Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:85612242-89250623

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spha2 X 40832621 to 87216531 46383910 QTL sperm head anomaly 2
Tab3 X 85574022 to 85634469 60447 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 3
Gm39523 X 85609354 to 85614228 4874 - lncRNA gene predicted gene, 39523
Tssr161441 X 85614609 to 85614626 17 + TSS region transcription start site region 161441
Tssr163732 X 85700357 to 85700363 6 - TSS region transcription start site region 163732
Gk X 85701937 to 85776819 74882 - protein coding gene glycerol kinase
Gm14767 X 85716438 to 85717023 585 + pseudogene predicted gene 14767
Tssr161442 X 85716540 to 85716551 11 + TSS region transcription start site region 161442
E130114A11Rik X 85733875 to 85736831 2956 unclassified gene RIKEN cDNA E130114A11 gene
Tssr163733 X 85738707 to 85738744 37 - TSS region transcription start site region 163733
Gm14764 X 85744348 to 85749764 5416 + antisense lncRNA gene predicted gene 14764
Tssr163734 X 85775619 to 85775622 3 - TSS region transcription start site region 163734
Cpgi22817 X 85776330 to 85777254 924 CpG island CpG island 22817
Tssr163735 X 85776537 to 85776548 11 - TSS region transcription start site region 163735
Tssr163736 X 85776555 to 85776580 25 - TSS region transcription start site region 163736
Tssr163737 X 85776606 to 85776643 37 - TSS region transcription start site region 163737
Tssr163738 X 85776644 to 85776658 14 - TSS region transcription start site region 163738
Tssr161443 X 85776934 to 85776958 24 + TSS region transcription start site region 161443
Tssr161444 X 85777010 to 85777020 10 + TSS region transcription start site region 161444
Gm14766 X 85790873 to 85791239 366 + pseudogene predicted gene 14766
Gm6964 X 85793684 to 85794120 436 - pseudogene predicted gene 6964
Gm14761 X 85823168 to 85823429 261 + pseudogene predicted gene 14761
Gm14762 X 85825236 to 85827656 2420 + lincRNA gene predicted gene 14762
Tssr161445 X 85870221 to 85870251 30 + TSS region transcription start site region 161445
Tssr161446 X 85870266 to 85870297 31 + TSS region transcription start site region 161446
Tssr161447 X 85870324 to 85870335 11 + TSS region transcription start site region 161447
5430427O19Rik X 85870354 to 85891499 21145 + protein coding gene RIKEN cDNA 5430427O19 gene
Tssr161448 X 85870378 to 85870389 11 + TSS region transcription start site region 161448
Tssr161449 X 85870705 to 85870713 8 + TSS region transcription start site region 161449
Tssr161450 X 85871723 to 85871728 5 + TSS region transcription start site region 161450
Tssr163739 X 85886761 to 85886775 14 - TSS region transcription start site region 163739
Gm14772 X 86032656 to 86033169 513 - pseudogene predicted gene 14772
Tssr161451 X 86044186 to 86044203 17 + TSS region transcription start site region 161451
Samt3 X 86044199 to 86047313 3114 + protein coding gene spermatogenesis associated multipass transmembrane protein 3
Tssr161452 X 86044204 to 86044214 10 + TSS region transcription start site region 161452
Cpgi22818 X 86191686 to 86192760 1074 CpG island CpG island 22818
Tssr161453 X 86191731 to 86191739 8 + TSS region transcription start site region 161453
Tssr161454 X 86191766 to 86191782 16 + TSS region transcription start site region 161454
Nr0b1 X 86191775 to 86195947 4172 + protein coding gene nuclear receptor subfamily 0, group B, member 1
Mageb4 X 86250256 to 86256219 5963 - protein coding gene melanoma antigen, family B, 4
Gm19043 X 86265577 to 86267013 1436 + pseudogene predicted gene, 19043
Gm8839 X 86270712 to 86272356 1644 + pseudogene predicted gene 8839
Mageb10-ps X 86299922 to 86301328 1406 - pseudogene melanoma antigen, family B, 10, pseudogene
Gm19044 X 86311145 to 86312756 1611 + pseudogene predicted gene, 19044
Gm8844 X 86316083 to 86318696 2613 + pseudogene predicted gene 8844
Mageb8-ps X 86327943 to 86328935 992 - pseudogene melanoma antigen, family B, 8, pseudogene
Gm41 X 86344823 to 86345845 1022 - pseudogene predicted pseudogene 41
Tssr163740 X 86354948 to 86354991 43 - TSS region transcription start site region 163740
Mageb6-ps X 86370799 to 86371830 1031 - pseudogene melanoma antigen, family B, 6, pseudogene
Gm18438 X 86387940 to 86388532 592 - pseudogene predicted gene, 18438
Mageb7-ps X 86398203 to 86399243 1040 - pseudogene melanoma antigen, family B, 7, pseudogene
Tssr163741 X 86401054 to 86401064 10 - TSS region transcription start site region 163741
n-R5s10 X 86406128 to 86406246 118 - rRNA gene nuclear encoded rRNA 5S 10
Gm39524 X 86713268 to 86722630 9362 - lncRNA gene predicted gene, 39524
Tssr163742 X 86746564 to 86746566 2 - TSS region transcription start site region 163742
Il1rapl1 X 86747242 to 88115623 1368381 - protein coding gene interleukin 1 receptor accessory protein-like 1
Tssr161455 X 86770468 to 86770475 7 + TSS region transcription start site region 161455
Gm14775 X 86792474 to 86792783 309 + pseudogene predicted gene 14775
Tssr163743 X 86997672 to 86997676 4 - TSS region transcription start site region 163743
DXMit93 X 87069402 to 87069601 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 93
Tssr163744 X 87172888 to 87172898 10 - TSS region transcription start site region 163744
DXMit147 X 87216315 to 87216531 216 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 147
Tssr163745 X 87238125 to 87238129 4 - TSS region transcription start site region 163745
Tssr161456 X 87238348 to 87238364 16 + TSS region transcription start site region 161456
Tssr161457 X 87238370 to 87238377 7 + TSS region transcription start site region 161457
Tssr163746 X 87238375 to 87238416 41 - TSS region transcription start site region 163746
Tssr163747 X 87268852 to 87268855 3 - TSS region transcription start site region 163747
Gm18920 X 87322642 to 87323173 531 + pseudogene predicted gene, 18920
Gm18794 X 87519324 to 87520312 988 - pseudogene predicted gene, 18794
Gm8855 X 87672992 to 87673810 818 - pseudogene predicted gene 8855
2900005I04Rik X 87680714 to 87681826 1112 unclassified non-coding RNA gene RIKEN cDNA 2900005I04 gene
Tssr163748 X 87762703 to 87762707 4 - TSS region transcription start site region 163748
Tssr163749 X 87763749 to 87763772 23 - TSS region transcription start site region 163749
Gm14776 X 87771462 to 87772286 824 - pseudogene predicted gene 14776
Tssr163750 X 87779696 to 87779700 4 - TSS region transcription start site region 163750
Tssr163751 X 87854215 to 87854228 13 - TSS region transcription start site region 163751
Gm24812 X 87899205 to 87899488 283 - unclassified non-coding RNA gene predicted gene, 24812
Tssr161458 X 87921150 to 87921153 3 + TSS region transcription start site region 161458
Gm14774 X 88036371 to 88036906 535 - pseudogene predicted gene 14774
Tssr163752 X 88115597 to 88115626 29 - TSS region transcription start site region 163752
Tssr163753 X 88115632 to 88115675 43 - TSS region transcription start site region 163753
Tssr163754 X 88115903 to 88115928 25 - TSS region transcription start site region 163754
Tssr163755 X 88115937 to 88115956 19 - TSS region transcription start site region 163755
Gm25006 X 88192617 to 88192723 106 + snRNA gene predicted gene, 25006
Gm8858 X 88388559 to 88388900 341 + pseudogene predicted gene 8858
Gm14793 X 88393954 to 88394264 310 + pseudogene predicted gene 14793
Gm8864 X 88572051 to 88573060 1009 - pseudogene predicted gene 8864
Tssr161459 X 88580383 to 88580387 4 + TSS region transcription start site region 161459
Tssr161460 X 88607232 to 88607236 4 + TSS region transcription start site region 161460
Gm14795 X 88613357 to 88613827 470 + pseudogene predicted gene 14795
Gm14792 X 88684764 to 88685021 257 - pseudogene predicted gene 14792
Ppp4r3c-ps X 88729873 to 88732272 2399 + pseudogene protein phosphatase 4 regulatory subunit 3C, pseudogene
Gm14794 X 88749452 to 88749643 191 + pseudogene predicted gene 14794
Gm8876 X 88755577 to 88756695 1118 - pseudogene predicted gene 8876
Gm27000 X 88759471 to 88760312 841 - lincRNA gene predicted gene, 27000
Mir1906-2 X 88759474 to 88759553 79 - miRNA gene microRNA 1906-2
Gm27335 X 88759659 to 88759755 96 - unclassified non-coding RNA gene predicted gene, 27335
Tssr163756 X 88760221 to 88760248 27 - TSS region transcription start site region 163756
Tssr163757 X 88760318 to 88760319 1 - TSS region transcription start site region 163757
Gm5759 X 88897696 to 88898491 795 - pseudogene predicted gene 5759
Tssr161461 X 88959183 to 88959184 1 + TSS region transcription start site region 161461
Gm8880 X 88959217 to 88959670 453 + pseudogene predicted gene 8880
Gm16412 X 89005370 to 89005642 272 + pseudogene predicted pseudogene 16412
Gm14791 X 89059376 to 89060541 1165 - pseudogene predicted gene 14791
Gm14796 X 89087096 to 89088054 958 - pseudogene predicted gene 14796
Gm14797 X 89111017 to 89112496 1479 - pseudogene predicted gene 14797
DXMit211 X 89145523 to 89145635 112 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 211