Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:8134420-9074532

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbm3 X 8138975 to 8145880 6905 - protein coding gene RNA binding motif (RNP1, RRM) protein 3
Cpgi22592 X 8145238 to 8145854 616 CpG island CpG island 22592
Tssr5587 X 8145244 to 8145286 42 - TSS region transcription start site region 5587
Rbm3os X 8145429 to 8147964 2535 + antisense lncRNA gene RNA binding motif protein 3, opposite strand
Tssr162857 X 8145696 to 8145707 11 - TSS region transcription start site region 162857
Tssr162858 X 8145713 to 8145731 18 - TSS region transcription start site region 162858
Tbc1d25 X 8154472 to 8176181 21709 - protein coding gene TBC1 domain family, member 25
Cpgi22593 X 8175412 to 8176113 701 CpG island CpG island 22593
Tssr162859 X 8175890 to 8175956 66 - TSS region transcription start site region 162859
Ebp X 8185329 to 8193512 8183 - protein coding gene phenylalkylamine Ca2+ antagonist (emopamil) binding protein
Tssr162860 X 8190235 to 8190257 22 - TSS region transcription start site region 162860
Cpgi22594 X 8192616 to 8192990 374 CpG island CpG island 22594
Tssr162861 X 8192828 to 8192881 53 - TSS region transcription start site region 162861
Tssr162862 X 8192892 to 8192908 16 - TSS region transcription start site region 162862
Tssr162863 X 8193360 to 8193385 25 - TSS region transcription start site region 162863
Tssr162864 X 8193387 to 8193397 10 - TSS region transcription start site region 162864
Porcn X 8193848 to 8206525 12677 - protein coding gene porcupine O-acyltransferase
Tssr162865 X 8203184 to 8203213 29 - TSS region transcription start site region 162865
Gm33135 X 8205707 to 8217912 12205 + lncRNA gene predicted gene, 33135
Cpgi22595 X 8206088 to 8206741 653 CpG island CpG island 22595
Tssr162866 X 8206475 to 8206547 72 - TSS region transcription start site region 162866
Ftsj1 X 8238668 to 8252406 13738 - protein coding gene FtsJ RNA methyltransferase homolog 1 (E. coli)
DXImx6 X 8244432 to 8244721 289 DNA segment DNA segment, Chr X, Immunex 6
Cpgi22596 X 8252271 to 8252470 199 CpG island CpG island 22596
Tssr162867 X 8252304 to 8252333 29 - TSS region transcription start site region 162867
Tssr162868 X 8252334 to 8252400 66 - TSS region transcription start site region 162868
Tssr160491 X 8252758 to 8252793 35 + TSS region transcription start site region 160491
Tssr160492 X 8271168 to 8271179 11 + TSS region transcription start site region 160492
Slc38a5 X 8271381 to 8280179 8798 + protein coding gene solute carrier family 38, member 5
Tssr160493 X 8271385 to 8271453 68 + TSS region transcription start site region 160493
Tssr160494 X 8271473 to 8271484 11 + TSS region transcription start site region 160494
Tssr160495 X 8271568 to 8271578 10 + TSS region transcription start site region 160495
Tssr160496 X 8271680 to 8271790 110 + TSS region transcription start site region 160496
Tssr160497 X 8272219 to 8272230 11 + TSS region transcription start site region 160497
Tssr160498 X 8272244 to 8272264 20 + TSS region transcription start site region 160498
Tssr160499 X 8272273 to 8272304 31 + TSS region transcription start site region 160499
Tssr160500 X 8276132 to 8276144 12 + TSS region transcription start site region 160500
Tssr160501 X 8276578 to 8276604 26 + TSS region transcription start site region 160501
Tssr160502 X 8276771 to 8276779 8 + TSS region transcription start site region 160502
Tssr160503 X 8277680 to 8277700 20 + TSS region transcription start site region 160503
Ssxb10 X 8327424 to 8336235 8811 + protein coding gene synovial sarcoma, X member B10
Ssxb9 X 8366978 to 8375388 8410 + protein coding gene synovial sarcoma, X member B9
Ssxb1 X 8413305 to 8422157 8852 + protein coding gene synovial sarcoma, X member B1
Ssxb2 X 8454345 to 8461726 7381 - protein coding gene synovial sarcoma, X member B2
Gm14459 X 8514052 to 8524954 10902 - protein coding gene predicted gene 14459
Ssxb6 X 8542608 to 8548255 5647 - protein coding gene synovial sarcoma, X member B6
Ssxb3 X 8583404 to 8591810 8406 - protein coding gene synovial sarcoma, X member B3
Gm14500 X 8604420 to 8604532 112 + pseudogene predicted gene 14500
Gm6797 X 8639622 to 8645273 5651 + pseudogene predicted pseudogene 6797
Gm6798 X 8654466 to 8654825 359 + pseudogene predicted gene 6798
Gm9430 X 8662302 to 8663828 1526 - pseudogene predicted gene 9430
Ssxb8 X 8684887 to 8690844 5957 - protein coding gene synovial sarcoma, X member B8
Ssx9 X 8748432 to 8754587 6155 + protein coding gene synovial sarcoma, X 9
Ssxb5 X 8803691 to 8809386 5695 + protein coding gene synovial sarcoma, X member B5
Gm14502 X 8830322 to 8830434 112 - pseudogene predicted gene 14502
Gm6592 X 8843994 to 8849607 5613 + protein coding gene predicted gene 6592
Gm5751 X 8871568 to 8875407 3839 + protein coding gene predicted gene 5751
Tssr160504 X 8892354 to 8892372 18 + TSS region transcription start site region 160504
Tssr160505 X 8892376 to 8892423 47 + TSS region transcription start site region 160505
Cpgi22597 X 8892378 to 8893857 1479 CpG island CpG island 22597
B630019K06Rik X 8892382 to 8894964 2582 + protein coding gene RIKEN cDNA B630019K06 gene
Tssr160506 X 8892443 to 8892454 11 + TSS region transcription start site region 160506
Tssr162869 X 8892912 to 8892930 18 - TSS region transcription start site region 162869
Tssr162870 X 8892938 to 8892956 18 - TSS region transcription start site region 162870
Tssr160507 X 8893021 to 8893077 56 + TSS region transcription start site region 160507
DXMit161 X 8898732 to 8898852 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 161
Gm14504 X 8922487 to 8923983 1496 - pseudogene predicted gene 14504
Gm5752 X 8941590 to 8942183 593 - pseudogene predicted gene 5752
Gm16479 X 8956857 to 8957458 601 + pseudogene predicted gene 16479
Gm14510 X 8959312 to 8960403 1091 + pseudogene predicted gene 14510
Fthl17b X 8962134 to 8962975 841 - protein coding gene ferritin, heavy polypeptide-like 17, member B
Gm14509 X 8971505 to 8972790 1285 + pseudogene predicted gene 14509
Fthl17c X 8975718 to 8976559 841 - protein coding gene ferritin, heavy polypeptide-like 17, member C
Gm14457 X 8981822 to 8982982 1160 + pseudogene predicted gene 14457
Fthl17d X 8985940 to 8986672 732 - protein coding gene ferritin, heavy polypeptide-like 17, member D
Gm19775 X 8989425 to 8990166 741 - pseudogene predicted gene, 19775
Gm9431 X 9009027 to 9010077 1050 - pseudogene predicted gene 9431
Gm14865 X 9030084 to 9030744 660 + pseudogene predicted gene 14865
Fthl17e X 9033493 to 9034333 840 + protein coding gene ferritin, heavy polypeptide-like 17, member E
Gm14503 X 9037157 to 9038320 1163 - pseudogene predicted gene 14503
Fthl17-ps1 X 9043727 to 9044242 515 + pseudogene ferritin, heavy polypeptide-like 17, pseudogene 1
Gm14864 X 9046087 to 9047173 1086 - pseudogene predicted gene 14864
Gm5379 X 9049287 to 9050112 825 - pseudogene predicted gene 5379
Fthl17f X 9063090 to 9063822 732 + protein coding gene ferritin, heavy polypeptide-like 17, member F
Gm16480 X 9066035 to 9066866 831 - pseudogene predicted gene 16480