Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:8249420-8959532

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ftsj1 X 8238668 to 8252406 13738 - protein coding gene FtsJ RNA methyltransferase homolog 1 (E. coli)
Cpgi22596 X 8252271 to 8252470 199 CpG island CpG island 22596
Tssr162867 X 8252304 to 8252333 29 - TSS region transcription start site region 162867
Tssr162868 X 8252334 to 8252400 66 - TSS region transcription start site region 162868
Tssr160491 X 8252758 to 8252793 35 + TSS region transcription start site region 160491
Tssr160492 X 8271168 to 8271179 11 + TSS region transcription start site region 160492
Slc38a5 X 8271381 to 8280179 8798 + protein coding gene solute carrier family 38, member 5
Tssr160493 X 8271385 to 8271453 68 + TSS region transcription start site region 160493
Tssr160494 X 8271473 to 8271484 11 + TSS region transcription start site region 160494
Tssr160495 X 8271568 to 8271578 10 + TSS region transcription start site region 160495
Tssr160496 X 8271680 to 8271790 110 + TSS region transcription start site region 160496
Tssr160497 X 8272219 to 8272230 11 + TSS region transcription start site region 160497
Tssr160498 X 8272244 to 8272264 20 + TSS region transcription start site region 160498
Tssr160499 X 8272273 to 8272304 31 + TSS region transcription start site region 160499
Tssr160500 X 8276132 to 8276144 12 + TSS region transcription start site region 160500
Tssr160501 X 8276578 to 8276604 26 + TSS region transcription start site region 160501
Tssr160502 X 8276771 to 8276779 8 + TSS region transcription start site region 160502
Tssr160503 X 8277680 to 8277700 20 + TSS region transcription start site region 160503
Ssxb10 X 8327424 to 8336235 8811 + protein coding gene synovial sarcoma, X member B10
Ssxb9 X 8366978 to 8375388 8410 + protein coding gene synovial sarcoma, X member B9
Ssxb1 X 8413305 to 8422157 8852 + protein coding gene synovial sarcoma, X member B1
Ssxb2 X 8454345 to 8461726 7381 - protein coding gene synovial sarcoma, X member B2
Gm14459 X 8514052 to 8524954 10902 - protein coding gene predicted gene 14459
Ssxb6 X 8542608 to 8548255 5647 - protein coding gene synovial sarcoma, X member B6
Ssxb3 X 8583404 to 8591810 8406 - protein coding gene synovial sarcoma, X member B3
Gm14500 X 8604420 to 8604532 112 + pseudogene predicted gene 14500
Gm6797 X 8639622 to 8645273 5651 + pseudogene predicted pseudogene 6797
Gm6798 X 8654466 to 8654825 359 + pseudogene predicted gene 6798
Gm9430 X 8662302 to 8663828 1526 - pseudogene predicted gene 9430
Ssxb8 X 8684887 to 8690844 5957 - protein coding gene synovial sarcoma, X member B8
Ssx9 X 8748432 to 8754587 6155 + protein coding gene synovial sarcoma, X 9
Ssxb5 X 8803691 to 8809386 5695 + protein coding gene synovial sarcoma, X member B5
Gm14502 X 8830322 to 8830434 112 - pseudogene predicted gene 14502
Gm6592 X 8843994 to 8849607 5613 + protein coding gene predicted gene 6592
Gm5751 X 8871568 to 8875407 3839 + protein coding gene predicted gene 5751
Tssr160504 X 8892354 to 8892372 18 + TSS region transcription start site region 160504
Tssr160505 X 8892376 to 8892423 47 + TSS region transcription start site region 160505
Cpgi22597 X 8892378 to 8893857 1479 CpG island CpG island 22597
B630019K06Rik X 8892382 to 8894964 2582 + protein coding gene RIKEN cDNA B630019K06 gene
Tssr160506 X 8892443 to 8892454 11 + TSS region transcription start site region 160506
Tssr162869 X 8892912 to 8892930 18 - TSS region transcription start site region 162869
Tssr162870 X 8892938 to 8892956 18 - TSS region transcription start site region 162870
Tssr160507 X 8893021 to 8893077 56 + TSS region transcription start site region 160507
DXMit161 X 8898732 to 8898852 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 161
Gm14504 X 8922487 to 8923983 1496 - pseudogene predicted gene 14504
Gm5752 X 8941590 to 8942183 593 - pseudogene predicted gene 5752
Gm16479 X 8956857 to 8957458 601 + pseudogene predicted gene 16479
Gm14510 X 8959312 to 8960403 1091 + pseudogene predicted gene 14510