Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:85861054-86941064

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr161445 X 85870221 to 85870251 30 + TSS region transcription start site region 161445
Tssr161446 X 85870266 to 85870297 31 + TSS region transcription start site region 161446
Tssr161447 X 85870324 to 85870335 11 + TSS region transcription start site region 161447
5430427O19Rik X 85870354 to 85891499 21145 + protein coding gene RIKEN cDNA 5430427O19 gene
Tssr161448 X 85870378 to 85870389 11 + TSS region transcription start site region 161448
Tssr161449 X 85870705 to 85870713 8 + TSS region transcription start site region 161449
Tssr161450 X 85871723 to 85871728 5 + TSS region transcription start site region 161450
Tssr163739 X 85886761 to 85886775 14 - TSS region transcription start site region 163739
Gm14772 X 86032656 to 86033169 513 - pseudogene predicted gene 14772
Tssr161451 X 86044186 to 86044203 17 + TSS region transcription start site region 161451
Samt3 X 86044199 to 86047313 3114 + protein coding gene spermatogenesis associated multipass transmembrane protein 3
Tssr161452 X 86044204 to 86044214 10 + TSS region transcription start site region 161452
Cpgi22818 X 86191686 to 86192760 1074 CpG island CpG island 22818
Tssr161453 X 86191731 to 86191739 8 + TSS region transcription start site region 161453
Tssr161454 X 86191766 to 86191782 16 + TSS region transcription start site region 161454
Nr0b1 X 86191775 to 86195947 4172 + protein coding gene nuclear receptor subfamily 0, group B, member 1
Mageb4 X 86250256 to 86256219 5963 - protein coding gene melanoma antigen, family B, 4
Gm19043 X 86265577 to 86267013 1436 + pseudogene predicted gene, 19043
Gm8839 X 86270712 to 86272356 1644 + pseudogene predicted gene 8839
Mageb10-ps X 86299922 to 86301328 1406 - pseudogene melanoma antigen, family B, 10, pseudogene
Gm19044 X 86311145 to 86312756 1611 + pseudogene predicted gene, 19044
Gm8844 X 86316083 to 86318696 2613 + pseudogene predicted gene 8844
Mageb8-ps X 86327943 to 86328935 992 - pseudogene melanoma antigen, family B, 8, pseudogene
Gm41 X 86344823 to 86345845 1022 - pseudogene predicted pseudogene 41
Tssr163740 X 86354948 to 86354991 43 - TSS region transcription start site region 163740
Mageb6-ps X 86370799 to 86371830 1031 - pseudogene melanoma antigen, family B, 6, pseudogene
Gm18438 X 86387940 to 86388532 592 - pseudogene predicted gene, 18438
Mageb7-ps X 86398203 to 86399243 1040 - pseudogene melanoma antigen, family B, 7, pseudogene
Tssr163741 X 86401054 to 86401064 10 - TSS region transcription start site region 163741
n-R5s10 X 86406128 to 86406246 118 - rRNA gene nuclear encoded rRNA 5S 10
Gm39524 X 86713268 to 86722630 9362 - lncRNA gene predicted gene, 39524
Tssr163742 X 86746564 to 86746566 2 - TSS region transcription start site region 163742
Il1rapl1 X 86747242 to 88115623 1368381 - protein coding gene interleukin 1 receptor accessory protein-like 1
Tssr161455 X 86770468 to 86770475 7 + TSS region transcription start site region 161455
Gm14775 X 86792474 to 86792783 309 + pseudogene predicted gene 14775