Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:87043954-89744264

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha2 X 40832621 to 87216531 46383910 QTL sperm head anomaly 2
Il1rapl1 X 86747242 to 88115623 1368381 - protein coding gene interleukin 1 receptor accessory protein-like 1
DXMit93 X 87069402 to 87069601 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 93
Tssr163744 X 87172888 to 87172898 10 - TSS region transcription start site region 163744
DXMit147 X 87216315 to 87216531 216 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 147
Tssr163745 X 87238125 to 87238129 4 - TSS region transcription start site region 163745
Tssr161456 X 87238348 to 87238364 16 + TSS region transcription start site region 161456
Tssr161457 X 87238370 to 87238377 7 + TSS region transcription start site region 161457
Tssr163746 X 87238375 to 87238416 41 - TSS region transcription start site region 163746
Tssr163747 X 87268852 to 87268855 3 - TSS region transcription start site region 163747
Gm18920 X 87322642 to 87323173 531 + pseudogene predicted gene, 18920
Gm18794 X 87519324 to 87520312 988 - pseudogene predicted gene, 18794
Gm8855 X 87672992 to 87673810 818 - pseudogene predicted gene 8855
2900005I04Rik X 87680714 to 87681826 1112 unclassified non-coding RNA gene RIKEN cDNA 2900005I04 gene
Tssr163748 X 87762703 to 87762707 4 - TSS region transcription start site region 163748
Tssr163749 X 87763749 to 87763772 23 - TSS region transcription start site region 163749
Gm14776 X 87771462 to 87772286 824 - pseudogene predicted gene 14776
Tssr163750 X 87779696 to 87779700 4 - TSS region transcription start site region 163750
Tssr163751 X 87854215 to 87854228 13 - TSS region transcription start site region 163751
Gm24812 X 87899205 to 87899488 283 - unclassified non-coding RNA gene predicted gene, 24812
Tssr161458 X 87921150 to 87921153 3 + TSS region transcription start site region 161458
Gm14774 X 88036371 to 88036906 535 - pseudogene predicted gene 14774
Tssr163752 X 88115597 to 88115626 29 - TSS region transcription start site region 163752
Tssr163753 X 88115632 to 88115675 43 - TSS region transcription start site region 163753
Tssr163754 X 88115903 to 88115928 25 - TSS region transcription start site region 163754
Tssr163755 X 88115937 to 88115956 19 - TSS region transcription start site region 163755
Gm25006 X 88192617 to 88192723 106 + snRNA gene predicted gene, 25006
Gm8858 X 88388559 to 88388900 341 + pseudogene predicted gene 8858
Gm14793 X 88393954 to 88394264 310 + pseudogene predicted gene 14793
Gm8864 X 88572051 to 88573060 1009 - pseudogene predicted gene 8864
Tssr161459 X 88580383 to 88580387 4 + TSS region transcription start site region 161459
Tssr161460 X 88607232 to 88607236 4 + TSS region transcription start site region 161460
Gm14795 X 88613357 to 88613827 470 + pseudogene predicted gene 14795
Gm14792 X 88684764 to 88685021 257 - pseudogene predicted gene 14792
Ppp4r3c-ps X 88729873 to 88732272 2399 + pseudogene protein phosphatase 4 regulatory subunit 3C, pseudogene
Gm14794 X 88749452 to 88749643 191 + pseudogene predicted gene 14794
Gm8876 X 88755577 to 88756695 1118 - pseudogene predicted gene 8876
Gm27000 X 88759471 to 88760312 841 - lincRNA gene predicted gene, 27000
Mir1906-2 X 88759474 to 88759553 79 - miRNA gene microRNA 1906-2
Gm27335 X 88759659 to 88759755 96 - unclassified non-coding RNA gene predicted gene, 27335
Tssr163756 X 88760221 to 88760248 27 - TSS region transcription start site region 163756
Tssr163757 X 88760318 to 88760319 1 - TSS region transcription start site region 163757
Gm5759 X 88897696 to 88898491 795 - pseudogene predicted gene 5759
Tssr161461 X 88959183 to 88959184 1 + TSS region transcription start site region 161461
Gm8880 X 88959217 to 88959670 453 + pseudogene predicted gene 8880
Gm16412 X 89005370 to 89005642 272 + pseudogene predicted pseudogene 16412
Gm14791 X 89059376 to 89060541 1165 - pseudogene predicted gene 14791
Gm14796 X 89087096 to 89088054 958 - pseudogene predicted gene 14796
Gm14797 X 89111017 to 89112496 1479 - pseudogene predicted gene 14797
DXMit211 X 89145523 to 89145635 112 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 211
Gm649 X 89281130 to 89281597 467 - pseudogene predicted gene 649
Gm18439 X 89336718 to 89337233 515 - pseudogene predicted gene, 18439
Gm14805 X 89397111 to 89397450 339 + pseudogene predicted gene 14805
Pet2 X 89403848 to 89409689 5841 - protein coding gene plasmacytoma expressed transcript 2
Gm14804 X 89418768 to 89419275 507 - pseudogene predicted gene 14804
Gm6973 X 89440175 to 89440895 720 - pseudogene predicted gene 6973
Tssr161462 X 89651718 to 89651745 27 + TSS region transcription start site region 161462