Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:92798659-95145470

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
exma X 82948870 to 94123702 11174832 heritable phenotypic marker exencephaly and severe microphthalmia/anophthalmia
Tssr5647 X 92837468 to 92837474 6 + TSS region transcription start site region 5647
Gm25332 X 92882451 to 92882555 104 + snRNA gene predicted gene, 25332
Gm38657 X 92934936 to 93057944 123008 - lncRNA gene predicted gene, 38657
Gm24973 X 92989095 to 92989195 100 - miRNA gene predicted gene, 24973
Tssr161473 X 93094406 to 93094407 1 + TSS region transcription start site region 161473
1700003E24Rik X 93156221 to 93156873 652 + lincRNA gene RIKEN cDNA 1700003E24 gene
Gm24123 X 93164902 to 93164984 82 + snoRNA gene predicted gene, 24123
BC061195 X 93183227 to 93183946 719 + lincRNA gene cDNA sequence BC061195
Gm23454 X 93251474 to 93251606 132 + snoRNA gene predicted gene, 23454
Mdmsc6 X 93263065 to 93263152 87 QTL modifier of muscularity 6
DXMit128 X 93263065 to 93263152 87 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 128
Cpgi22819 X 93286467 to 93286623 156 CpG island CpG island 22819
Tssr161474 X 93286499 to 93286522 23 + TSS region transcription start site region 161474
Arx X 93286507 to 93298357 11850 + protein coding gene aristaless related homeobox
Cpgi22820 X 93288425 to 93289558 1133 CpG island CpG island 22820
Cpgi22821 X 93297069 to 93297596 527 CpG island CpG island 22821
Cpgi22822 X 93299055 to 93299413 358 CpG island CpG island 22822
Pola1 X 93304767 to 93632155 327388 - protein coding gene polymerase (DNA directed), alpha 1
Gm35587 X 93401285 to 93434706 33421 + lncRNA gene predicted gene, 35587
Gm14780 X 93527573 to 93530309 2736 + pseudogene predicted gene 14780
Gm23557 X 93573731 to 93573868 137 - snoRNA gene predicted gene, 23557
Cpgi22823 X 93631977 to 93632396 419 CpG island CpG island 22823
Tssr163764 X 93632113 to 93632186 73 - TSS region transcription start site region 163764
Gm6985 X 93638614 to 93638884 270 + pseudogene predicted pseudogene 6985
Pcyt1b X 93654863 to 93749951 95088 + protein coding gene phosphate cytidylyltransferase 1, choline, beta isoform
Tssr161475 X 93654970 to 93654981 11 + TSS region transcription start site region 161475
Tssr161476 X 93675088 to 93675161 73 + TSS region transcription start site region 161476
Tssr161477 X 93675343 to 93675376 33 + TSS region transcription start site region 161477
Tssr161478 X 93675404 to 93675433 29 + TSS region transcription start site region 161478
Tssr161479 X 93701091 to 93701102 11 + TSS region transcription start site region 161479
Gm46688 X 93702182 to 93715505 13323 - lncRNA gene predicted gene, 46688
Gm35641 X 93715634 to 93745418 29784 - lncRNA gene predicted gene, 35641
Pdk3 X 93764616 to 93832095 67479 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 3
Tssr163765 X 93796290 to 93796294 4 - TSS region transcription start site region 163765
Tssr161480 X 93807005 to 93807012 7 + TSS region transcription start site region 161480
Gm46689 X 93826008 to 93827308 1300 - lncRNA gene predicted gene, 46689
Cpgi22824 X 93831625 to 93832438 813 CpG island CpG island 22824
Tssr163766 X 93831893 to 93831904 11 - TSS region transcription start site region 163766
Tssr163767 X 93832020 to 93832031 11 - TSS region transcription start site region 163767
Tssr5648 X 93832084 to 93832094 10 - TSS region transcription start site region 5648
Tssr163768 X 93832106 to 93832199 93 - TSS region transcription start site region 163768
Tssr163769 X 93832666 to 93832681 15 - TSS region transcription start site region 163769
Tssr163770 X 93832701 to 93832713 12 - TSS region transcription start site region 163770
Supt20-ps X 93921167 to 93921941 774 - pseudogene suppressor of Ty 20, pseudogene
Cpgi22825 X 93922125 to 93922473 348 CpG island CpG island 22825
Cpgi22826 X 93922792 to 93922948 156 CpG island CpG island 22826
Tssr163771 X 93923007 to 93923012 5 - TSS region transcription start site region 163771
Gm15164 X 93931561 to 93931831 270 + pseudogene predicted gene 15164
Tssr161481 X 93968649 to 93968675 26 + TSS region transcription start site region 161481
AU015836 X 93968659 to 93975470 6811 + protein coding gene expressed sequence AU015836
Tssr161482 X 93968682 to 93968689 7 + TSS region transcription start site region 161482
Tssr5649 X 93969202 to 93969224 22 + TSS region transcription start site region 5649
Cpgi22827 X 93980561 to 93980979 418 CpG island CpG island 22827
Gm14790 X 93981069 to 93982469 1400 - pseudogene predicted gene 14790
Gm4990 X 93981099 to 93982499 1400 + pseudogene predicted gene 4990
Gm15165 X 93988318 to 93988819 501 - pseudogene predicted gene 15165
Cpgi22828 X 93988721 to 93988905 184 CpG island CpG island 22828
Tssr161483 X 94023812 to 94023822 10 + TSS region transcription start site region 161483
Gm6987 X 94023860 to 94024626 766 + pseudogene predicted pseudogene 6987
Gm14798 X 94028854 to 94099304 70450 + antisense lncRNA gene predicted gene 14798
Zfx X 94074631 to 94123702 49071 - protein coding gene zinc finger protein X-linked
Cpgi22829 X 94122224 to 94123711 1487 CpG island CpG island 22829
Tssr163772 X 94122320 to 94122326 6 - TSS region transcription start site region 163772
Tssr163773 X 94123087 to 94123159 72 - TSS region transcription start site region 163773
Tssr163774 X 94123165 to 94123177 12 - TSS region transcription start site region 163774
Tssr161484 X 94123201 to 94123242 41 + TSS region transcription start site region 161484
Tssr163775 X 94123359 to 94123412 53 - TSS region transcription start site region 163775
Tssr163776 X 94123434 to 94123445 11 - TSS region transcription start site region 163776
DXMit6 X 94123636 to 94123841 205 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 6
Gm46691 X 94125249 to 94140487 15238 - lncRNA gene predicted gene, 46691
Tssr163777 X 94136105 to 94136109 4 - TSS region transcription start site region 163777
Tssr163778 X 94150631 to 94150638 7 - TSS region transcription start site region 163778
DXMit63 X 94156856 to 94156978 122 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 63
Cpgi22830 X 94177624 to 94178299 675 CpG island CpG island 22830
Tssr163779 X 94177853 to 94177864 11 - TSS region transcription start site region 163779
Eif2s3x X 94188709 to 94212651 23942 - protein coding gene eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
Cpgi22831 X 94212490 to 94213295 805 CpG island CpG island 22831
Tssr163780 X 94212638 to 94212662 24 - TSS region transcription start site region 163780
Tssr163781 X 94212685 to 94212696 11 - TSS region transcription start site region 163781
Tssr163782 X 94212905 to 94212922 17 - TSS region transcription start site region 163782
Cpgi22832 X 94234273 to 94235533 1260 CpG island CpG island 22832
Tssr161485 X 94234594 to 94234604 10 + TSS region transcription start site region 161485
Klhl15 X 94234599 to 94277724 43125 + protein coding gene kelch-like 15
Tssr161486 X 94234921 to 94234972 51 + TSS region transcription start site region 161486
Tssr161487 X 94234982 to 94234997 15 + TSS region transcription start site region 161487
Mir7673 X 94274574 to 94274637 63 + miRNA gene microRNA 7673
Tssr161488 X 94274775 to 94274786 11 + TSS region transcription start site region 161488
Gm5400 X 94311894 to 94312836 942 + pseudogene predicted gene 5400
Gm14826 X 94317560 to 94318460 900 - pseudogene predicted gene 14826
DXMit212 X 94321919 to 94322091 172 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 212
Gm14825 X 94330973 to 94331671 698 + pseudogene predicted gene 14825
Fam90a1b X 94355053 to 94366777 11724 - protein coding gene family with sequence similarity 90, member A1B
Cpgi22833 X 94366651 to 94367230 579 CpG island CpG island 22833
Tssr163783 X 94366852 to 94366862 10 - TSS region transcription start site region 163783
Tssr161489 X 94367112 to 94367134 22 + TSS region transcription start site region 161489
Apoo X 94367117 to 94417093 49976 + protein coding gene apolipoprotein O
Tssr161490 X 94367147 to 94367165 18 + TSS region transcription start site region 161490
Gm44477 X 94394818 to 94394927 109 - miRNA gene predicted gene, 44477
Gm36131 X 94417773 to 94441811 24038 + lncRNA gene predicted gene, 36131
Gm9003 X 94422678 to 94423295 617 - pseudogene predicted pseudogene 9003
Gm14827 X 94442732 to 94447727 4995 + lincRNA gene predicted gene 14827
Gm18919 X 94443154 to 94443902 748 - pseudogene predicted gene, 18919
Gm24595 X 94455010 to 94455119 109 - snoRNA gene predicted gene, 24595
Tssr163784 X 94459774 to 94459776 2 - TSS region transcription start site region 163784
Tssr161491 X 94481885 to 94481886 1 + TSS region transcription start site region 161491
Maged1 X 94535474 to 94542074 6600 - protein coding gene melanoma antigen, family D, 1
Tssr163785 X 94537348 to 94537357 9 - TSS region transcription start site region 163785
Tssr163786 X 94539082 to 94539094 12 - TSS region transcription start site region 163786
Tssr163787 X 94540216 to 94540239 23 - TSS region transcription start site region 163787
Tssr163788 X 94540243 to 94540260 17 - TSS region transcription start site region 163788
Tssr163789 X 94540306 to 94540321 15 - TSS region transcription start site region 163789
Tssr163790 X 94540403 to 94540422 19 - TSS region transcription start site region 163790
Tssr163791 X 94540431 to 94540444 13 - TSS region transcription start site region 163791
Cpgi22834 X 94541269 to 94542344 1075 CpG island CpG island 22834
Tssr163792 X 94541984 to 94542031 47 - TSS region transcription start site region 163792
Tssr163793 X 94542037 to 94542042 5 - TSS region transcription start site region 163793
Tssr163794 X 94542063 to 94542072 9 - TSS region transcription start site region 163794
Gm9005 X 94546963 to 94547569 606 - pseudogene predicted gene 9005
Gm18110 X 94552440 to 94553498 1058 + pseudogene predicted gene, 18110
Gm14831 X 94557341 to 94557749 408 + pseudogene predicted gene 14831
Gm5401 X 94608219 to 94608696 477 - pseudogene predicted pseudogene 5401
Gm9009 X 94615800 to 94616125 325 + pseudogene predicted pseudogene 9009
Cpgi22835 X 94635969 to 94636626 657 CpG island CpG island 22835
Tssr161492 X 94636044 to 94636053 9 + TSS region transcription start site region 161492
Tssr161493 X 94636066 to 94636086 20 + TSS region transcription start site region 161493
Gspt2 X 94636069 to 94638562 2493 + protein coding gene G1 to S phase transition 2
Tssr161494 X 94636100 to 94636111 11 + TSS region transcription start site region 161494
Gm5402 X 94671503 to 94673120 1617 - pseudogene predicted gene 5402
DXMit113a X 94700904 to 94700997 93 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 113a
Zxdb X 94724569 to 94730187 5618 + protein coding gene zinc finger, X-linked, duplicated B
Gm39526 X 94731399 to 94745359 13960 + lincRNA gene predicted gene, 39526
Gm7061 X 94772619 to 94774034 1415 - pseudogene predicted gene 7061
Cpgi22836 X 94773755 to 94774234 479 CpG island CpG island 22836
Gm14830 X 94774978 to 94775677 699 - pseudogene predicted gene 14830
Tssr161495 X 94789676 to 94789686 10 + TSS region transcription start site region 161495
Rpl13-ps5 X 94789717 to 94790346 629 + pseudogene ribosomal protein L13, pseudogene 5
Gm26617 X 94793103 to 94798237 5134 + lincRNA gene predicted gene, 26617
Zxda X 94795563 to 94798183 2620 - pseudogene zinc finger, X-linked, duplicated A
Gm36695 X 94827768 to 94858939 31171 + lncRNA gene predicted gene, 36695
DXMit113b X 94833381 to 94833476 95 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 113b
Cpgi22837 X 94990577 to 94990820 243 CpG island CpG island 22837
Gm371 X 94997439 to 94998683 1244 - pseudogene predicted pseudogene 371
Tssr163795 X 94999007 to 94999018 11 - TSS region transcription start site region 163795
Spin4 X 95022510 to 95026682 4172 - protein coding gene spindlin family, member 4
Cpgi22838 X 95025995 to 95026815 820 CpG island CpG island 22838
Tssr163796 X 95026671 to 95026701 30 - TSS region transcription start site region 163796
Arhgef9 X 95048930 to 95196851 147921 - protein coding gene CDC42 guanine nucleotide exchange factor (GEF) 9
Lgth14 X 151000000 to 95000000 -56000000 QTL body length 14
Wght12 X 151000000 to 95000000 -56000000 QTL weight 12