Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:7617414-8227428

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249 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna1f X 7607083 to 7635196 28113 + protein coding gene calcium channel, voltage-dependent, alpha 1F subunit
DXImx28 X 7629020 to 7629322 302 DNA segment DNA segment, Chr X, Immunex 28
Tssr160396 X 7632754 to 7632790 36 + TSS region transcription start site region 160396
Cpgi22570 X 7638528 to 7638950 422 CpG island CpG island 22570
Syp X 7638580 to 7653256 14676 + protein coding gene synaptophysin
Tssr160397 X 7638674 to 7638697 23 + TSS region transcription start site region 160397
Tssr160398 X 7641093 to 7641109 16 + TSS region transcription start site region 160398
Tssr160399 X 7644139 to 7644153 14 + TSS region transcription start site region 160399
Tssr160400 X 7644232 to 7644244 12 + TSS region transcription start site region 160400
Tssr160401 X 7644820 to 7644836 16 + TSS region transcription start site region 160401
DXImx21 X 7645663 to 7645823 160 DNA segment DNA segment, Chr X, Immunex 21
Cpgi22571 X 7648704 to 7648880 176 CpG island CpG island 22571
Tssr160402 X 7648718 to 7648729 11 + TSS region transcription start site region 160402
Gm14703 X 7651106 to 7657258 6152 - antisense lncRNA gene predicted gene 14703
Tssr160403 X 7651882 to 7651901 19 + TSS region transcription start site region 160403
Tssr160404 X 7651982 to 7651996 14 + TSS region transcription start site region 160404
Tssr160405 X 7652467 to 7652486 19 + TSS region transcription start site region 160405
Tssr162805 X 7652802 to 7652811 9 - TSS region transcription start site region 162805
Tssr160406 X 7652815 to 7652829 14 + TSS region transcription start site region 160406
Tssr160407 X 7652927 to 7652944 17 + TSS region transcription start site region 160407
Tssr160408 X 7652965 to 7652981 16 + TSS region transcription start site region 160408
Cpgi22572 X 7657174 to 7657503 329 CpG island CpG island 22572
Tssr160409 X 7657355 to 7657426 71 + TSS region transcription start site region 160409
Prickle3 X 7657379 to 7668186 10807 + protein coding gene prickle planar cell polarity protein 3
Tssr160410 X 7657439 to 7657450 11 + TSS region transcription start site region 160410
DXImx29 X 7659764 to 7659980 216 DNA segment DNA segment, Chr X, Immunex 29
Cpgi22573 X 7665097 to 7665252 155 CpG island CpG island 22573
Plp2 X 7667941 to 7671390 3449 - protein coding gene proteolipid protein 2
Tssr162806 X 7671341 to 7671397 56 - TSS region transcription start site region 162806
Tssr162807 X 7671400 to 7671412 12 - TSS region transcription start site region 162807
Magix X 7673166 to 7681251 8085 - protein coding gene MAGI family member, X-linked
Cpgi22574 X 7679886 to 7680164 278 CpG island CpG island 22574
DXImx1 X 7680609 to 7680863 254 DNA segment DNA segment, Chr X, Immunex 1
Tssr162808 X 7681002 to 7681032 30 - TSS region transcription start site region 162808
Tssr162809 X 7681034 to 7681045 11 - TSS region transcription start site region 162809
Tssr162810 X 7681215 to 7681229 14 - TSS region transcription start site region 162810
Tssr162811 X 7681230 to 7681256 26 - TSS region transcription start site region 162811
DXImx25 X 7685659 to 7685887 228 DNA segment DNA segment, Chr X, Immunex 25
Gm6079 X 7686951 to 7687354 403 + pseudogene predicted gene 6079
DXImx19 X 7687831 to 7687983 152 DNA segment DNA segment, Chr X, Immunex 19
Gpkow X 7697131 to 7710262 13131 + protein coding gene G patch domain and KOW motifs
Tssr160411 X 7697164 to 7697187 23 + TSS region transcription start site region 160411
Cpgi22575 X 7697165 to 7697342 177 CpG island CpG island 22575
Tssr160412 X 7697188 to 7697219 31 + TSS region transcription start site region 160412
Cpgi22576 X 7714266 to 7714457 191 CpG island CpG island 22576
Wdr45 X 7721983 to 7728201 6218 + protein coding gene WD repeat domain 45
Tssr160413 X 7722214 to 7722257 43 + TSS region transcription start site region 160413
Gm45208 X 7722245 to 7730530 8285 + protein coding gene predicted gene 45208
Tssr160414 X 7722267 to 7722287 20 + TSS region transcription start site region 160414
Tssr160415 X 7723049 to 7723061 12 + TSS region transcription start site region 160415
Tssr160416 X 7723278 to 7723282 4 + TSS region transcription start site region 160416
Cpgi22577 X 7728207 to 7728807 600 CpG island CpG island 22577
Tssr160417 X 7728431 to 7728442 11 + TSS region transcription start site region 160417
Tssr160418 X 7728499 to 7728510 11 + TSS region transcription start site region 160418
Tssr160419 X 7728534 to 7728545 11 + TSS region transcription start site region 160419
Tssr160420 X 7728546 to 7728579 33 + TSS region transcription start site region 160420
Praf2 X 7728571 to 7731063 2492 + protein coding gene PRA1 domain family 2
Tssr160421 X 7728583 to 7728588 5 + TSS region transcription start site region 160421
Tssr160422 X 7729873 to 7729896 23 + TSS region transcription start site region 160422
DXImx30 X 7731606 to 7731766 160 DNA segment DNA segment, Chr X, Immunex 30
DXMit247 X 7731611 to 7731700 89 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology-247
Ccdc120 X 7731714 to 7741324 9610 - protein coding gene coiled-coil domain containing 120
DXImx18 X 7735931 to 7736084 153 DNA segment DNA segment, Chr X, Immunex 18
Tssr162812 X 7740206 to 7740218 12 - TSS region transcription start site region 162812
Tssr162813 X 7741288 to 7741321 33 - TSS region transcription start site region 162813
Cpgi22578 X 7750477 to 7751033 556 CpG island CpG island 22578
Tssr162814 X 7750889 to 7750916 27 - TSS region transcription start site region 162814
Smt3h2-ps X 7752130 to 7752414 284 + pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene (S. cerevisiae)
Cpgi22579 X 7762500 to 7763073 573 CpG island CpG island 22579
Tssr160423 X 7762548 to 7762562 14 + TSS region transcription start site region 160423
Tfe3 X 7762560 to 7775202 12642 + protein coding gene transcription factor E3
Tssr160424 X 7762652 to 7762689 37 + TSS region transcription start site region 160424
Tssr160425 X 7762703 to 7762729 26 + TSS region transcription start site region 160425
Tssr160426 X 7762789 to 7762809 20 + TSS region transcription start site region 160426
Tssr160427 X 7762812 to 7762837 25 + TSS region transcription start site region 160427
Tssr160428 X 7762882 to 7762898 16 + TSS region transcription start site region 160428
Tssr160429 X 7762903 to 7762914 11 + TSS region transcription start site region 160429
Tssr162815 X 7763741 to 7763788 47 - TSS region transcription start site region 162815
Tssr160430 X 7763951 to 7763965 14 + TSS region transcription start site region 160430
Tssr160431 X 7764250 to 7764263 13 + TSS region transcription start site region 160431
Tssr160432 X 7764276 to 7764287 11 + TSS region transcription start site region 160432
Tssr160433 X 7764310 to 7764321 11 + TSS region transcription start site region 160433
Tssr160434 X 7764323 to 7764351 28 + TSS region transcription start site region 160434
Tssr160435 X 7764398 to 7764415 17 + TSS region transcription start site region 160435
Tssr162816 X 7765797 to 7765811 14 - TSS region transcription start site region 162816
Tssr160436 X 7767524 to 7767557 33 + TSS region transcription start site region 160436
Gm39487 X 7772603 to 7789949 17346 - lncRNA gene predicted gene, 39487
Tssr160437 X 7774769 to 7774781 12 + TSS region transcription start site region 160437
Gripap1 X 7789961 to 7820567 30606 + protein coding gene GRIP1 associated protein 1
Tssr160438 X 7789986 to 7790004 18 + TSS region transcription start site region 160438
Tssr160439 X 7790013 to 7790029 16 + TSS region transcription start site region 160439
Tssr162817 X 7790400 to 7790406 6 - TSS region transcription start site region 162817
Tssr160440 X 7794297 to 7794313 16 + TSS region transcription start site region 160440
Tssr160441 X 7794330 to 7794344 14 + TSS region transcription start site region 160441
Tssr160442 X 7794390 to 7794414 24 + TSS region transcription start site region 160442
Tssr160443 X 7800469 to 7800494 25 + TSS region transcription start site region 160443
Mir1198 X 7807101 to 7807221 120 + miRNA gene microRNA 1198
Cpgi22580 X 7810266 to 7810428 162 CpG island CpG island 22580
Tssr160444 X 7822890 to 7822901 11 + TSS region transcription start site region 160444
Kcnd1 X 7823759 to 7838278 14519 + protein coding gene potassium voltage-gated channel, Shal-related family, member 1
DXImx3 X 7828029 to 7828179 150 DNA segment DNA segment, Chr X, Immunex 3
Cpgi22581 X 7841105 to 7843031 1926 CpG island CpG island 22581
Tssr160445 X 7841353 to 7841383 30 + TSS region transcription start site region 160445
Otud5 X 7841364 to 7876626 35262 + protein coding gene OTU domain containing 5
Tssr160446 X 7841760 to 7841774 14 + TSS region transcription start site region 160446
Tssr160447 X 7841800 to 7841866 66 + TSS region transcription start site region 160447
Tssr160448 X 7841927 to 7841934 7 + TSS region transcription start site region 160448
Tssr160449 X 7841941 to 7841966 25 + TSS region transcription start site region 160449
Tssr160450 X 7841991 to 7842008 17 + TSS region transcription start site region 160450
Tssr160451 X 7842011 to 7842022 11 + TSS region transcription start site region 160451
Tssr160452 X 7842027 to 7842038 11 + TSS region transcription start site region 160452
Tssr160453 X 7842067 to 7842128 61 + TSS region transcription start site region 160453
Tssr160454 X 7842527 to 7842612 85 + TSS region transcription start site region 160454
Tssr160455 X 7864752 to 7864765 13 + TSS region transcription start site region 160455
Tssr160456 X 7873863 to 7873879 16 + TSS region transcription start site region 160456
Tssr160457 X 7874361 to 7874447 86 + TSS region transcription start site region 160457
Tssr160458 X 7874474 to 7874485 11 + TSS region transcription start site region 160458
Cpgi22582 X 7878029 to 7878876 847 CpG island CpG island 22582
Tssr160459 X 7878298 to 7878314 16 + TSS region transcription start site region 160459
Pim2 X 7878306 to 7883432 5126 + protein coding gene proviral integration site 2
Tssr160460 X 7878706 to 7878717 11 + TSS region transcription start site region 160460
Tssr160461 X 7878742 to 7878755 13 + TSS region transcription start site region 160461
Tssr160462 X 7882073 to 7882106 33 + TSS region transcription start site region 160462
Tssr160463 X 7882173 to 7882187 14 + TSS region transcription start site region 160463
Tssr160464 X 7882194 to 7882219 25 + TSS region transcription start site region 160464
Tssr160465 X 7882380 to 7882402 22 + TSS region transcription start site region 160465
Tssr160466 X 7884022 to 7884055 33 + TSS region transcription start site region 160466
Slc35a2 X 7884034 to 7894492 10458 + protein coding gene solute carrier family 35 (UDP-galactose transporter), member A2
Cpgi22583 X 7884056 to 7884627 571 CpG island CpG island 22583
Tssr160467 X 7884296 to 7884313 17 + TSS region transcription start site region 160467
Tssr160468 X 7884321 to 7884339 18 + TSS region transcription start site region 160468
DXImx14 X 7893703 to 7893877 174 DNA segment DNA segment, Chr X, Immunex 14
Pqbp1 X 7894519 to 7899269 4750 - protein coding gene polyglutamine binding protein 1
Tssr162818 X 7898638 to 7898654 16 - TSS region transcription start site region 162818
Tssr162819 X 7898864 to 7898912 48 - TSS region transcription start site region 162819
Tssr162820 X 7898950 to 7898983 33 - TSS region transcription start site region 162820
Cpgi22584 X 7899026 to 7899807 781 CpG island CpG island 22584
Tssr162821 X 7899196 to 7899206 10 - TSS region transcription start site region 162821
Tssr5585 X 7899198 to 7899200 2 + TSS region transcription start site region 5585
Tssr162822 X 7899220 to 7899271 51 - TSS region transcription start site region 162822
Tssr160469 X 7899334 to 7899341 7 + TSS region transcription start site region 160469
Timm17b X 7899336 to 7907652 8316 + protein coding gene translocase of inner mitochondrial membrane 17b
Tssr160470 X 7899350 to 7899362 12 + TSS region transcription start site region 160470
Tssr160471 X 7899388 to 7899432 44 + TSS region transcription start site region 160471
Gm10491 X 7907693 to 7907835 142 - protein coding gene predicted gene 10491
Gm10490 X 7909542 to 7909927 385 + protein coding gene predicted gene 10490
DXImx15 X 7913757 to 7913897 140 DNA segment DNA segment, Chr X, Immunex 15
Tssr160472 X 7919816 to 7919905 89 + TSS region transcription start site region 160472
Pcsk1n X 7919822 to 7924410 4588 + protein coding gene proprotein convertase subtilisin/kexin type 1 inhibitor
Cpgi22585 X 7919847 to 7920043 196 CpG island CpG island 22585
Tssr160473 X 7919910 to 7919920 10 + TSS region transcription start site region 160473
Tssr160474 X 7920007 to 7920020 13 + TSS region transcription start site region 160474
Cpgi22586 X 7922004 to 7922749 745 CpG island CpG island 22586
Tssr160475 X 7922049 to 7922067 18 + TSS region transcription start site region 160475
Tssr160476 X 7922077 to 7922106 29 + TSS region transcription start site region 160476
Tssr160477 X 7922237 to 7922259 22 + TSS region transcription start site region 160477
Tssr160478 X 7922294 to 7922319 25 + TSS region transcription start site region 160478
Tssr160479 X 7922320 to 7922351 31 + TSS region transcription start site region 160479
Tssr160480 X 7922368 to 7922409 41 + TSS region transcription start site region 160480
Tssr162823 X 7922391 to 7922402 11 - TSS region transcription start site region 162823
Tssr160481 X 7922414 to 7922428 14 + TSS region transcription start site region 160481
Cpgi22587 X 7922878 to 7923056 178 CpG island CpG island 22587
Tssr160482 X 7922942 to 7922975 33 + TSS region transcription start site region 160482
Tssr162824 X 7923167 to 7923191 24 - TSS region transcription start site region 162824
Tssr5586 X 7923168 to 7923195 27 + TSS region transcription start site region 5586
Eras X 7924276 to 7928607 4331 - protein coding gene ES cell-expressed Ras
Tssr162825 X 7928507 to 7928526 19 - TSS region transcription start site region 162825
Hdac6 X 7930120 to 7947889 17769 - protein coding gene histone deacetylase 6
DXImx16 X 7934813 to 7934997 184 DNA segment DNA segment, Chr X, Immunex 16
DXImx17 X 7935396 to 7935543 147 DNA segment DNA segment, Chr X, Immunex 17
Cpgi22588 X 7947591 to 7948424 833 CpG island CpG island 22588
Tssr162826 X 7947664 to 7947674 10 - TSS region transcription start site region 162826
Tssr162827 X 7947743 to 7947751 8 - TSS region transcription start site region 162827
Tssr162828 X 7947763 to 7947776 13 - TSS region transcription start site region 162828
Tssr162829 X 7947779 to 7947815 36 - TSS region transcription start site region 162829
Tssr162830 X 7947819 to 7947832 13 - TSS region transcription start site region 162830
Tssr162831 X 7947848 to 7947857 9 - TSS region transcription start site region 162831
Gm39488 X 7948101 to 8033483 85382 + lncRNA gene predicted gene, 39488
Psmb6-ps X 7950156 to 7950868 712 - pseudogene proteasome (prosome, macropain) subunit, beta type 6, pseudogene
Gata1 X 7959260 to 7976682 17422 - protein coding gene GATA binding protein 1
Tssr162832 X 7964166 to 7964191 25 - TSS region transcription start site region 162832
Tssr160483 X 7966340 to 7966366 26 + TSS region transcription start site region 160483
Tssr162833 X 7967802 to 7967812 10 - TSS region transcription start site region 162833
Tssr162834 X 7967817 to 7967875 58 - TSS region transcription start site region 162834
Tssr162835 X 7976544 to 7976562 18 - TSS region transcription start site region 162835
Tssr162836 X 7976588 to 7976607 19 - TSS region transcription start site region 162836
Tssr162837 X 7977968 to 7977975 7 - TSS region transcription start site region 162837
Tssr162838 X 7978027 to 7978040 13 - TSS region transcription start site region 162838
Glod5 X 8004201 to 8018492 14291 - protein coding gene glyoxalase domain containing 5
Tssr162839 X 8005932 to 8005949 17 - TSS region transcription start site region 162839
Tssr162840 X 8005956 to 8005981 25 - TSS region transcription start site region 162840
Tssr162841 X 8015568 to 8015581 13 - TSS region transcription start site region 162841
Tssr162842 X 8015811 to 8015839 28 - TSS region transcription start site region 162842
Tssr162843 X 8018449 to 8018490 41 - TSS region transcription start site region 162843
Tssr162844 X 8018493 to 8018502 9 - TSS region transcription start site region 162844
Gm9429 X 8034212 to 8035079 867 + pseudogene predicted gene 9429
Rpl22-ps1 X 8038611 to 8038996 385 - pseudogene ribosomal protein L22, pseudogene 1
Tssr162845 X 8039005 to 8039019 14 - TSS region transcription start site region 162845
Gm14799 X 8042465 to 8042893 428 - pseudogene predicted gene 14799
Gm14820 X 8042943 to 8074619 31676 + antisense lncRNA gene predicted gene 14820