Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:7947616-8437990

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdac6 X 7930120 to 7947889 17769 - protein coding gene histone deacetylase 6
Cpgi22588 X 7947591 to 7948424 833 CpG island CpG island 22588
Tssr162826 X 7947664 to 7947674 10 - TSS region transcription start site region 162826
Tssr162827 X 7947743 to 7947751 8 - TSS region transcription start site region 162827
Tssr162828 X 7947763 to 7947776 13 - TSS region transcription start site region 162828
Tssr162829 X 7947779 to 7947815 36 - TSS region transcription start site region 162829
Tssr162830 X 7947819 to 7947832 13 - TSS region transcription start site region 162830
Tssr162831 X 7947848 to 7947857 9 - TSS region transcription start site region 162831
Gm39488 X 7948101 to 8033483 85382 + lncRNA gene predicted gene, 39488
Psmb6-ps X 7950156 to 7950868 712 - pseudogene proteasome (prosome, macropain) subunit, beta type 6, pseudogene
Gata1 X 7959260 to 7976682 17422 - protein coding gene GATA binding protein 1
Tssr162832 X 7964166 to 7964191 25 - TSS region transcription start site region 162832
Tssr160483 X 7966340 to 7966366 26 + TSS region transcription start site region 160483
Tssr162833 X 7967802 to 7967812 10 - TSS region transcription start site region 162833
Tssr162834 X 7967817 to 7967875 58 - TSS region transcription start site region 162834
Tssr162835 X 7976544 to 7976562 18 - TSS region transcription start site region 162835
Tssr162836 X 7976588 to 7976607 19 - TSS region transcription start site region 162836
Tssr162837 X 7977968 to 7977975 7 - TSS region transcription start site region 162837
Tssr162838 X 7978027 to 7978040 13 - TSS region transcription start site region 162838
Glod5 X 8004201 to 8018492 14291 - protein coding gene glyoxalase domain containing 5
Tssr162839 X 8005932 to 8005949 17 - TSS region transcription start site region 162839
Tssr162840 X 8005956 to 8005981 25 - TSS region transcription start site region 162840
Tssr162841 X 8015568 to 8015581 13 - TSS region transcription start site region 162841
Tssr162842 X 8015811 to 8015839 28 - TSS region transcription start site region 162842
Tssr162843 X 8018449 to 8018490 41 - TSS region transcription start site region 162843
Tssr162844 X 8018493 to 8018502 9 - TSS region transcription start site region 162844
Gm9429 X 8034212 to 8035079 867 + pseudogene predicted gene 9429
Rpl22-ps1 X 8038611 to 8038996 385 - pseudogene ribosomal protein L22, pseudogene 1
Tssr162845 X 8039005 to 8039019 14 - TSS region transcription start site region 162845
Gm14799 X 8042465 to 8042893 428 - pseudogene predicted gene 14799
Gm14820 X 8042943 to 8074619 31676 + antisense lncRNA gene predicted gene 14820
Tssr160484 X 8046591 to 8046593 2 + TSS region transcription start site region 160484
Tssr160485 X 8047188 to 8047205 17 + TSS region transcription start site region 160485
Gm7079 X 8047229 to 8047399 170 + pseudogene predicted pseudogene 7079
Tssr160486 X 8049229 to 8049241 12 + TSS region transcription start site region 160486
Tssr160487 X 8050742 to 8050787 45 + TSS region transcription start site region 160487
Tssr160488 X 8051582 to 8051603 21 + TSS region transcription start site region 160488
Suv39h1 X 8061171 to 8074760 13589 - protein coding gene suppressor of variegation 3-9 1
Cpgi22589 X 8073869 to 8074847 978 CpG island CpG island 22589
Tssr162846 X 8074570 to 8074626 56 - TSS region transcription start site region 162846
Tssr162847 X 8074720 to 8074736 16 - TSS region transcription start site region 162847
Was X 8081466 to 8090491 9025 - protein coding gene Wiskott-Aldrich syndrome
Gm22083 X 8083992 to 8084093 101 + snRNA gene predicted gene, 22083
Tssr162848 X 8090435 to 8090439 4 - TSS region transcription start site region 162848
Tssr162849 X 8090442 to 8090494 52 - TSS region transcription start site region 162849
Cpgi22590 X 8096583 to 8096858 275 CpG island CpG island 22590
Gm6787 X 8097087 to 8106701 9614 + unclassified non-coding RNA gene predicted gene 6787
Psmb7-ps2 X 8105294 to 8106113 819 + pseudogene proteasome (prosome, macropain) subunit, beta type 7, pseudogene 2
Wdr13 X 8123301 to 8132858 9557 - protein coding gene WD repeat domain 13
Tssr162850 X 8131703 to 8131722 19 - TSS region transcription start site region 162850
Tssr162851 X 8131724 to 8131727 3 - TSS region transcription start site region 162851
Tssr160489 X 8131849 to 8131854 5 + TSS region transcription start site region 160489
Tssr160490 X 8132179 to 8132233 54 + TSS region transcription start site region 160490
Cpgi22591 X 8132237 to 8132585 348 CpG island CpG island 22591
Tssr162852 X 8132397 to 8132424 27 - TSS region transcription start site region 162852
Tssr162853 X 8132481 to 8132492 11 - TSS region transcription start site region 162853
Tssr162854 X 8132512 to 8132581 69 - TSS region transcription start site region 162854
Tssr162855 X 8132793 to 8132857 64 - TSS region transcription start site region 162855
Tssr162856 X 8132891 to 8132898 7 - TSS region transcription start site region 162856
Rbm3 X 8138975 to 8145880 6905 - protein coding gene RNA binding motif (RNP1, RRM) protein 3
Cpgi22592 X 8145238 to 8145854 616 CpG island CpG island 22592
Tssr5587 X 8145244 to 8145286 42 - TSS region transcription start site region 5587
Rbm3os X 8145429 to 8147964 2535 + antisense lncRNA gene RNA binding motif protein 3, opposite strand
Tssr162857 X 8145696 to 8145707 11 - TSS region transcription start site region 162857
Tssr162858 X 8145713 to 8145731 18 - TSS region transcription start site region 162858
Tbc1d25 X 8154472 to 8176181 21709 - protein coding gene TBC1 domain family, member 25
Cpgi22593 X 8175412 to 8176113 701 CpG island CpG island 22593
Tssr162859 X 8175890 to 8175956 66 - TSS region transcription start site region 162859
Ebp X 8185329 to 8193512 8183 - protein coding gene phenylalkylamine Ca2+ antagonist (emopamil) binding protein
Tssr162860 X 8190235 to 8190257 22 - TSS region transcription start site region 162860
Cpgi22594 X 8192616 to 8192990 374 CpG island CpG island 22594
Tssr162861 X 8192828 to 8192881 53 - TSS region transcription start site region 162861
Tssr162862 X 8192892 to 8192908 16 - TSS region transcription start site region 162862
Tssr162863 X 8193360 to 8193385 25 - TSS region transcription start site region 162863
Tssr162864 X 8193387 to 8193397 10 - TSS region transcription start site region 162864
Porcn X 8193848 to 8206525 12677 - protein coding gene porcupine O-acyltransferase
Tssr162865 X 8203184 to 8203213 29 - TSS region transcription start site region 162865
Gm33135 X 8205707 to 8217912 12205 + lncRNA gene predicted gene, 33135
Cpgi22595 X 8206088 to 8206741 653 CpG island CpG island 22595
Tssr162866 X 8206475 to 8206547 72 - TSS region transcription start site region 162866
Ftsj1 X 8238668 to 8252406 13738 - protein coding gene FtsJ RNA methyltransferase homolog 1 (E. coli)
DXImx6 X 8244432 to 8244721 289 DNA segment DNA segment, Chr X, Immunex 6
Cpgi22596 X 8252271 to 8252470 199 CpG island CpG island 22596
Tssr162867 X 8252304 to 8252333 29 - TSS region transcription start site region 162867
Tssr162868 X 8252334 to 8252400 66 - TSS region transcription start site region 162868
Tssr160491 X 8252758 to 8252793 35 + TSS region transcription start site region 160491
Tssr160492 X 8271168 to 8271179 11 + TSS region transcription start site region 160492
Slc38a5 X 8271381 to 8280179 8798 + protein coding gene solute carrier family 38, member 5
Tssr160493 X 8271385 to 8271453 68 + TSS region transcription start site region 160493
Tssr160494 X 8271473 to 8271484 11 + TSS region transcription start site region 160494
Tssr160495 X 8271568 to 8271578 10 + TSS region transcription start site region 160495
Tssr160496 X 8271680 to 8271790 110 + TSS region transcription start site region 160496
Tssr160497 X 8272219 to 8272230 11 + TSS region transcription start site region 160497
Tssr160498 X 8272244 to 8272264 20 + TSS region transcription start site region 160498
Tssr160499 X 8272273 to 8272304 31 + TSS region transcription start site region 160499
Tssr160500 X 8276132 to 8276144 12 + TSS region transcription start site region 160500
Tssr160501 X 8276578 to 8276604 26 + TSS region transcription start site region 160501
Tssr160502 X 8276771 to 8276779 8 + TSS region transcription start site region 160502
Tssr160503 X 8277680 to 8277700 20 + TSS region transcription start site region 160503
Ssxb10 X 8327424 to 8336235 8811 + protein coding gene synovial sarcoma, X member B10
Ssxb9 X 8366978 to 8375388 8410 + protein coding gene synovial sarcoma, X member B9
Ssxb1 X 8413305 to 8422157 8852 + protein coding gene synovial sarcoma, X member B1