14802
DXMit114 X 98146308 to 98146453 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 114
Modc2 X 98146308 to 98146453 145 QTL modifier of Odc2
Tssr161585 X 98148719 to 98148782 63 + TSS region transcription start site region 161585
Ar X 98148769 to 98323215 174446 + protein coding gene androgen receptor
Tssr161586 X 98149666 to 98149714 48 + TSS region transcription start site region 161586
Cpgi22845 X 98149887 to 98150134 247 CpG island CpG island 22845
Cpgi22846 X 98150541 to 98151064 523 CpG island CpG island 22846
Tssr163828 X 98259743 to 98259773 30 - TSS region transcription start site region 163828
Gm14811 X 98483790 to 98483906 116 + pseudogene predicted gene 14811
Gm14815 X 98513900 to 98514387 487 - pseudogene predicted gene 14815
Gm14810 X 98544397 to 98544882 485 - pseudogene predicted gene 14810
Ophn1 X 98554277 to 98891025 336748 - protein coding gene oligophrenin 1
Tssr163829 X 98599451 to 98599458 7 - TSS region transcription start site region 163829
Gm27554 X 98727315 to 98727412 97 - miRNA gene predicted gene, 27554
Tssr163830 X 98757500 to 98757508 8 - TSS region transcription start site region 163830
Tssr163831 X 98757514 to 98757525 11 - TSS region transcription start site region 163831
Gm26000 X 98814775 to 98814881 106 + snRNA gene predicted gene, 26000
Tssr163832 X 98853388 to 98853394 6 - TSS region transcription start site region 163832
Tssr163833 X 98888396 to 98888401 5 - TSS region transcription start site region 163833
Cpgi22847 X 98890059 to 98891195 1136 CpG island CpG island 22847
Tssr163834 X 98890223 to 98890235 12 - TSS region transcription start site region 163834
Tssr163835 X 98890430 to 98890488 58 - TSS region transcription start site region 163835
Tssr163836 X 98890538 to 98890561 23 - TSS region transcription start site region 163836
Tssr163837 X 98890566 to 98890583 17 - TSS region transcription start site region 163837
Tssr163838 X 98890619 to 98890638 19 - TSS region transcription start site region 163838
Tssr163839 X 98890913 to 98890991 78 - TSS region transcription start site region 163839
Tssr163840 X 98891008 to 98891047 39 - TSS region transcription start site region 163840
Tssr161587 X 98936314 to 98936318 4 + TSS region transcription start site region 161587
Yipf6 X 98936321 to 98949021 12700 + protein coding gene Yip1 domain family, member 6
Cpgi22848 X 98936825 to 98938494 1669 CpG island CpG island 22848
Tssr161588 X 98937468 to 98937538 70 + TSS region transcription start site region 161588
Tssr161589 X 98937748 to 98937796 48 + TSS region transcription start site region 161589
Tssr161590 X 98938178 to 98938198 20 + TSS region transcription start site region 161590
Tssr161591 X 98938200 to 98938229 29 + TSS region transcription start site region 161591
Tssr161592 X 98948595 to 98948599 4 + TSS region transcription start site region 161592
Gm14813 X 98962084 to 98962478 394 - pseudogene predicted gene 14813
Tssr161593 X 99003224 to 99003288 64 + TSS region transcription start site region 161593
Stard8 X 99003248 to 99074728 71480 + protein coding gene START domain containing 8
Tssr161594 X 99003328 to 99003339 11 + TSS region transcription start site region 161594
Tssr163841 X 99030580 to 99030589 9 - TSS region transcription start site region 163841
DXDcr2 X 99035899 to 99035994 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 2
Cpgi22849 X 99042600 to 99043134 534 CpG island CpG island 22849
Tssr161595 X 99042604 to 99042613 9 + TSS region transcription start site region 161595
Tssr161596 X 99042620 to 99042661 41 + TSS region transcription start site region 161596
Tssr161597 X 99042989 to 99043017 28 + TSS region transcription start site region 161597
Tssr161598 X 99044003 to 99044016 13 + TSS region transcription start site region 161598
Gm5760 X 99081401 to 99082402 1001 - pseudogene predicted gene 5760
Cpgi22850 X 99135690 to 99137244 1554 CpG island CpG island 22850
Tssr163842 X 99135946 to 99135950 4 - TSS region transcription start site region 163842