Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:92596474-93906606

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mageb18 X 92118879 to 92599572 480693 - protein coding gene melanoma antigen family B, 18
Tssr163763 X 92680023 to 92680054 31 - TSS region transcription start site region 163763
Tssr5647 X 92837468 to 92837474 6 + TSS region transcription start site region 5647
Gm25332 X 92882451 to 92882555 104 + snRNA gene predicted gene, 25332
Gm38657 X 92934936 to 93057944 123008 - lncRNA gene predicted gene, 38657
Gm24973 X 92989095 to 92989195 100 - miRNA gene predicted gene, 24973
Tssr161473 X 93094406 to 93094407 1 + TSS region transcription start site region 161473
1700003E24Rik X 93156221 to 93156873 652 + lincRNA gene RIKEN cDNA 1700003E24 gene
Gm24123 X 93164902 to 93164984 82 + snoRNA gene predicted gene, 24123
BC061195 X 93183227 to 93183946 719 + lincRNA gene cDNA sequence BC061195
Gm23454 X 93251474 to 93251606 132 + snoRNA gene predicted gene, 23454
DXMit128 X 93263065 to 93263152 87 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 128
Mdmsc6 X 93263065 to 93263152 87 QTL modifier of muscularity 6
Cpgi22819 X 93286467 to 93286623 156 CpG island CpG island 22819
Tssr161474 X 93286499 to 93286522 23 + TSS region transcription start site region 161474
Arx X 93286507 to 93298357 11850 + protein coding gene aristaless related homeobox
Cpgi22820 X 93288425 to 93289558 1133 CpG island CpG island 22820
Cpgi22821 X 93297069 to 93297596 527 CpG island CpG island 22821
Cpgi22822 X 93299055 to 93299413 358 CpG island CpG island 22822
Pola1 X 93304767 to 93632155 327388 - protein coding gene polymerase (DNA directed), alpha 1
Gm35587 X 93401285 to 93434706 33421 + lncRNA gene predicted gene, 35587
Gm14780 X 93527573 to 93530309 2736 + pseudogene predicted gene 14780
Gm23557 X 93573731 to 93573868 137 - snoRNA gene predicted gene, 23557
Cpgi22823 X 93631977 to 93632396 419 CpG island CpG island 22823
Tssr163764 X 93632113 to 93632186 73 - TSS region transcription start site region 163764
Gm6985 X 93638614 to 93638884 270 + pseudogene predicted pseudogene 6985
Pcyt1b X 93654863 to 93749951 95088 + protein coding gene phosphate cytidylyltransferase 1, choline, beta isoform
Tssr161475 X 93654970 to 93654981 11 + TSS region transcription start site region 161475
Tssr161476 X 93675088 to 93675161 73 + TSS region transcription start site region 161476
Tssr161477 X 93675343 to 93675376 33 + TSS region transcription start site region 161477
Tssr161478 X 93675404 to 93675433 29 + TSS region transcription start site region 161478
Tssr161479 X 93701091 to 93701102 11 + TSS region transcription start site region 161479
Gm46688 X 93702182 to 93715505 13323 - lncRNA gene predicted gene, 46688
Gm35641 X 93715634 to 93745418 29784 - lncRNA gene predicted gene, 35641
Pdk3 X 93764616 to 93832095 67479 - protein coding gene pyruvate dehydrogenase kinase, isoenzyme 3
Tssr163765 X 93796290 to 93796294 4 - TSS region transcription start site region 163765
Tssr161480 X 93807005 to 93807012 7 + TSS region transcription start site region 161480
Gm46689 X 93826008 to 93827308 1300 - lncRNA gene predicted gene, 46689
Cpgi22824 X 93831625 to 93832438 813 CpG island CpG island 22824
Tssr163766 X 93831893 to 93831904 11 - TSS region transcription start site region 163766
Tssr163767 X 93832020 to 93832031 11 - TSS region transcription start site region 163767
Tssr5648 X 93832084 to 93832094 10 - TSS region transcription start site region 5648
Tssr163768 X 93832106 to 93832199 93 - TSS region transcription start site region 163768
Tssr163769 X 93832666 to 93832681 15 - TSS region transcription start site region 163769
Tssr163770 X 93832701 to 93832713 12 - TSS region transcription start site region 163770