Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:94404007-95594018

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apoo X 94367117 to 94417093 49976 + protein coding gene apolipoprotein O
Gm36131 X 94417773 to 94441811 24038 + lncRNA gene predicted gene, 36131
Gm9003 X 94422678 to 94423295 617 - pseudogene predicted pseudogene 9003
Gm14827 X 94442732 to 94447727 4995 + lincRNA gene predicted gene 14827
Gm18919 X 94443154 to 94443902 748 - pseudogene predicted gene, 18919
Gm24595 X 94455010 to 94455119 109 - snoRNA gene predicted gene, 24595
Tssr163784 X 94459774 to 94459776 2 - TSS region transcription start site region 163784
Tssr161491 X 94481885 to 94481886 1 + TSS region transcription start site region 161491
Maged1 X 94535474 to 94542074 6600 - protein coding gene melanoma antigen, family D, 1
Tssr163785 X 94537348 to 94537357 9 - TSS region transcription start site region 163785
Tssr163786 X 94539082 to 94539094 12 - TSS region transcription start site region 163786
Tssr163787 X 94540216 to 94540239 23 - TSS region transcription start site region 163787
Tssr163788 X 94540243 to 94540260 17 - TSS region transcription start site region 163788
Tssr163789 X 94540306 to 94540321 15 - TSS region transcription start site region 163789
Tssr163790 X 94540403 to 94540422 19 - TSS region transcription start site region 163790
Tssr163791 X 94540431 to 94540444 13 - TSS region transcription start site region 163791
Cpgi22834 X 94541269 to 94542344 1075 CpG island CpG island 22834
Tssr163792 X 94541984 to 94542031 47 - TSS region transcription start site region 163792
Tssr163793 X 94542037 to 94542042 5 - TSS region transcription start site region 163793
Tssr163794 X 94542063 to 94542072 9 - TSS region transcription start site region 163794
Gm9005 X 94546963 to 94547569 606 - pseudogene predicted gene 9005
Gm18110 X 94552440 to 94553498 1058 + pseudogene predicted gene, 18110
Gm14831 X 94557341 to 94557749 408 + pseudogene predicted gene 14831
Gm5401 X 94608219 to 94608696 477 - pseudogene predicted pseudogene 5401
Gm9009 X 94615800 to 94616125 325 + pseudogene predicted pseudogene 9009
Cpgi22835 X 94635969 to 94636626 657 CpG island CpG island 22835
Tssr161492 X 94636044 to 94636053 9 + TSS region transcription start site region 161492
Tssr161493 X 94636066 to 94636086 20 + TSS region transcription start site region 161493
Gspt2 X 94636069 to 94638562 2493 + protein coding gene G1 to S phase transition 2
Tssr161494 X 94636100 to 94636111 11 + TSS region transcription start site region 161494
Gm5402 X 94671503 to 94673120 1617 - pseudogene predicted gene 5402
DXMit113a X 94700904 to 94700997 93 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 113a
Zxdb X 94724569 to 94730187 5618 + protein coding gene zinc finger, X-linked, duplicated B
Gm39526 X 94731399 to 94745359 13960 + lincRNA gene predicted gene, 39526
Gm7061 X 94772619 to 94774034 1415 - pseudogene predicted gene 7061
Cpgi22836 X 94773755 to 94774234 479 CpG island CpG island 22836
Gm14830 X 94774978 to 94775677 699 - pseudogene predicted gene 14830
Tssr161495 X 94789676 to 94789686 10 + TSS region transcription start site region 161495
Rpl13-ps5 X 94789717 to 94790346 629 + pseudogene ribosomal protein L13, pseudogene 5
Gm26617 X 94793103 to 94798237 5134 + lincRNA gene predicted gene, 26617
Zxda X 94795563 to 94798183 2620 - pseudogene zinc finger, X-linked, duplicated A
Gm36695 X 94827768 to 94858939 31171 + lncRNA gene predicted gene, 36695
DXMit113b X 94833381 to 94833476 95 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 113b
Cpgi22837 X 94990577 to 94990820 243 CpG island CpG island 22837
Gm371 X 94997439 to 94998683 1244 - pseudogene predicted pseudogene 371
Tssr163795 X 94999007 to 94999018 11 - TSS region transcription start site region 163795
Spin4 X 95022510 to 95026682 4172 - protein coding gene spindlin family, member 4
Cpgi22838 X 95025995 to 95026815 820 CpG island CpG island 22838
Tssr163796 X 95026671 to 95026701 30 - TSS region transcription start site region 163796
Arhgef9 X 95048930 to 95196851 147921 - protein coding gene CDC42 guanine nucleotide exchange factor (GEF) 9
5730407O05Rik X 95159095 to 95160855 1760 unclassified gene RIKEN cDNA 5730407O05 gene
Tssr163797 X 95166343 to 95166426 83 - TSS region transcription start site region 163797
Cpgi22839 X 95166449 to 95166611 162 CpG island CpG island 22839
Cpgi22840 X 95196401 to 95196617 216 CpG island CpG island 22840
Tssr163798 X 95196450 to 95196519 69 - TSS region transcription start site region 163798
Tssr163799 X 95196604 to 95196694 90 - TSS region transcription start site region 163799
Gm6092 X 95211186 to 95211777 591 - pseudogene predicted gene 6092
Tssr163800 X 95211788 to 95211802 14 - TSS region transcription start site region 163800
Gm14807 X 95252916 to 95253898 982 - pseudogene predicted gene 14807
Gm3712 X 95321317 to 95321823 506 - pseudogene predicted gene 3712
Tssr161496 X 95325136 to 95325139 3 + TSS region transcription start site region 161496
Gm14806 X 95381861 to 95382436 575 - pseudogene predicted gene 14806
Amer1 X 95420313 to 95444840 24527 - protein coding gene APC membrane recruitment 1
Cpgi22841 X 95444406 to 95445020 614 CpG island CpG island 22841
Tssr163801 X 95444765 to 95444777 12 - TSS region transcription start site region 163801
Tssr163802 X 95444789 to 95444829 40 - TSS region transcription start site region 163802
Gm18664 X 95467664 to 95468166 502 - pseudogene predicted gene, 18664
Asb12 X 95470201 to 95557987 87786 - protein coding gene ankyrin repeat and SOCS box-containing 12
Tssr163803 X 95478076 to 95478087 11 - TSS region transcription start site region 163803
Tssr163804 X 95478107 to 95478137 30 - TSS region transcription start site region 163804
Tssr161497 X 95558099 to 95558108 9 + TSS region transcription start site region 161497
Pfn5 X 95558104 to 95558803 699 + protein coding gene profilin 5
Tssr161498 X 95558193 to 95558196 3 + TSS region transcription start site region 161498
Lgth14 X 151000000 to 95000000 -56000000 QTL body length 14
Wght12 X 151000000 to 95000000 -56000000 QTL weight 12