Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:85272656-86793169

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm14765 X 85431827 to 85432152 325 + pseudogene predicted gene 14765
DXMit195 X 85553610 to 85553700 90 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 195
Cpgi22816 X 85573659 to 85574563 904 CpG island CpG island 22816
Tssr161439 X 85573983 to 85574017 34 + TSS region transcription start site region 161439
Tssr161440 X 85574018 to 85574039 21 + TSS region transcription start site region 161440
Tab3 X 85574022 to 85634469 60447 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 3
Gm44378 X 85588977 to 85589059 82 + miRNA gene predicted gene, 44378
Gm39523 X 85609354 to 85614228 4874 - lncRNA gene predicted gene, 39523
Tssr161441 X 85614609 to 85614626 17 + TSS region transcription start site region 161441
Tssr163732 X 85700357 to 85700363 6 - TSS region transcription start site region 163732
Gk X 85701937 to 85776819 74882 - protein coding gene glycerol kinase
Gm14767 X 85716438 to 85717023 585 + pseudogene predicted gene 14767
Tssr161442 X 85716540 to 85716551 11 + TSS region transcription start site region 161442
E130114A11Rik X 85733875 to 85736831 2956 unclassified gene RIKEN cDNA E130114A11 gene
Tssr163733 X 85738707 to 85738744 37 - TSS region transcription start site region 163733
Gm14764 X 85744348 to 85749764 5416 + antisense lncRNA gene predicted gene 14764
Tssr163734 X 85775619 to 85775622 3 - TSS region transcription start site region 163734
Cpgi22817 X 85776330 to 85777254 924 CpG island CpG island 22817
Tssr163735 X 85776537 to 85776548 11 - TSS region transcription start site region 163735
Tssr163736 X 85776555 to 85776580 25 - TSS region transcription start site region 163736
Tssr163737 X 85776606 to 85776643 37 - TSS region transcription start site region 163737
Tssr163738 X 85776644 to 85776658 14 - TSS region transcription start site region 163738
Tssr161443 X 85776934 to 85776958 24 + TSS region transcription start site region 161443
Tssr161444 X 85777010 to 85777020 10 + TSS region transcription start site region 161444
Gm14766 X 85790873 to 85791239 366 + pseudogene predicted gene 14766
Gm6964 X 85793684 to 85794120 436 - pseudogene predicted gene 6964
Gm14761 X 85823168 to 85823429 261 + pseudogene predicted gene 14761
Gm14762 X 85825236 to 85827656 2420 + lincRNA gene predicted gene 14762
Tssr161445 X 85870221 to 85870251 30 + TSS region transcription start site region 161445
Tssr161446 X 85870266 to 85870297 31 + TSS region transcription start site region 161446
Tssr161447 X 85870324 to 85870335 11 + TSS region transcription start site region 161447
5430427O19Rik X 85870354 to 85891499 21145 + protein coding gene RIKEN cDNA 5430427O19 gene
Tssr161448 X 85870378 to 85870389 11 + TSS region transcription start site region 161448
Tssr161449 X 85870705 to 85870713 8 + TSS region transcription start site region 161449
Tssr161450 X 85871723 to 85871728 5 + TSS region transcription start site region 161450
Tssr163739 X 85886761 to 85886775 14 - TSS region transcription start site region 163739
Gm14772 X 86032656 to 86033169 513 - pseudogene predicted gene 14772
Tssr161451 X 86044186 to 86044203 17 + TSS region transcription start site region 161451
Samt3 X 86044199 to 86047313 3114 + protein coding gene spermatogenesis associated multipass transmembrane protein 3
Tssr161452 X 86044204 to 86044214 10 + TSS region transcription start site region 161452
Cpgi22818 X 86191686 to 86192760 1074 CpG island CpG island 22818
Tssr161453 X 86191731 to 86191739 8 + TSS region transcription start site region 161453
Tssr161454 X 86191766 to 86191782 16 + TSS region transcription start site region 161454
Nr0b1 X 86191775 to 86195947 4172 + protein coding gene nuclear receptor subfamily 0, group B, member 1
Mageb4 X 86250256 to 86256219 5963 - protein coding gene melanoma antigen, family B, 4
Gm19043 X 86265577 to 86267013 1436 + pseudogene predicted gene, 19043
Gm8839 X 86270712 to 86272356 1644 + pseudogene predicted gene 8839
Mageb10-ps X 86299922 to 86301328 1406 - pseudogene melanoma antigen, family B, 10, pseudogene
Gm19044 X 86311145 to 86312756 1611 + pseudogene predicted gene, 19044
Gm8844 X 86316083 to 86318696 2613 + pseudogene predicted gene 8844
Mageb8-ps X 86327943 to 86328935 992 - pseudogene melanoma antigen, family B, 8, pseudogene
Gm41 X 86344823 to 86345845 1022 - pseudogene predicted pseudogene 41
Tssr163740 X 86354948 to 86354991 43 - TSS region transcription start site region 163740
Mageb6-ps X 86370799 to 86371830 1031 - pseudogene melanoma antigen, family B, 6, pseudogene
Gm18438 X 86387940 to 86388532 592 - pseudogene predicted gene, 18438
Mageb7-ps X 86398203 to 86399243 1040 - pseudogene melanoma antigen, family B, 7, pseudogene
Tssr163741 X 86401054 to 86401064 10 - TSS region transcription start site region 163741
n-R5s10 X 86406128 to 86406246 118 - rRNA gene nuclear encoded rRNA 5S 10
Gm39524 X 86713268 to 86722630 9362 - lncRNA gene predicted gene, 39524
Tssr163742 X 86746564 to 86746566 2 - TSS region transcription start site region 163742
Il1rapl1 X 86747242 to 88115623 1368381 - protein coding gene interleukin 1 receptor accessory protein-like 1
Tssr161455 X 86770468 to 86770475 7 + TSS region transcription start site region 161455
Gm14775 X 86792474 to 86792783 309 + pseudogene predicted gene 14775