Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:9461788-10562679

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cybb X 9435252 to 9487766 52514 - protein coding gene cytochrome b-245, beta polypeptide
Tssr162941 X 9461803 to 9461826 23 - TSS region transcription start site region 162941
Tssr162942 X 9461863 to 9461874 11 - TSS region transcription start site region 162942
Tssr162943 X 9461929 to 9461942 13 - TSS region transcription start site region 162943
Tssr162944 X 9462053 to 9462065 12 - TSS region transcription start site region 162944
Tssr162945 X 9462714 to 9462732 18 - TSS region transcription start site region 162945
Tssr162946 X 9462762 to 9462795 33 - TSS region transcription start site region 162946
Tssr162947 X 9462879 to 9462890 11 - TSS region transcription start site region 162947
Tssr162948 X 9463423 to 9463440 17 - TSS region transcription start site region 162948
Tssr162949 X 9463466 to 9463478 12 - TSS region transcription start site region 162949
Tssr162950 X 9463498 to 9463510 12 - TSS region transcription start site region 162950
Tssr162951 X 9463803 to 9463814 11 - TSS region transcription start site region 162951
Tssr162952 X 9463839 to 9463849 10 - TSS region transcription start site region 162952
Tssr162953 X 9464080 to 9464091 11 - TSS region transcription start site region 162953
Tssr162954 X 9465296 to 9465319 23 - TSS region transcription start site region 162954
Tssr162955 X 9465400 to 9465411 11 - TSS region transcription start site region 162955
Tssr162956 X 9465632 to 9465648 16 - TSS region transcription start site region 162956
Tssr162957 X 9465672 to 9465762 90 - TSS region transcription start site region 162957
Tssr5588 X 9465736 to 9465750 14 + TSS region transcription start site region 5588
Tssr162958 X 9466727 to 9466731 4 - TSS region transcription start site region 162958
Tssr162959 X 9467104 to 9467192 88 - TSS region transcription start site region 162959
Tssr162960 X 9467231 to 9467240 9 - TSS region transcription start site region 162960
Tssr162961 X 9467895 to 9467919 24 - TSS region transcription start site region 162961
Tssr162962 X 9467990 to 9467996 6 - TSS region transcription start site region 162962
Tssr162963 X 9469250 to 9469281 31 - TSS region transcription start site region 162963
Tssr162964 X 9469288 to 9469331 43 - TSS region transcription start site region 162964
Tssr162965 X 9469436 to 9469446 10 - TSS region transcription start site region 162965
Tssr162966 X 9469480 to 9469504 24 - TSS region transcription start site region 162966
Tssr162967 X 9471026 to 9471029 3 - TSS region transcription start site region 162967
Tssr160524 X 9480566 to 9480570 4 + TSS region transcription start site region 160524
Gm33784 X 9480573 to 9484526 3953 + lncRNA gene predicted gene, 33784
Tssr160525 X 9490380 to 9490383 3 + TSS region transcription start site region 160525
Tssr162968 X 9516298 to 9516300 2 - TSS region transcription start site region 162968
DXMit124b X 9516981 to 9517149 168 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 124b
Gm25728 X 9532511 to 9532669 158 - snRNA gene predicted gene, 25728
H2al1o X 9571960 to 9572391 431 - protein coding gene H2A histone family member L1O
Dynlt3 X 9654270 to 9662983 8713 - protein coding gene dynein light chain Tctex-type 3
Tssr162969 X 9655161 to 9655191 30 - TSS region transcription start site region 162969
Tssr162970 X 9655609 to 9655621 12 - TSS region transcription start site region 162970
Tssr162971 X 9655659 to 9655672 13 - TSS region transcription start site region 162971
Tssr162972 X 9655944 to 9655965 21 - TSS region transcription start site region 162972
Tssr162973 X 9656013 to 9656048 35 - TSS region transcription start site region 162973
Tssr162974 X 9662902 to 9662942 40 - TSS region transcription start site region 162974
Tssr162975 X 9662950 to 9662970 20 - TSS region transcription start site region 162975
Tssr160526 X 9747708 to 9747747 39 + TSS region transcription start site region 160526
Tssr160527 X 9747755 to 9747779 24 + TSS region transcription start site region 160527
Tssr5589 X 9747794 to 9747804 10 + TSS region transcription start site region 5589
Tssr160528 X 9846945 to 9846977 32 + TSS region transcription start site region 160528
Hypm X 9846947 to 9847500 553 + protein coding gene huntingtin interacting protein M
H2al3 X 9849703 to 9850252 549 + protein coding gene H2A histone family member L3
Tssr160529 X 9849707 to 9849710 3 + TSS region transcription start site region 160529
Tssr5590 X 9862099 to 9862115 16 + TSS region transcription start site region 5590
Tssr160530 X 9862130 to 9862143 13 + TSS region transcription start site region 160530
Sytl5 X 9885622 to 9994543 108921 + protein coding gene synaptotagmin-like 5
Gm39493 X 9933835 to 9939308 5473 - lncRNA gene predicted gene, 39493
Gm5754 X 10011788 to 10012679 891 + pseudogene predicted gene 5754
Srpx X 10037977 to 10117661 79684 - protein coding gene sushi-repeat-containing protein
Tssr162976 X 10117597 to 10117677 80 - TSS region transcription start site region 162976
Gm33844 X 10117838 to 10120004 2166 + lncRNA gene predicted gene, 33844
Rpgr X 10158216 to 10216795 58579 - protein coding gene retinitis pigmentosa GTPase regulator
Tssr162977 X 10216437 to 10216482 45 - TSS region transcription start site region 162977
Cpgi22600 X 10216460 to 10216967 507 CpG island CpG island 22600
Tssr162978 X 10216685 to 10216765 80 - TSS region transcription start site region 162978
Tssr162979 X 10216918 to 10216921 3 - TSS region transcription start site region 162979
Otc X 10252305 to 10321024 68719 + protein coding gene ornithine transcarbamylase
Tssr160531 X 10252334 to 10252357 23 + TSS region transcription start site region 160531
Tssr160532 X 10252361 to 10252383 22 + TSS region transcription start site region 160532
Tssr160533 X 10254419 to 10254420 1 + TSS region transcription start site region 160533
Tssr160534 X 10276645 to 10276661 16 + TSS region transcription start site region 160534
Tssr160535 X 10312474 to 10312493 19 + TSS region transcription start site region 160535
Tssr160536 X 10319841 to 10319873 32 + TSS region transcription start site region 160536
DXMit89 X 10399986 to 10400132 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 89
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
4933416E14Rik X 10415301 to 10417238 1937 - pseudogene RIKEN cDNA 4933416E14 gene
Tssr160537 X 10416640 to 10416662 22 + TSS region transcription start site region 160537
Tssr160538 X 10416675 to 10416682 7 + TSS region transcription start site region 160538
Cpgi22601 X 10484853 to 10485422 569 CpG island CpG island 22601
Tssr160539 X 10485121 to 10485163 42 + TSS region transcription start site region 160539
Tspan7 X 10485158 to 10596605 111447 + protein coding gene tetraspanin 7
Cpgi22602 X 10485773 to 10486050 277 CpG island CpG island 22602
Tssr160540 X 10487823 to 10487831 8 + TSS region transcription start site region 160540
Gm25885 X 10510048 to 10510156 108 + rRNA gene predicted gene, 25885
Tssr160541 X 10518624 to 10518627 3 + TSS region transcription start site region 160541