Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:8361857-9552458

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssxb9 X 8366978 to 8375388 8410 + protein coding gene synovial sarcoma, X member B9
Ssxb1 X 8413305 to 8422157 8852 + protein coding gene synovial sarcoma, X member B1
Ssxb2 X 8454345 to 8461726 7381 - protein coding gene synovial sarcoma, X member B2
Gm14459 X 8514052 to 8524954 10902 - protein coding gene predicted gene 14459
Ssxb6 X 8542608 to 8548255 5647 - protein coding gene synovial sarcoma, X member B6
Ssxb3 X 8583404 to 8591810 8406 - protein coding gene synovial sarcoma, X member B3
Gm14500 X 8604420 to 8604532 112 + pseudogene predicted gene 14500
Gm6797 X 8639622 to 8645273 5651 + pseudogene predicted pseudogene 6797
Gm6798 X 8654466 to 8654825 359 + pseudogene predicted gene 6798
Gm9430 X 8662302 to 8663828 1526 - pseudogene predicted gene 9430
Ssxb8 X 8684887 to 8690844 5957 - protein coding gene synovial sarcoma, X member B8
Ssx9 X 8748432 to 8754587 6155 + protein coding gene synovial sarcoma, X 9
Ssxb5 X 8803691 to 8809386 5695 + protein coding gene synovial sarcoma, X member B5
Gm14502 X 8830322 to 8830434 112 - pseudogene predicted gene 14502
Gm6592 X 8843994 to 8849607 5613 + protein coding gene predicted gene 6592
Gm5751 X 8871568 to 8875407 3839 + protein coding gene predicted gene 5751
Tssr160504 X 8892354 to 8892372 18 + TSS region transcription start site region 160504
Tssr160505 X 8892376 to 8892423 47 + TSS region transcription start site region 160505
Cpgi22597 X 8892378 to 8893857 1479 CpG island CpG island 22597
B630019K06Rik X 8892382 to 8894964 2582 + protein coding gene RIKEN cDNA B630019K06 gene
Tssr160506 X 8892443 to 8892454 11 + TSS region transcription start site region 160506
Tssr162869 X 8892912 to 8892930 18 - TSS region transcription start site region 162869
Tssr162870 X 8892938 to 8892956 18 - TSS region transcription start site region 162870
Tssr160507 X 8893021 to 8893077 56 + TSS region transcription start site region 160507
DXMit161 X 8898732 to 8898852 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 161
Gm14504 X 8922487 to 8923983 1496 - pseudogene predicted gene 14504
Gm5752 X 8941590 to 8942183 593 - pseudogene predicted gene 5752
Gm16479 X 8956857 to 8957458 601 + pseudogene predicted gene 16479
Gm14510 X 8959312 to 8960403 1091 + pseudogene predicted gene 14510
Fthl17b X 8962134 to 8962975 841 - protein coding gene ferritin, heavy polypeptide-like 17, member B
Gm14509 X 8971505 to 8972790 1285 + pseudogene predicted gene 14509
Fthl17c X 8975718 to 8976559 841 - protein coding gene ferritin, heavy polypeptide-like 17, member C
Gm14457 X 8981822 to 8982982 1160 + pseudogene predicted gene 14457
Fthl17d X 8985940 to 8986672 732 - protein coding gene ferritin, heavy polypeptide-like 17, member D
Gm19775 X 8989425 to 8990166 741 - pseudogene predicted gene, 19775
Gm9431 X 9009027 to 9010077 1050 - pseudogene predicted gene 9431
Gm14865 X 9030084 to 9030744 660 + pseudogene predicted gene 14865
Fthl17e X 9033493 to 9034333 840 + protein coding gene ferritin, heavy polypeptide-like 17, member E
Gm14503 X 9037157 to 9038320 1163 - pseudogene predicted gene 14503
Fthl17-ps1 X 9043727 to 9044242 515 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 1
Gm14864 X 9046087 to 9047173 1086 - pseudogene predicted gene 14864
Gm5379 X 9049287 to 9050112 825 - pseudogene predicted gene 5379
Fthl17f X 9063090 to 9063822 732 + protein coding gene ferritin, heavy polypeptide-like 17, member F
Gm16480 X 9066035 to 9066866 831 - pseudogene predicted gene 16480
Fthl17-ps2 X 9080044 to 9080571 527 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 2
4930402K13Rik X 9104562 to 9106342 1780 + protein coding gene RIKEN cDNA 4930402K13 gene
Tssr160508 X 9104610 to 9104617 7 + TSS region transcription start site region 160508
Tssr160509 X 9115989 to 9116022 33 + TSS region transcription start site region 160509
Fthl17-ps3 X 9123467 to 9123979 512 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 3
Cpgi22598 X 9199738 to 9200946 1208 CpG island CpG island 22598
Tssr160510 X 9199865 to 9199907 42 + TSS region transcription start site region 160510
Tssr160511 X 9199964 to 9200000 36 + TSS region transcription start site region 160511
Lancl3 X 9199973 to 9268085 68112 + protein coding gene LanC lantibiotic synthetase component C-like 3 (bacterial)
Tssr160512 X 9200024 to 9200039 15 + TSS region transcription start site region 160512
Gm14862 X 9250928 to 9256899 5971 - protein coding gene predicted gene 14862
Tssr162871 X 9256900 to 9256917 17 - TSS region transcription start site region 162871
Tssr162872 X 9256926 to 9256937 11 - TSS region transcription start site region 162872
Tssr160513 X 9270250 to 9270252 2 + TSS region transcription start site region 160513
Cpgi22599 X 9272415 to 9273398 983 CpG island CpG island 22599
Tssr160514 X 9272671 to 9272693 22 + TSS region transcription start site region 160514
Tssr160515 X 9272760 to 9272805 45 + TSS region transcription start site region 160515
Xk X 9272784 to 9313245 40461 + protein coding gene X-linked Kx blood group
Tssr160516 X 9272808 to 9272854 46 + TSS region transcription start site region 160516
H2al1m X 9283764 to 9284288 524 + protein coding gene H2A histone family member L1M
DXMit136 X 9300420 to 9300605 185 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 136
Gm25481 X 9317819 to 9317976 157 + snRNA gene predicted gene, 25481
Gm6829 X 9327749 to 9328108 359 - pseudogene predicted pseudogene 6829
Gm4055 X 9328974 to 9332606 3632 protein coding gene predicted gene 4055
DXMit124a X 9335756 to 9335934 178 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 124a
Pbwg10 X 9335756 to 9335934 178 QTL postnatal body weight growth 10
Gm14863 X 9344026 to 9344332 306 + pseudogene predicted gene 14863
H2al1k X 9350627 to 9351136 509 + protein coding gene H2A histone family member L1K
Cybb X 9435252 to 9487766 52514 - protein coding gene cytochrome b-245, beta polypeptide
Tssr160517 X 9435493 to 9435499 6 + TSS region transcription start site region 160517
Tssr162873 X 9435609 to 9435648 39 - TSS region transcription start site region 162873
Tssr162874 X 9435884 to 9435904 20 - TSS region transcription start site region 162874
Tssr162875 X 9435910 to 9435927 17 - TSS region transcription start site region 162875
Tssr160518 X 9435952 to 9436001 49 + TSS region transcription start site region 160518
Tssr162876 X 9436066 to 9436083 17 - TSS region transcription start site region 162876
Tssr162877 X 9436087 to 9436102 15 - TSS region transcription start site region 162877
Tssr162878 X 9436139 to 9436154 15 - TSS region transcription start site region 162878
Tssr162879 X 9436248 to 9436260 12 - TSS region transcription start site region 162879
Tssr162880 X 9436314 to 9436346 32 - TSS region transcription start site region 162880
Tssr162881 X 9436350 to 9436364 14 - TSS region transcription start site region 162881
Tssr160519 X 9436630 to 9436645 15 + TSS region transcription start site region 160519
Tssr160520 X 9436654 to 9436709 55 + TSS region transcription start site region 160520
Tssr162882 X 9436661 to 9436664 3 - TSS region transcription start site region 162882
Tssr160521 X 9436741 to 9436763 22 + TSS region transcription start site region 160521
Tssr160522 X 9436872 to 9436880 8 + TSS region transcription start site region 160522
Tssr162883 X 9437041 to 9437054 13 - TSS region transcription start site region 162883
Tssr162884 X 9437083 to 9437119 36 - TSS region transcription start site region 162884
Tssr162885 X 9437127 to 9437155 28 - TSS region transcription start site region 162885
Tssr162886 X 9437174 to 9437175 1 - TSS region transcription start site region 162886
Tssr162887 X 9437201 to 9437213 12 - TSS region transcription start site region 162887
Tssr162888 X 9437254 to 9437267 13 - TSS region transcription start site region 162888
Tssr162889 X 9437284 to 9437285 1 - TSS region transcription start site region 162889
Tssr162890 X 9437344 to 9437355 11 - TSS region transcription start site region 162890
Tssr162891 X 9437378 to 9437383 5 - TSS region transcription start site region 162891
Tssr162892 X 9437431 to 9437438 7 - TSS region transcription start site region 162892
Tssr162893 X 9437535 to 9437543 8 - TSS region transcription start site region 162893
Tssr162894 X 9437565 to 9437579 14 - TSS region transcription start site region 162894
Tssr162895 X 9437625 to 9437635 10 - TSS region transcription start site region 162895
Tssr162896 X 9437651 to 9437662 11 - TSS region transcription start site region 162896
Tssr162897 X 9437678 to 9437693 15 - TSS region transcription start site region 162897
Tssr162898 X 9437702 to 9437713 11 - TSS region transcription start site region 162898
Tssr162899 X 9437848 to 9437853 5 - TSS region transcription start site region 162899
Tssr162900 X 9437858 to 9437871 13 - TSS region transcription start site region 162900
Tssr162901 X 9437889 to 9437900 11 - TSS region transcription start site region 162901
Tssr162902 X 9437971 to 9437983 12 - TSS region transcription start site region 162902
Tssr162903 X 9438032 to 9438037 5 - TSS region transcription start site region 162903
Tssr162904 X 9438133 to 9438144 11 - TSS region transcription start site region 162904
Tssr162905 X 9438217 to 9438218 1 - TSS region transcription start site region 162905
Tssr162906 X 9438221 to 9438233 12 - TSS region transcription start site region 162906
Tssr162907 X 9438294 to 9438305 11 - TSS region transcription start site region 162907
Tssr162908 X 9438318 to 9438336 18 - TSS region transcription start site region 162908
Tssr162909 X 9439923 to 9439946 23 - TSS region transcription start site region 162909
Tssr162910 X 9439948 to 9439993 45 - TSS region transcription start site region 162910
Tssr162911 X 9440002 to 9440031 29 - TSS region transcription start site region 162911
Tssr160523 X 9442546 to 9442568 22 + TSS region transcription start site region 160523
Tssr162912 X 9442607 to 9442681 74 - TSS region transcription start site region 162912
Tssr162913 X 9444453 to 9444466 13 - TSS region transcription start site region 162913
Tssr162914 X 9444582 to 9444644 62 - TSS region transcription start site region 162914
Tssr162915 X 9444645 to 9444714 69 - TSS region transcription start site region 162915
Tssr162916 X 9445687 to 9445722 35 - TSS region transcription start site region 162916
Tssr162917 X 9445841 to 9445861 20 - TSS region transcription start site region 162917
Tssr162918 X 9446072 to 9446083 11 - TSS region transcription start site region 162918
Tssr162919 X 9446112 to 9446124 12 - TSS region transcription start site region 162919
Tssr162920 X 9446727 to 9446759 32 - TSS region transcription start site region 162920
Tssr162921 X 9446782 to 9446794 12 - TSS region transcription start site region 162921
Tssr162922 X 9446808 to 9446850 42 - TSS region transcription start site region 162922
Tssr162923 X 9446852 to 9446868 16 - TSS region transcription start site region 162923
Tssr162924 X 9446923 to 9446932 9 - TSS region transcription start site region 162924
Tssr162925 X 9449657 to 9449739 82 - TSS region transcription start site region 162925
Tssr162926 X 9450758 to 9450816 58 - TSS region transcription start site region 162926
Tssr162927 X 9453627 to 9453671 44 - TSS region transcription start site region 162927
Tssr162928 X 9453673 to 9453769 96 - TSS region transcription start site region 162928
Tssr162929 X 9455169 to 9455287 118 - TSS region transcription start site region 162929
Tssr162930 X 9456989 to 9457054 65 - TSS region transcription start site region 162930
Tssr162931 X 9459209 to 9459223 14 - TSS region transcription start site region 162931
Tssr162932 X 9459321 to 9459332 11 - TSS region transcription start site region 162932
Tssr162933 X 9459370 to 9459381 11 - TSS region transcription start site region 162933
Tssr162934 X 9459392 to 9459406 14 - TSS region transcription start site region 162934
Tssr162935 X 9459441 to 9459463 22 - TSS region transcription start site region 162935
Tssr162936 X 9459464 to 9459494 30 - TSS region transcription start site region 162936
Tssr162937 X 9460682 to 9460693 11 - TSS region transcription start site region 162937
Tssr162938 X 9460702 to 9460718 16 - TSS region transcription start site region 162938
Tssr162939 X 9460985 to 9461016 31 - TSS region transcription start site region 162939
Tssr162940 X 9461427 to 9461431 4 - TSS region transcription start site region 162940
Tssr162941 X 9461803 to 9461826 23 - TSS region transcription start site region 162941
Tssr162942 X 9461863 to 9461874 11 - TSS region transcription start site region 162942
Tssr162943 X 9461929 to 9461942 13 - TSS region transcription start site region 162943
Tssr162944 X 9462053 to 9462065 12 - TSS region transcription start site region 162944
Tssr162945 X 9462714 to 9462732 18 - TSS region transcription start site region 162945
Tssr162946 X 9462762 to 9462795 33 - TSS region transcription start site region 162946
Tssr162947 X 9462879 to 9462890 11 - TSS region transcription start site region 162947
Tssr162948 X 9463423 to 9463440 17 - TSS region transcription start site region 162948
Tssr162949 X 9463466 to 9463478 12 - TSS region transcription start site region 162949
Tssr162950 X 9463498 to 9463510 12 - TSS region transcription start site region 162950
Tssr162951 X 9463803 to 9463814 11 - TSS region transcription start site region 162951
Tssr162952 X 9463839 to 9463849 10 - TSS region transcription start site region 162952
Tssr162953 X 9464080 to 9464091 11 - TSS region transcription start site region 162953
Tssr162954 X 9465296 to 9465319 23 - TSS region transcription start site region 162954
Tssr162955 X 9465400 to 9465411 11 - TSS region transcription start site region 162955
Tssr162956 X 9465632 to 9465648 16 - TSS region transcription start site region 162956
Tssr162957 X 9465672 to 9465762 90 - TSS region transcription start site region 162957
Tssr5588 X 9465736 to 9465750 14 + TSS region transcription start site region 5588
Tssr162958 X 9466727 to 9466731 4 - TSS region transcription start site region 162958
Tssr162959 X 9467104 to 9467192 88 - TSS region transcription start site region 162959
Tssr162960 X 9467231 to 9467240 9 - TSS region transcription start site region 162960
Tssr162961 X 9467895 to 9467919 24 - TSS region transcription start site region 162961
Tssr162962 X 9467990 to 9467996 6 - TSS region transcription start site region 162962
Tssr162963 X 9469250 to 9469281 31 - TSS region transcription start site region 162963
Tssr162964 X 9469288 to 9469331 43 - TSS region transcription start site region 162964
Tssr162965 X 9469436 to 9469446 10 - TSS region transcription start site region 162965
Tssr162966 X 9469480 to 9469504 24 - TSS region transcription start site region 162966
Tssr162967 X 9471026 to 9471029 3 - TSS region transcription start site region 162967
Tssr160524 X 9480566 to 9480570 4 + TSS region transcription start site region 160524
Gm33784 X 9480573 to 9484526 3953 + lncRNA gene predicted gene, 33784
Tssr160525 X 9490380 to 9490383 3 + TSS region transcription start site region 160525
Tssr162968 X 9516298 to 9516300 2 - TSS region transcription start site region 162968
DXMit124b X 9516981 to 9517149 168 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 124b
Gm25728 X 9532511 to 9532669 158 - snRNA gene predicted gene, 25728