Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:94822888-97482892

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36695 X 94827768 to 94858939 31171 + lncRNA gene predicted gene, 36695
DXMit113b X 94833381 to 94833476 95 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 113b
Cpgi22837 X 94990577 to 94990820 243 CpG island CpG island 22837
Gm371 X 94997439 to 94998683 1244 - pseudogene predicted pseudogene 371
Tssr163795 X 94999007 to 94999018 11 - TSS region transcription start site region 163795
Spin4 X 95022510 to 95026682 4172 - protein coding gene spindlin family, member 4
Cpgi22838 X 95025995 to 95026815 820 CpG island CpG island 22838
Tssr163796 X 95026671 to 95026701 30 - TSS region transcription start site region 163796
Arhgef9 X 95048930 to 95196851 147921 - protein coding gene CDC42 guanine nucleotide exchange factor (GEF) 9
5730407O05Rik X 95159095 to 95160855 1760 unclassified gene RIKEN cDNA 5730407O05 gene
Tssr163797 X 95166343 to 95166426 83 - TSS region transcription start site region 163797
Cpgi22839 X 95166449 to 95166611 162 CpG island CpG island 22839
Cpgi22840 X 95196401 to 95196617 216 CpG island CpG island 22840
Tssr163798 X 95196450 to 95196519 69 - TSS region transcription start site region 163798
Tssr163799 X 95196604 to 95196694 90 - TSS region transcription start site region 163799
Gm6092 X 95211186 to 95211777 591 - pseudogene predicted gene 6092
Tssr163800 X 95211788 to 95211802 14 - TSS region transcription start site region 163800
Gm14807 X 95252916 to 95253898 982 - pseudogene predicted gene 14807
Gm3712 X 95321317 to 95321823 506 - pseudogene predicted gene 3712
Tssr161496 X 95325136 to 95325139 3 + TSS region transcription start site region 161496
Gm14806 X 95381861 to 95382436 575 - pseudogene predicted gene 14806
Amer1 X 95420313 to 95444840 24527 - protein coding gene APC membrane recruitment 1
Cpgi22841 X 95444406 to 95445020 614 CpG island CpG island 22841
Tssr163801 X 95444765 to 95444777 12 - TSS region transcription start site region 163801
Tssr163802 X 95444789 to 95444829 40 - TSS region transcription start site region 163802
Gm18664 X 95467664 to 95468166 502 - pseudogene predicted gene, 18664
Asb12 X 95470201 to 95557987 87786 - protein coding gene ankyrin repeat and SOCS box-containing 12
Tssr163803 X 95478076 to 95478087 11 - TSS region transcription start site region 163803
Tssr163804 X 95478107 to 95478137 30 - TSS region transcription start site region 163804
Tssr161497 X 95558099 to 95558108 9 + TSS region transcription start site region 161497
Pfn5 X 95558104 to 95558803 699 + protein coding gene profilin 5
Tssr161498 X 95558193 to 95558196 3 + TSS region transcription start site region 161498
Gm9043 X 95629832 to 95630366 534 + pseudogene predicted gene 9043
Zc4h2 X 95639193 to 95658509 19316 - protein coding gene zinc finger, C4H2 domain containing
Tssr163805 X 95658310 to 95658344 34 - TSS region transcription start site region 163805
Tssr163806 X 95658379 to 95658390 11 - TSS region transcription start site region 163806
Tssr163807 X 95658392 to 95658412 20 - TSS region transcription start site region 163807
Tssr163808 X 95658416 to 95658447 31 - TSS region transcription start site region 163808
Gm18108 X 95681479 to 95682864 1385 - pseudogene predicted gene, 18108
Gm29889 X 95683751 to 95692806 9055 - pseudogene predicted gene, 29889
Cpgi22842 X 95711551 to 95712058 507 CpG island CpG island 22842
Tssr161499 X 95711641 to 95711685 44 + TSS region transcription start site region 161499
Zc3h12b X 95711678 to 95932637 220959 + protein coding gene zinc finger CCCH-type containing 12B
Tssr161500 X 95711686 to 95711712 26 + TSS region transcription start site region 161500
1700010D01Rik X 95732590 to 95733265 675 - lincRNA gene RIKEN cDNA 1700010D01 gene
Gm18239 X 95794799 to 95795433 634 - pseudogene predicted gene, 18239
Las1l X 95935335 to 95956962 21627 - protein coding gene LAS1-like (S. cerevisiae)
Cpgi22843 X 95956585 to 95957107 522 CpG island CpG island 22843
Tssr163809 X 95956890 to 95956918 28 - TSS region transcription start site region 163809
Tssr163810 X 95956919 to 95956948 29 - TSS region transcription start site region 163810
Tssr163811 X 95965029 to 95965038 9 - TSS region transcription start site region 163811
Tssr163812 X 95965046 to 95965059 13 - TSS region transcription start site region 163812
Tssr163813 X 95965070 to 95965093 23 - TSS region transcription start site region 163813
Tssr163814 X 95965192 to 95965230 38 - TSS region transcription start site region 163814
Tssr161501 X 95968900 to 95968907 7 + TSS region transcription start site region 161501
Tssr163815 X 95970083 to 95970092 9 - TSS region transcription start site region 163815
Gm41897 X 95981913 to 95986705 4792 - lncRNA gene predicted gene, 41897
Gm19635 X 95992961 to 95994067 1106 + pseudogene predicted gene, 19635
Cpgi22844 X 96095840 to 96096333 493 CpG island CpG island 22844
Tssr161502 X 96095992 to 96096003 11 + TSS region transcription start site region 161502
Tssr161503 X 96096007 to 96096016 9 + TSS region transcription start site region 161503
Tssr161504 X 96096034 to 96096056 22 + TSS region transcription start site region 161504
Msn X 96096045 to 96168553 72508 + protein coding gene moesin
Tssr161505 X 96096058 to 96096077 19 + TSS region transcription start site region 161505
Tssr161506 X 96096082 to 96096116 34 + TSS region transcription start site region 161506
Tssr161507 X 96096117 to 96096128 11 + TSS region transcription start site region 161507
Tssr161508 X 96097530 to 96097535 5 + TSS region transcription start site region 161508
Tssr161509 X 96097822 to 96097826 4 + TSS region transcription start site region 161509
Tssr161510 X 96099459 to 96099465 6 + TSS region transcription start site region 161510
Gm30427 X 96105199 to 96109114 3915 + lncRNA gene predicted gene, 30427
Tssr161511 X 96107045 to 96107051 6 + TSS region transcription start site region 161511
Tssr161512 X 96112082 to 96112098 16 + TSS region transcription start site region 161512
Tssr161513 X 96112193 to 96112210 17 + TSS region transcription start site region 161513
Tssr161514 X 96115425 to 96115444 19 + TSS region transcription start site region 161514
Tssr161515 X 96115836 to 96115860 24 + TSS region transcription start site region 161515
Psmb7-ps1 X 96148800 to 96149199 399 + pseudogene proteasome (prosome, macropain) subunit, beta type 7, pseudogene 1
Gm24718 X 96150837 to 96150972 135 - snoRNA gene predicted gene, 24718
Tssr161516 X 96152543 to 96152628 85 + TSS region transcription start site region 161516
Tssr161517 X 96152695 to 96152764 69 + TSS region transcription start site region 161517
Tssr161518 X 96152888 to 96152892 4 + TSS region transcription start site region 161518
Tssr161519 X 96155451 to 96155501 50 + TSS region transcription start site region 161519
Tssr161520 X 96155545 to 96155588 43 + TSS region transcription start site region 161520
Tssr161521 X 96160083 to 96160137 54 + TSS region transcription start site region 161521
Tssr161522 X 96160141 to 96160182 41 + TSS region transcription start site region 161522
Tssr163816 X 96163403 to 96163448 45 - TSS region transcription start site region 163816
Tssr161523 X 96163429 to 96163457 28 + TSS region transcription start site region 161523
Tssr161524 X 96163764 to 96163781 17 + TSS region transcription start site region 161524
Tssr161525 X 96165368 to 96165405 37 + TSS region transcription start site region 161525
Tssr163817 X 96165430 to 96165473 43 - TSS region transcription start site region 163817
Tssr161526 X 96165962 to 96165974 12 + TSS region transcription start site region 161526
Tssr161527 X 96166038 to 96166054 16 + TSS region transcription start site region 161527
Tssr161528 X 96166061 to 96166074 13 + TSS region transcription start site region 161528
Tssr161529 X 96166090 to 96166105 15 + TSS region transcription start site region 161529
Tssr161530 X 96166466 to 96166478 12 + TSS region transcription start site region 161530
Tssr161531 X 96166484 to 96166495 11 + TSS region transcription start site region 161531
Tssr161532 X 96166551 to 96166564 13 + TSS region transcription start site region 161532
Tssr161533 X 96166565 to 96166574 9 + TSS region transcription start site region 161533
Tssr161534 X 96166589 to 96166600 11 + TSS region transcription start site region 161534
Tssr161535 X 96166618 to 96166629 11 + TSS region transcription start site region 161535
Tssr161536 X 96166633 to 96166644 11 + TSS region transcription start site region 161536
Tssr161537 X 96166767 to 96166792 25 + TSS region transcription start site region 161537
Tssr161538 X 96166800 to 96166841 41 + TSS region transcription start site region 161538
Tssr163818 X 96166808 to 96166820 12 - TSS region transcription start site region 163818
Tssr161539 X 96166880 to 96166906 26 + TSS region transcription start site region 161539
Tssr163819 X 96166890 to 96166921 31 - TSS region transcription start site region 163819
Tssr161540 X 96166940 to 96166955 15 + TSS region transcription start site region 161540
Tssr163820 X 96166990 to 96167015 25 - TSS region transcription start site region 163820
Tssr161541 X 96167070 to 96167084 14 + TSS region transcription start site region 161541
Tssr161542 X 96167152 to 96167163 11 + TSS region transcription start site region 161542
Tssr161543 X 96167246 to 96167255 9 + TSS region transcription start site region 161543
Tssr161544 X 96167266 to 96167280 14 + TSS region transcription start site region 161544
Tssr161545 X 96167345 to 96167356 11 + TSS region transcription start site region 161545
Tssr161546 X 96167368 to 96167379 11 + TSS region transcription start site region 161546
Tssr161547 X 96167392 to 96167413 21 + TSS region transcription start site region 161547
Tssr161548 X 96167432 to 96167443 11 + TSS region transcription start site region 161548
Tssr161549 X 96167497 to 96167521 24 + TSS region transcription start site region 161549
Tssr161550 X 96167551 to 96167563 12 + TSS region transcription start site region 161550
Tssr161551 X 96167565 to 96167611 46 + TSS region transcription start site region 161551
Tssr161552 X 96167727 to 96167740 13 + TSS region transcription start site region 161552
Tssr161553 X 96167808 to 96167896 88 + TSS region transcription start site region 161553
Tssr161554 X 96167903 to 96167920 17 + TSS region transcription start site region 161554
Tssr161555 X 96167962 to 96167973 11 + TSS region transcription start site region 161555
Tssr161556 X 96167993 to 96168008 15 + TSS region transcription start site region 161556
Tssr161557 X 96168023 to 96168034 11 + TSS region transcription start site region 161557
Tssr161558 X 96168392 to 96168405 13 + TSS region transcription start site region 161558
Tssr161559 X 96168423 to 96168453 30 + TSS region transcription start site region 161559
Tssr161560 X 96168457 to 96168470 13 + TSS region transcription start site region 161560
Gm14925 X 96194051 to 96194488 437 + pseudogene predicted gene 14925
Gm9051 X 96224308 to 96225727 1419 - pseudogene predicted gene 9051
F630028O10Rik X 96239926 to 96243636 3710 + antisense lncRNA gene RIKEN cDNA F630028O10 gene
Tssr161561 X 96239935 to 96239948 13 + TSS region transcription start site region 161561
Tssr161562 X 96240489 to 96240491 2 + TSS region transcription start site region 161562
Mir223 X 96242817 to 96242926 109 + miRNA gene microRNA 223
Tssr161563 X 96242906 to 96242911 5 + TSS region transcription start site region 161563
Vsig4 X 96247203 to 96293438 46235 - protein coding gene V-set and immunoglobulin domain containing 4
Tssr161564 X 96255554 to 96255565 11 + TSS region transcription start site region 161564
Tssr161565 X 96255571 to 96255601 30 + TSS region transcription start site region 161565
Tssr161566 X 96255603 to 96255694 91 + TSS region transcription start site region 161566
Tssr161567 X 96255712 to 96255721 9 + TSS region transcription start site region 161567
Tssr163821 X 96293425 to 96293453 28 - TSS region transcription start site region 163821
Tssr163822 X 96293456 to 96293465 9 - TSS region transcription start site region 163822
Hsf3 X 96306178 to 96456294 150116 - protein coding gene heat shock transcription factor 3
Gm18171 X 96308355 to 96309014 659 - pseudogene predicted gene, 18171
Tssr161568 X 96334327 to 96334349 22 + TSS region transcription start site region 161568
Tssr161569 X 96341733 to 96341742 9 + TSS region transcription start site region 161569
Gm14933 X 96358727 to 96359681 954 - pseudogene predicted gene 14933
Tssr161570 X 96455397 to 96455411 14 + TSS region transcription start site region 161570
Tssr161571 X 96455412 to 96455450 38 + TSS region transcription start site region 161571
Heph X 96455436 to 96574485 119049 + protein coding gene hephaestin
Tssr161572 X 96455496 to 96455497 1 + TSS region transcription start site region 161572
Tssr5650 X 96455502 to 96455505 3 + TSS region transcription start site region 5650
Tssr161573 X 96455511 to 96455522 11 + TSS region transcription start site region 161573
Tssr161574 X 96455529 to 96455599 70 + TSS region transcription start site region 161574
Tssr161575 X 96455612 to 96455636 24 + TSS region transcription start site region 161575
Tssr161576 X 96456344 to 96456356 12 + TSS region transcription start site region 161576
Tssr161577 X 96456362 to 96456388 26 + TSS region transcription start site region 161577
Tssr161578 X 96456404 to 96456441 37 + TSS region transcription start site region 161578
Tssr161579 X 96456490 to 96456502 12 + TSS region transcription start site region 161579
Rpl17-ps8 X 96484859 to 96485479 620 + pseudogene ribosomal protein L17, pseudogene 8
Gm14935 X 96548629 to 96550333 1704 + pseudogene predicted gene 14935
Tssr161580 X 96713459 to 96713475 16 + TSS region transcription start site region 161580
Gpr165 X 96713468 to 96719388 5920 + protein coding gene G protein-coupled receptor 165
Tssr161581 X 96713486 to 96713497 11 + TSS region transcription start site region 161581
Tssr161582 X 96713508 to 96713520 12 + TSS region transcription start site region 161582
Tssr161583 X 96713547 to 96713554 7 + TSS region transcription start site region 161583
Gm16394 X 96885509 to 96887873 2364 - pseudogene predicted gene 16394
1700125M20Rik X 96934091 to 96934660 569 unclassified gene RIKEN cDNA 1700125M20 gene
Gm14803 X 96934690 to 96935224 534 - pseudogene predicted gene 14803
Tssr163823 X 96935244 to 96935250 6 - TSS region transcription start site region 163823
Gm9059 X 96966257 to 96966648 391 - pseudogene predicted gene 9059
Gm39527 X 96966832 to 96991054 24222 + lncRNA gene predicted gene, 39527
Gm9060 X 97047716 to 97048511 795 - pseudogene predicted gene 9060
Pgr15l X 97072596 to 97082104 9508 + protein coding gene G protein-coupled receptor 15-like
Gm14800 X 97161655 to 97162689 1034 - pseudogene predicted gene 14800
Eda2r X 97333840 to 97377216 43376 - protein coding gene ectodysplasin A2 receptor
Gm18111 X 97365500 to 97366173 673 + pseudogene predicted gene, 18111
Tssr163824 X 97376456 to 97376465 9 - TSS region transcription start site region 163824
Tssr163825 X 97376494 to 97376508 14 - TSS region transcription start site region 163825
Tssr163826 X 97377163 to 97377187 24 - TSS region transcription start site region 163826
Tssr163827 X 97377190 to 97377195 5 - TSS region transcription start site region 163827
Wght12 X 151000000 to 95000000 -56000000 QTL weight 12
Lgth14 X 151000000 to 95000000 -56000000 QTL body length 14