Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:8347376-9437423

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssxb9 X 8366978 to 8375388 8410 + protein coding gene synovial sarcoma, X member B9
Ssxb1 X 8413305 to 8422157 8852 + protein coding gene synovial sarcoma, X member B1
Ssxb2 X 8454345 to 8461726 7381 - protein coding gene synovial sarcoma, X member B2
Gm14459 X 8514052 to 8524954 10902 - protein coding gene predicted gene 14459
Ssxb6 X 8542608 to 8548255 5647 - protein coding gene synovial sarcoma, X member B6
Ssxb3 X 8583404 to 8591810 8406 - protein coding gene synovial sarcoma, X member B3
Gm14500 X 8604420 to 8604532 112 + pseudogene predicted gene 14500
Gm6797 X 8639622 to 8645273 5651 + pseudogene predicted pseudogene 6797
Gm6798 X 8654466 to 8654825 359 + pseudogene predicted gene 6798
Gm9430 X 8662302 to 8663828 1526 - pseudogene predicted gene 9430
Ssxb8 X 8684887 to 8690844 5957 - protein coding gene synovial sarcoma, X member B8
Ssx9 X 8748432 to 8754587 6155 + protein coding gene synovial sarcoma, X 9
Ssxb5 X 8803691 to 8809386 5695 + protein coding gene synovial sarcoma, X member B5
Gm14502 X 8830322 to 8830434 112 - pseudogene predicted gene 14502
Gm6592 X 8843994 to 8849607 5613 + protein coding gene predicted gene 6592
Gm5751 X 8871568 to 8875407 3839 + protein coding gene predicted gene 5751
Tssr160504 X 8892354 to 8892372 18 + TSS region transcription start site region 160504
Tssr160505 X 8892376 to 8892423 47 + TSS region transcription start site region 160505
Cpgi22597 X 8892378 to 8893857 1479 CpG island CpG island 22597
B630019K06Rik X 8892382 to 8894964 2582 + protein coding gene RIKEN cDNA B630019K06 gene
Tssr160506 X 8892443 to 8892454 11 + TSS region transcription start site region 160506
Tssr162869 X 8892912 to 8892930 18 - TSS region transcription start site region 162869
Tssr162870 X 8892938 to 8892956 18 - TSS region transcription start site region 162870
Tssr160507 X 8893021 to 8893077 56 + TSS region transcription start site region 160507
DXMit161 X 8898732 to 8898852 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 161
Gm14504 X 8922487 to 8923983 1496 - pseudogene predicted gene 14504
Gm5752 X 8941590 to 8942183 593 - pseudogene predicted gene 5752
Gm16479 X 8956857 to 8957458 601 + pseudogene predicted gene 16479
Gm14510 X 8959312 to 8960403 1091 + pseudogene predicted gene 14510
Fthl17b X 8962134 to 8962975 841 - protein coding gene ferritin, heavy polypeptide-like 17, member B
Gm14509 X 8971505 to 8972790 1285 + pseudogene predicted gene 14509
Fthl17c X 8975718 to 8976559 841 - protein coding gene ferritin, heavy polypeptide-like 17, member C
Gm14457 X 8981822 to 8982982 1160 + pseudogene predicted gene 14457
Fthl17d X 8985940 to 8986672 732 - protein coding gene ferritin, heavy polypeptide-like 17, member D
Gm19775 X 8989425 to 8990166 741 - pseudogene predicted gene, 19775
Gm9431 X 9009027 to 9010077 1050 - pseudogene predicted gene 9431
Gm14865 X 9030084 to 9030744 660 + pseudogene predicted gene 14865
Fthl17e X 9033493 to 9034333 840 + protein coding gene ferritin, heavy polypeptide-like 17, member E
Gm14503 X 9037157 to 9038320 1163 - pseudogene predicted gene 14503
Fthl17-ps1 X 9043727 to 9044242 515 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 1
Gm14864 X 9046087 to 9047173 1086 - pseudogene predicted gene 14864
Gm5379 X 9049287 to 9050112 825 - pseudogene predicted gene 5379
Fthl17f X 9063090 to 9063822 732 + protein coding gene ferritin, heavy polypeptide-like 17, member F
Gm16480 X 9066035 to 9066866 831 - pseudogene predicted gene 16480
Fthl17-ps2 X 9080044 to 9080571 527 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 2
4930402K13Rik X 9104562 to 9106342 1780 + protein coding gene RIKEN cDNA 4930402K13 gene
Tssr160508 X 9104610 to 9104617 7 + TSS region transcription start site region 160508
Tssr160509 X 9115989 to 9116022 33 + TSS region transcription start site region 160509
Fthl17-ps3 X 9123467 to 9123979 512 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 3
Cpgi22598 X 9199738 to 9200946 1208 CpG island CpG island 22598
Tssr160510 X 9199865 to 9199907 42 + TSS region transcription start site region 160510
Tssr160511 X 9199964 to 9200000 36 + TSS region transcription start site region 160511
Lancl3 X 9199973 to 9268085 68112 + protein coding gene LanC lantibiotic synthetase component C-like 3 (bacterial)
Tssr160512 X 9200024 to 9200039 15 + TSS region transcription start site region 160512
Gm14862 X 9250928 to 9256899 5971 - protein coding gene predicted gene 14862
Tssr162871 X 9256900 to 9256917 17 - TSS region transcription start site region 162871
Tssr162872 X 9256926 to 9256937 11 - TSS region transcription start site region 162872
Tssr160513 X 9270250 to 9270252 2 + TSS region transcription start site region 160513
Cpgi22599 X 9272415 to 9273398 983 CpG island CpG island 22599
Tssr160514 X 9272671 to 9272693 22 + TSS region transcription start site region 160514
Tssr160515 X 9272760 to 9272805 45 + TSS region transcription start site region 160515
Xk X 9272784 to 9313245 40461 + protein coding gene X-linked Kx blood group
Tssr160516 X 9272808 to 9272854 46 + TSS region transcription start site region 160516
H2al1m X 9283764 to 9284288 524 + protein coding gene H2A histone family member L1M
DXMit136 X 9300420 to 9300605 185 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 136
Gm25481 X 9317819 to 9317976 157 + snRNA gene predicted gene, 25481
Gm6829 X 9327749 to 9328108 359 - pseudogene predicted pseudogene 6829
Gm4055 X 9328974 to 9332606 3632 protein coding gene predicted gene 4055
Pbwg10 X 9335756 to 9335934 178 QTL postnatal body weight growth 10
DXMit124a X 9335756 to 9335934 178 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 124a
Gm14863 X 9344026 to 9344332 306 + pseudogene predicted gene 14863
H2al1k X 9350627 to 9351136 509 + protein coding gene H2A histone family member L1K
Cybb X 9435252 to 9487766 52514 - protein coding gene cytochrome b-245, beta polypeptide
Tssr160517 X 9435493 to 9435499 6 + TSS region transcription start site region 160517
Tssr162873 X 9435609 to 9435648 39 - TSS region transcription start site region 162873
Tssr162874 X 9435884 to 9435904 20 - TSS region transcription start site region 162874
Tssr162875 X 9435910 to 9435927 17 - TSS region transcription start site region 162875
Tssr160518 X 9435952 to 9436001 49 + TSS region transcription start site region 160518
Tssr162876 X 9436066 to 9436083 17 - TSS region transcription start site region 162876
Tssr162877 X 9436087 to 9436102 15 - TSS region transcription start site region 162877
Tssr162878 X 9436139 to 9436154 15 - TSS region transcription start site region 162878
Tssr162879 X 9436248 to 9436260 12 - TSS region transcription start site region 162879
Tssr162880 X 9436314 to 9436346 32 - TSS region transcription start site region 162880
Tssr162881 X 9436350 to 9436364 14 - TSS region transcription start site region 162881
Tssr160519 X 9436630 to 9436645 15 + TSS region transcription start site region 160519
Tssr160520 X 9436654 to 9436709 55 + TSS region transcription start site region 160520
Tssr162882 X 9436661 to 9436664 3 - TSS region transcription start site region 162882
Tssr160521 X 9436741 to 9436763 22 + TSS region transcription start site region 160521
Tssr160522 X 9436872 to 9436880 8 + TSS region transcription start site region 160522
Tssr162883 X 9437041 to 9437054 13 - TSS region transcription start site region 162883
Tssr162884 X 9437083 to 9437119 36 - TSS region transcription start site region 162884
Tssr162885 X 9437127 to 9437155 28 - TSS region transcription start site region 162885
Tssr162886 X 9437174 to 9437175 1 - TSS region transcription start site region 162886
Tssr162887 X 9437201 to 9437213 12 - TSS region transcription start site region 162887
Tssr162888 X 9437254 to 9437267 13 - TSS region transcription start site region 162888
Tssr162889 X 9437284 to 9437285 1 - TSS region transcription start site region 162889
Tssr162890 X 9437344 to 9437355 11 - TSS region transcription start site region 162890
Tssr162891 X 9437378 to 9437383 5 - TSS region transcription start site region 162891