Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:83080402-87080414

Filter by:
117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dmd X 82948870 to 85206141 2257271 + protein coding gene dystrophin, muscular dystrophy
Tssr161409 X 83082410 to 83082416 6 + TSS region transcription start site region 161409
Tssr161410 X 83087799 to 83087800 1 + TSS region transcription start site region 161410
Tssr161411 X 83116795 to 83116806 11 + TSS region transcription start site region 161411
Tssr161412 X 83222543 to 83222547 4 + TSS region transcription start site region 161412
n-R5s9 X 83345743 to 83345859 116 + rRNA gene nuclear encoded rRNA 5S 9
Tssr161413 X 83376351 to 83376353 2 + TSS region transcription start site region 161413
Tsga8 X 83486678 to 83487924 1246 - protein coding gene testis specific gene A8
Tssr163729 X 83487780 to 83487791 11 - TSS region transcription start site region 163729
Gm22580 X 83536031 to 83536137 106 + snRNA gene predicted gene, 22580
Tssr161414 X 83583003 to 83583015 12 + TSS region transcription start site region 161414
Tssr161415 X 83588483 to 83588498 15 + TSS region transcription start site region 161415
Tssr5643 X 83589621 to 83589627 6 + TSS region transcription start site region 5643
Tssr161416 X 83591937 to 83591943 6 + TSS region transcription start site region 161416
Tssr161417 X 83592131 to 83592137 6 + TSS region transcription start site region 161417
Tssr161418 X 83593891 to 83593896 5 + TSS region transcription start site region 161418
Tssr163730 X 83772601 to 83772618 17 - TSS region transcription start site region 163730
Tssr5644 X 83779841 to 83779848 7 + TSS region transcription start site region 5644
Gm18847 X 83795293 to 83796194 901 - pseudogene predicted gene, 18847
Tssr161419 X 83855367 to 83855370 3 + TSS region transcription start site region 161419
Tssr161420 X 83855382 to 83855399 17 + TSS region transcription start site region 161420
Gm46696 X 83872971 to 83879616 6645 - pseudogene predicted gene, 46696
Gm19042 X 84018144 to 84018897 753 - pseudogene predicted gene, 19042
Gm14769 X 84063333 to 84063764 431 + pseudogene predicted gene 14769
Tssr161421 X 84076588 to 84076607 19 + TSS region transcription start site region 161421
Tssr161422 X 84076617 to 84076653 36 + TSS region transcription start site region 161422
Tssr161423 X 84109302 to 84109306 4 + TSS region transcription start site region 161423
Tssr161424 X 84772701 to 84772719 18 + TSS region transcription start site region 161424
Tssr161425 X 84772723 to 84772730 7 + TSS region transcription start site region 161425
Tssr5645 X 84772744 to 84772747 3 + TSS region transcription start site region 5645
Tssr161426 X 84772762 to 84772770 8 + TSS region transcription start site region 161426
Tssr161427 X 84772800 to 84772810 10 + TSS region transcription start site region 161427
Tssr161428 X 84772812 to 84772830 18 + TSS region transcription start site region 161428
Gm14770 X 84879887 to 84880198 311 + pseudogene predicted gene 14770
DXMit242 X 84889011 to 84889158 147 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-242
Tssr161429 X 85048284 to 85048307 23 + TSS region transcription start site region 161429
Tssr161430 X 85048309 to 85048333 24 + TSS region transcription start site region 161430
Tssr163731 X 85080402 to 85080414 12 - TSS region transcription start site region 163731
Tssr5646 X 85188345 to 85188348 3 + TSS region transcription start site region 5646
Tssr161431 X 85202619 to 85202631 12 + TSS region transcription start site region 161431
Tssr161432 X 85202668 to 85202685 17 + TSS region transcription start site region 161432
Tssr161433 X 85202732 to 85202752 20 + TSS region transcription start site region 161433
DXMit8 X 85202920 to 85203164 244 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 8
DXMit8.3 X 85203027 to 85203188 161 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 8.3
Gm14771 X 85236364 to 85236566 202 - pseudogene predicted gene 14771
Gm16463 X 85241617 to 85242731 1114 + pseudogene predicted gene 16463
Tssr161434 X 85249674 to 85249684 10 + TSS region transcription start site region 161434
Fthl17a X 85249679 to 85270288 20609 + protein coding gene ferritin, heavy polypeptide-like 17, member A
Tssr161435 X 85249709 to 85249718 9 + TSS region transcription start site region 161435
Tssr161436 X 85269489 to 85269504 15 + TSS region transcription start site region 161436
Tssr161437 X 85269507 to 85269560 53 + TSS region transcription start site region 161437
Tssr161438 X 85269563 to 85269580 17 + TSS region transcription start site region 161438
Gm14765 X 85431827 to 85432152 325 + pseudogene predicted gene 14765
DXMit195 X 85553610 to 85553700 90 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 195
Cpgi22816 X 85573659 to 85574563 904 CpG island CpG island 22816
Tssr161439 X 85573983 to 85574017 34 + TSS region transcription start site region 161439
Tssr161440 X 85574018 to 85574039 21 + TSS region transcription start site region 161440
Tab3 X 85574022 to 85634469 60447 + protein coding gene TGF-beta activated kinase 1/MAP3K7 binding protein 3
Gm44378 X 85588977 to 85589059 82 + miRNA gene predicted gene, 44378
Gm39523 X 85609354 to 85614228 4874 - lncRNA gene predicted gene, 39523
Tssr161441 X 85614609 to 85614626 17 + TSS region transcription start site region 161441
Tssr163732 X 85700357 to 85700363 6 - TSS region transcription start site region 163732
Gk X 85701937 to 85776819 74882 - protein coding gene glycerol kinase
Gm14767 X 85716438 to 85717023 585 + pseudogene predicted gene 14767
Tssr161442 X 85716540 to 85716551 11 + TSS region transcription start site region 161442
E130114A11Rik X 85733875 to 85736831 2956 unclassified gene RIKEN cDNA E130114A11 gene
Tssr163733 X 85738707 to 85738744 37 - TSS region transcription start site region 163733
Gm14764 X 85744348 to 85749764 5416 + antisense lncRNA gene predicted gene 14764
Tssr163734 X 85775619 to 85775622 3 - TSS region transcription start site region 163734
Cpgi22817 X 85776330 to 85777254 924 CpG island CpG island 22817
Tssr163735 X 85776537 to 85776548 11 - TSS region transcription start site region 163735
Tssr163736 X 85776555 to 85776580 25 - TSS region transcription start site region 163736
Tssr163737 X 85776606 to 85776643 37 - TSS region transcription start site region 163737
Tssr163738 X 85776644 to 85776658 14 - TSS region transcription start site region 163738
Tssr161443 X 85776934 to 85776958 24 + TSS region transcription start site region 161443
Tssr161444 X 85777010 to 85777020 10 + TSS region transcription start site region 161444
Gm14766 X 85790873 to 85791239 366 + pseudogene predicted gene 14766
Gm6964 X 85793684 to 85794120 436 - pseudogene predicted gene 6964
Gm14761 X 85823168 to 85823429 261 + pseudogene predicted gene 14761
Gm14762 X 85825236 to 85827656 2420 + lincRNA gene predicted gene 14762
Tssr161445 X 85870221 to 85870251 30 + TSS region transcription start site region 161445
Tssr161446 X 85870266 to 85870297 31 + TSS region transcription start site region 161446
Tssr161447 X 85870324 to 85870335 11 + TSS region transcription start site region 161447
5430427O19Rik X 85870354 to 85891499 21145 + protein coding gene RIKEN cDNA 5430427O19 gene
Tssr161448 X 85870378 to 85870389 11 + TSS region transcription start site region 161448
Tssr161449 X 85870705 to 85870713 8 + TSS region transcription start site region 161449
Tssr161450 X 85871723 to 85871728 5 + TSS region transcription start site region 161450
Tssr163739 X 85886761 to 85886775 14 - TSS region transcription start site region 163739
Gm14772 X 86032656 to 86033169 513 - pseudogene predicted gene 14772
Tssr161451 X 86044186 to 86044203 17 + TSS region transcription start site region 161451
Samt3 X 86044199 to 86047313 3114 + protein coding gene spermatogenesis associated multipass transmembrane protein 3
Tssr161452 X 86044204 to 86044214 10 + TSS region transcription start site region 161452
Cpgi22818 X 86191686 to 86192760 1074 CpG island CpG island 22818
Tssr161453 X 86191731 to 86191739 8 + TSS region transcription start site region 161453
Tssr161454 X 86191766 to 86191782 16 + TSS region transcription start site region 161454
Nr0b1 X 86191775 to 86195947 4172 + protein coding gene nuclear receptor subfamily 0, group B, member 1
Mageb4 X 86250256 to 86256219 5963 - protein coding gene melanoma antigen, family B, 4
Gm19043 X 86265577 to 86267013 1436 + pseudogene predicted gene, 19043
Gm8839 X 86270712 to 86272356 1644 + pseudogene predicted gene 8839
Mageb10-ps X 86299922 to 86301328 1406 - pseudogene melanoma antigen, family B, 10, pseudogene
Gm19044 X 86311145 to 86312756 1611 + pseudogene predicted gene, 19044
Gm8844 X 86316083 to 86318696 2613 + pseudogene predicted gene 8844
Mageb8-ps X 86327943 to 86328935 992 - pseudogene melanoma antigen, family B, 8, pseudogene
Gm41 X 86344823 to 86345845 1022 - pseudogene predicted pseudogene 41
Tssr163740 X 86354948 to 86354991 43 - TSS region transcription start site region 163740
Mageb6-ps X 86370799 to 86371830 1031 - pseudogene melanoma antigen, family B, 6, pseudogene
Gm18438 X 86387940 to 86388532 592 - pseudogene predicted gene, 18438
Mageb7-ps X 86398203 to 86399243 1040 - pseudogene melanoma antigen, family B, 7, pseudogene
Tssr163741 X 86401054 to 86401064 10 - TSS region transcription start site region 163741
n-R5s10 X 86406128 to 86406246 118 - rRNA gene nuclear encoded rRNA 5S 10
Gm39524 X 86713268 to 86722630 9362 - lncRNA gene predicted gene, 39524
Tssr163742 X 86746564 to 86746566 2 - TSS region transcription start site region 163742
Il1rapl1 X 86747242 to 88115623 1368381 - protein coding gene interleukin 1 receptor accessory protein-like 1
Tssr161455 X 86770468 to 86770475 7 + TSS region transcription start site region 161455
Gm14775 X 86792474 to 86792783 309 + pseudogene predicted gene 14775
Tssr163743 X 86997672 to 86997676 4 - TSS region transcription start site region 163743
DXMit93 X 87069402 to 87069601 199 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 93