Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:9391685-11041765

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cybb X 9435252 to 9487766 52514 - protein coding gene cytochrome b-245, beta polypeptide
Tssr160517 X 9435493 to 9435499 6 + TSS region transcription start site region 160517
Tssr162873 X 9435609 to 9435648 39 - TSS region transcription start site region 162873
Tssr162874 X 9435884 to 9435904 20 - TSS region transcription start site region 162874
Tssr162875 X 9435910 to 9435927 17 - TSS region transcription start site region 162875
Tssr160518 X 9435952 to 9436001 49 + TSS region transcription start site region 160518
Tssr162876 X 9436066 to 9436083 17 - TSS region transcription start site region 162876
Tssr162877 X 9436087 to 9436102 15 - TSS region transcription start site region 162877
Tssr162878 X 9436139 to 9436154 15 - TSS region transcription start site region 162878
Tssr162879 X 9436248 to 9436260 12 - TSS region transcription start site region 162879
Tssr162880 X 9436314 to 9436346 32 - TSS region transcription start site region 162880
Tssr162881 X 9436350 to 9436364 14 - TSS region transcription start site region 162881
Tssr160519 X 9436630 to 9436645 15 + TSS region transcription start site region 160519
Tssr160520 X 9436654 to 9436709 55 + TSS region transcription start site region 160520
Tssr162882 X 9436661 to 9436664 3 - TSS region transcription start site region 162882
Tssr160521 X 9436741 to 9436763 22 + TSS region transcription start site region 160521
Tssr160522 X 9436872 to 9436880 8 + TSS region transcription start site region 160522
Tssr162883 X 9437041 to 9437054 13 - TSS region transcription start site region 162883
Tssr162884 X 9437083 to 9437119 36 - TSS region transcription start site region 162884
Tssr162885 X 9437127 to 9437155 28 - TSS region transcription start site region 162885
Tssr162886 X 9437174 to 9437175 1 - TSS region transcription start site region 162886
Tssr162887 X 9437201 to 9437213 12 - TSS region transcription start site region 162887
Tssr162888 X 9437254 to 9437267 13 - TSS region transcription start site region 162888
Tssr162889 X 9437284 to 9437285 1 - TSS region transcription start site region 162889
Tssr162890 X 9437344 to 9437355 11 - TSS region transcription start site region 162890
Tssr162891 X 9437378 to 9437383 5 - TSS region transcription start site region 162891
Tssr162892 X 9437431 to 9437438 7 - TSS region transcription start site region 162892
Tssr162893 X 9437535 to 9437543 8 - TSS region transcription start site region 162893
Tssr162894 X 9437565 to 9437579 14 - TSS region transcription start site region 162894
Tssr162895 X 9437625 to 9437635 10 - TSS region transcription start site region 162895
Tssr162896 X 9437651 to 9437662 11 - TSS region transcription start site region 162896
Tssr162897 X 9437678 to 9437693 15 - TSS region transcription start site region 162897
Tssr162898 X 9437702 to 9437713 11 - TSS region transcription start site region 162898
Tssr162899 X 9437848 to 9437853 5 - TSS region transcription start site region 162899
Tssr162900 X 9437858 to 9437871 13 - TSS region transcription start site region 162900
Tssr162901 X 9437889 to 9437900 11 - TSS region transcription start site region 162901
Tssr162902 X 9437971 to 9437983 12 - TSS region transcription start site region 162902
Tssr162903 X 9438032 to 9438037 5 - TSS region transcription start site region 162903
Tssr162904 X 9438133 to 9438144 11 - TSS region transcription start site region 162904
Tssr162905 X 9438217 to 9438218 1 - TSS region transcription start site region 162905
Tssr162906 X 9438221 to 9438233 12 - TSS region transcription start site region 162906
Tssr162907 X 9438294 to 9438305 11 - TSS region transcription start site region 162907
Tssr162908 X 9438318 to 9438336 18 - TSS region transcription start site region 162908
Tssr162909 X 9439923 to 9439946 23 - TSS region transcription start site region 162909
Tssr162910 X 9439948 to 9439993 45 - TSS region transcription start site region 162910
Tssr162911 X 9440002 to 9440031 29 - TSS region transcription start site region 162911
Tssr160523 X 9442546 to 9442568 22 + TSS region transcription start site region 160523
Tssr162912 X 9442607 to 9442681 74 - TSS region transcription start site region 162912
Tssr162913 X 9444453 to 9444466 13 - TSS region transcription start site region 162913
Tssr162914 X 9444582 to 9444644 62 - TSS region transcription start site region 162914
Tssr162915 X 9444645 to 9444714 69 - TSS region transcription start site region 162915
Tssr162916 X 9445687 to 9445722 35 - TSS region transcription start site region 162916
Tssr162917 X 9445841 to 9445861 20 - TSS region transcription start site region 162917
Tssr162918 X 9446072 to 9446083 11 - TSS region transcription start site region 162918
Tssr162919 X 9446112 to 9446124 12 - TSS region transcription start site region 162919
Tssr162920 X 9446727 to 9446759 32 - TSS region transcription start site region 162920
Tssr162921 X 9446782 to 9446794 12 - TSS region transcription start site region 162921
Tssr162922 X 9446808 to 9446850 42 - TSS region transcription start site region 162922
Tssr162923 X 9446852 to 9446868 16 - TSS region transcription start site region 162923
Tssr162924 X 9446923 to 9446932 9 - TSS region transcription start site region 162924
Tssr162925 X 9449657 to 9449739 82 - TSS region transcription start site region 162925
Tssr162926 X 9450758 to 9450816 58 - TSS region transcription start site region 162926
Tssr162927 X 9453627 to 9453671 44 - TSS region transcription start site region 162927
Tssr162928 X 9453673 to 9453769 96 - TSS region transcription start site region 162928
Tssr162929 X 9455169 to 9455287 118 - TSS region transcription start site region 162929
Tssr162930 X 9456989 to 9457054 65 - TSS region transcription start site region 162930
Tssr162931 X 9459209 to 9459223 14 - TSS region transcription start site region 162931
Tssr162932 X 9459321 to 9459332 11 - TSS region transcription start site region 162932
Tssr162933 X 9459370 to 9459381 11 - TSS region transcription start site region 162933
Tssr162934 X 9459392 to 9459406 14 - TSS region transcription start site region 162934
Tssr162935 X 9459441 to 9459463 22 - TSS region transcription start site region 162935
Tssr162936 X 9459464 to 9459494 30 - TSS region transcription start site region 162936
Tssr162937 X 9460682 to 9460693 11 - TSS region transcription start site region 162937
Tssr162938 X 9460702 to 9460718 16 - TSS region transcription start site region 162938
Tssr162939 X 9460985 to 9461016 31 - TSS region transcription start site region 162939
Tssr162940 X 9461427 to 9461431 4 - TSS region transcription start site region 162940
Tssr162941 X 9461803 to 9461826 23 - TSS region transcription start site region 162941
Tssr162942 X 9461863 to 9461874 11 - TSS region transcription start site region 162942
Tssr162943 X 9461929 to 9461942 13 - TSS region transcription start site region 162943
Tssr162944 X 9462053 to 9462065 12 - TSS region transcription start site region 162944
Tssr162945 X 9462714 to 9462732 18 - TSS region transcription start site region 162945
Tssr162946 X 9462762 to 9462795 33 - TSS region transcription start site region 162946
Tssr162947 X 9462879 to 9462890 11 - TSS region transcription start site region 162947
Tssr162948 X 9463423 to 9463440 17 - TSS region transcription start site region 162948
Tssr162949 X 9463466 to 9463478 12 - TSS region transcription start site region 162949
Tssr162950 X 9463498 to 9463510 12 - TSS region transcription start site region 162950
Tssr162951 X 9463803 to 9463814 11 - TSS region transcription start site region 162951
Tssr162952 X 9463839 to 9463849 10 - TSS region transcription start site region 162952
Tssr162953 X 9464080 to 9464091 11 - TSS region transcription start site region 162953
Tssr162954 X 9465296 to 9465319 23 - TSS region transcription start site region 162954
Tssr162955 X 9465400 to 9465411 11 - TSS region transcription start site region 162955
Tssr162956 X 9465632 to 9465648 16 - TSS region transcription start site region 162956
Tssr162957 X 9465672 to 9465762 90 - TSS region transcription start site region 162957
Tssr5588 X 9465736 to 9465750 14 + TSS region transcription start site region 5588
Tssr162958 X 9466727 to 9466731 4 - TSS region transcription start site region 162958
Tssr162959 X 9467104 to 9467192 88 - TSS region transcription start site region 162959
Tssr162960 X 9467231 to 9467240 9 - TSS region transcription start site region 162960
Tssr162961 X 9467895 to 9467919 24 - TSS region transcription start site region 162961
Tssr162962 X 9467990 to 9467996 6 - TSS region transcription start site region 162962
Tssr162963 X 9469250 to 9469281 31 - TSS region transcription start site region 162963
Tssr162964 X 9469288 to 9469331 43 - TSS region transcription start site region 162964
Tssr162965 X 9469436 to 9469446 10 - TSS region transcription start site region 162965
Tssr162966 X 9469480 to 9469504 24 - TSS region transcription start site region 162966
Tssr162967 X 9471026 to 9471029 3 - TSS region transcription start site region 162967
Tssr160524 X 9480566 to 9480570 4 + TSS region transcription start site region 160524
Gm33784 X 9480573 to 9484526 3953 + lncRNA gene predicted gene, 33784
Tssr160525 X 9490380 to 9490383 3 + TSS region transcription start site region 160525
Tssr162968 X 9516298 to 9516300 2 - TSS region transcription start site region 162968
DXMit124b X 9516981 to 9517149 168 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 124b
Gm25728 X 9532511 to 9532669 158 - snRNA gene predicted gene, 25728
H2al1o X 9571960 to 9572391 431 - protein coding gene H2A histone family member L1O
Dynlt3 X 9654270 to 9662983 8713 - protein coding gene dynein light chain Tctex-type 3
Tssr162969 X 9655161 to 9655191 30 - TSS region transcription start site region 162969
Tssr162970 X 9655609 to 9655621 12 - TSS region transcription start site region 162970
Tssr162971 X 9655659 to 9655672 13 - TSS region transcription start site region 162971
Tssr162972 X 9655944 to 9655965 21 - TSS region transcription start site region 162972
Tssr162973 X 9656013 to 9656048 35 - TSS region transcription start site region 162973
Tssr162974 X 9662902 to 9662942 40 - TSS region transcription start site region 162974
Tssr162975 X 9662950 to 9662970 20 - TSS region transcription start site region 162975
Tssr160526 X 9747708 to 9747747 39 + TSS region transcription start site region 160526
Tssr160527 X 9747755 to 9747779 24 + TSS region transcription start site region 160527
Tssr5589 X 9747794 to 9747804 10 + TSS region transcription start site region 5589
Tssr160528 X 9846945 to 9846977 32 + TSS region transcription start site region 160528
Hypm X 9846947 to 9847500 553 + protein coding gene huntingtin interacting protein M
H2al3 X 9849703 to 9850252 549 + protein coding gene H2A histone family member L3
Tssr160529 X 9849707 to 9849710 3 + TSS region transcription start site region 160529
Tssr5590 X 9862099 to 9862115 16 + TSS region transcription start site region 5590
Tssr160530 X 9862130 to 9862143 13 + TSS region transcription start site region 160530
Sytl5 X 9885622 to 9994543 108921 + protein coding gene synaptotagmin-like 5
Gm39493 X 9933835 to 9939308 5473 - lncRNA gene predicted gene, 39493
Gm5754 X 10011788 to 10012679 891 + pseudogene predicted gene 5754
Srpx X 10037977 to 10117661 79684 - protein coding gene sushi-repeat-containing protein
Tssr162976 X 10117597 to 10117677 80 - TSS region transcription start site region 162976
Gm33844 X 10117838 to 10120004 2166 + lncRNA gene predicted gene, 33844
Rpgr X 10158216 to 10216795 58579 - protein coding gene retinitis pigmentosa GTPase regulator
Tssr162977 X 10216437 to 10216482 45 - TSS region transcription start site region 162977
Cpgi22600 X 10216460 to 10216967 507 CpG island CpG island 22600
Tssr162978 X 10216685 to 10216765 80 - TSS region transcription start site region 162978
Tssr162979 X 10216918 to 10216921 3 - TSS region transcription start site region 162979
Otc X 10252305 to 10321024 68719 + protein coding gene ornithine transcarbamylase
Tssr160531 X 10252334 to 10252357 23 + TSS region transcription start site region 160531
Tssr160532 X 10252361 to 10252383 22 + TSS region transcription start site region 160532
Tssr160533 X 10254419 to 10254420 1 + TSS region transcription start site region 160533
Tssr160534 X 10276645 to 10276661 16 + TSS region transcription start site region 160534
Tssr160535 X 10312474 to 10312493 19 + TSS region transcription start site region 160535
Tssr160536 X 10319841 to 10319873 32 + TSS region transcription start site region 160536
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
DXMit89 X 10399986 to 10400132 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 89
4933416E14Rik X 10415301 to 10417238 1937 - pseudogene RIKEN cDNA 4933416E14 gene
Tssr160537 X 10416640 to 10416662 22 + TSS region transcription start site region 160537
Tssr160538 X 10416675 to 10416682 7 + TSS region transcription start site region 160538
Cpgi22601 X 10484853 to 10485422 569 CpG island CpG island 22601
Tssr160539 X 10485121 to 10485163 42 + TSS region transcription start site region 160539
Tspan7 X 10485158 to 10596605 111447 + protein coding gene tetraspanin 7
Cpgi22602 X 10485773 to 10486050 277 CpG island CpG island 22602
Tssr160540 X 10487823 to 10487831 8 + TSS region transcription start site region 160540
Gm25885 X 10510048 to 10510156 108 + rRNA gene predicted gene, 25885
Tssr160541 X 10518624 to 10518627 3 + TSS region transcription start site region 160541
Tssr160542 X 10582134 to 10582137 3 + TSS region transcription start site region 160542
Tssr160543 X 10582145 to 10582154 9 + TSS region transcription start site region 160543
Tssr160544 X 10585549 to 10585572 23 + TSS region transcription start site region 160544
Tssr160545 X 10595702 to 10595787 85 + TSS region transcription start site region 160545
Tssr162980 X 10595718 to 10595752 34 - TSS region transcription start site region 162980
Tssr160546 X 10596004 to 10596030 26 + TSS region transcription start site region 160546
Cpgi22603 X 10650550 to 10650726 176 CpG island CpG island 22603
Gm5931 X 10660522 to 10660998 476 + pseudogene predicted pseudogene 5931
Gm14470 X 10680964 to 10681429 465 + pseudogene predicted gene 14470
Gm14480 X 10696932 to 10697364 432 - pseudogene predicted gene 14480
Tssr5591 X 10697431 to 10697434 3 - TSS region transcription start site region 5591
Gm10489 X 10707176 to 10717242 10066 - lincRNA gene predicted gene 10489
Tssr160547 X 10715036 to 10715057 21 + TSS region transcription start site region 160547
Cpgi22604 X 10717194 to 10717662 468 CpG island CpG island 22604
Mid1ip1 X 10717365 to 10719702 2337 + protein coding gene Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
Tssr160548 X 10717439 to 10717450 11 + TSS region transcription start site region 160548
Tssr160549 X 10717451 to 10717491 40 + TSS region transcription start site region 160549
Tssr162981 X 10717451 to 10717456 5 - TSS region transcription start site region 162981
Gm14493 X 10717473 to 10718710 1237 - antisense lncRNA gene predicted gene 14493
Tssr160550 X 10717502 to 10717514 12 + TSS region transcription start site region 160550
Tssr160551 X 10717578 to 10717596 18 + TSS region transcription start site region 160551
Cpgi22605 X 10717983 to 10718699 716 CpG island CpG island 22605
Tssr160552 X 10718534 to 10718543 9 + TSS region transcription start site region 160552
DXMit102 X 10793966 to 10794095 129 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 102
Gm14473 X 10865077 to 10865633 556 - pseudogene predicted gene 14473
Gm33984 X 10884060 to 10912210 28150 + lncRNA gene predicted gene, 33984
Tssr160553 X 10911557 to 10911565 8 + TSS region transcription start site region 160553
Gm39494 X 10989143 to 10991957 2814 - lncRNA gene predicted gene, 39494
Gm14485 X 11020515 to 11021007 492 - pseudogene predicted gene 14485