Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:75448517-80258528

Filter by:
198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq12 X 36000000 to 78000000 42000000 QTL body mass index QTL 12
Hstx1 X 72410246 to 78557206 6146960 QTL hybrid sterility, X Chromosome QTL 1
Brcc3 X 75416628 to 75454001 37373 + protein coding gene BRCA1/BRCA2-containing complex, subunit 3
Gm15379 X 75458812 to 75459456 644 + pseudogene predicted gene 15379
Gm15385 X 75459963 to 75485753 25790 + pseudogene predicted gene 15385
Gm8666 X 75475232 to 75475523 291 - pseudogene predicted gene 8666
Cpgi22807 X 75475403 to 75475661 258 CpG island CpG island 22807
Tssr163667 X 75475629 to 75475663 34 - TSS region transcription start site region 163667
Vbp1 X 75514299 to 75534942 20643 + protein coding gene von Hippel-Lindau binding protein 1
Tssr161356 X 75514302 to 75514316 14 + TSS region transcription start site region 161356
Tssr161357 X 75514318 to 75514340 22 + TSS region transcription start site region 161357
Gm15384 X 75551117 to 75551824 707 + antisense lncRNA gene predicted gene 15384
Gm39522 X 75561475 to 75565216 3741 - lncRNA gene predicted gene, 39522
Rab39b X 75572046 to 75578231 6185 - protein coding gene RAB39B, member RAS oncogene family
Gm15063 X 75573452 to 75575268 1816 + antisense lncRNA gene predicted gene 15063
Cpgi22808 X 75577897 to 75578181 284 CpG island CpG island 22808
Tssr163668 X 75578188 to 75578247 59 - TSS region transcription start site region 163668
Gm25421 X 75578808 to 75578971 163 - snRNA gene predicted gene, 25421
Tssr161358 X 75668104 to 75668116 12 + TSS region transcription start site region 161358
Tssr163669 X 75673329 to 75673350 21 - TSS region transcription start site region 163669
Gm15065 X 75705409 to 75705681 272 + pseudogene predicted gene 15065
Gm7153 X 75723672 to 75724126 454 + pseudogene predicted gene 7153
4933407K13Rik X 75725458 to 75764699 39241 - lncRNA gene RIKEN cDNA 4933407K13 gene
Hdlq108 X 75728354 to 75728354 0 QTL HDL QTL 108
Tssr163670 X 75764636 to 75764654 18 - TSS region transcription start site region 163670
Tssr163671 X 75764662 to 75764708 46 - TSS region transcription start site region 163671
Pls3 X 75785654 to 75875178 89524 - protein coding gene plastin 3 (T-isoform)
Tssr163672 X 75842250 to 75842256 6 - TSS region transcription start site region 163672
Tssr163673 X 75842946 to 75842963 17 - TSS region transcription start site region 163673
Tssr163674 X 75842974 to 75842993 19 - TSS region transcription start site region 163674
Tssr163675 X 75843016 to 75843025 9 - TSS region transcription start site region 163675
Tssr163676 X 75843128 to 75843139 11 - TSS region transcription start site region 163676
Tssr163677 X 75843161 to 75843175 14 - TSS region transcription start site region 163677
Tssr163678 X 75843189 to 75843198 9 - TSS region transcription start site region 163678
Tssr163679 X 75843222 to 75843236 14 - TSS region transcription start site region 163679
Tssr163680 X 75843241 to 75843264 23 - TSS region transcription start site region 163680
Tssr163681 X 75874522 to 75874533 11 - TSS region transcription start site region 163681
Tssr163682 X 75874536 to 75874590 54 - TSS region transcription start site region 163682
Tssr163683 X 75875101 to 75875151 50 - TSS region transcription start site region 163683
Gm23320 X 75886083 to 75886209 126 + snoRNA gene predicted gene, 23320
Tssr161359 X 75915104 to 75915112 8 + TSS region transcription start site region 161359
Oat-rs1 X 75915216 to 75916526 1310 + pseudogene ornithine aminotransferase related sequence 1
Gm14715 X 75916131 to 75930227 14096 - lincRNA gene predicted gene 14715
Gm21025 X 75965830 to 75967250 1420 + pseudogene predicted gene, 21025
Cpgi22809 X 75966291 to 75966839 548 CpG island CpG island 22809
Gm7155 X 75971453 to 75973123 1670 - pseudogene predicted gene 7155
Gm8692 X 75987178 to 75987615 437 - pseudogene predicted gene 8692
Tssr163684 X 75987629 to 75987638 9 - TSS region transcription start site region 163684
Tssr163685 X 76129029 to 76129071 42 - TSS region transcription start site region 163685
Gm14710 X 76153331 to 76162605 9274 - pseudogene predicted gene 14710
Gm5397 X 76196108 to 76198742 2634 + pseudogene predicted gene 5397
Gm14711 X 76227109 to 76228230 1121 + pseudogene predicted gene 14711
Gm14707 X 76243690 to 76244272 582 - antisense lncRNA gene predicted gene 14707
Gm14717 X 76246984 to 76261392 14408 - antisense lncRNA gene predicted gene 14717
Tssr161360 X 76264281 to 76264312 31 + TSS region transcription start site region 161360
Cldn34b3 X 76264306 to 76267673 3367 + protein coding gene claudin 34B3
Gm41896 X 76273647 to 76275280 1633 + lncRNA gene predicted gene, 41896
Gm14712 X 76301183 to 76301954 771 - pseudogene predicted gene 14712
Tssr163686 X 76301682 to 76301693 11 - TSS region transcription start site region 163686
Magea7-ps X 76347393 to 76347635 242 + pseudogene melanoma antigen, family A, 7, pseudogene
Gm14709 X 76356827 to 76357130 303 + pseudogene predicted gene 14709
Tssr161361 X 76385331 to 76385339 8 + TSS region transcription start site region 161361
Cldn34b4 X 76393350 to 76397979 4629 + protein coding gene claudin 34B4
Tssr161362 X 76393361 to 76393372 11 + TSS region transcription start site region 161362
Gm5793 X 76538909 to 76539538 629 - pseudogene predicted pseudogene 5793
Cldn34d X 76582610 to 76602924 20314 - protein coding gene claudin 34D
Tssr163687 X 76602896 to 76602945 49 - TSS region transcription start site region 163687
Gm14716 X 76631434 to 76632151 717 + pseudogene predicted gene 14716
Tssr163688 X 76664611 to 76664613 2 - TSS region transcription start site region 163688
Gm14713 X 76737639 to 76738818 1179 + pseudogene predicted gene 14713
Gm26041 X 76788422 to 76788529 107 - rRNA gene predicted gene, 26041
Gm23280 X 76830034 to 76830172 138 + snoRNA gene predicted gene, 23280
Gm14706 X 76919856 to 76920110 254 - pseudogene predicted gene 14706
Gm14714 X 76980706 to 76981144 438 + pseudogene predicted gene 14714
DXMit45 X 77080730 to 77080865 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 45
Gm5398 X 77289832 to 77290815 983 - pseudogene predicted gene 5398
Gm5757 X 77292661 to 77293188 527 + pseudogene predicted gene 5757
5830424K16Rik X 77342329 to 77343999 1670 unclassified gene RIKEN cDNA 5830424K16 gene
Tssr161363 X 77368073 to 77368074 1 + TSS region transcription start site region 161363
Gm5937 X 77456586 to 77457228 642 + pseudogene predicted gene 5937
Cpgi22810 X 77510684 to 77512021 1337 CpG island CpG island 22810
Tssr161364 X 77510877 to 77510897 20 + TSS region transcription start site region 161364
Tssr161365 X 77510909 to 77510926 17 + TSS region transcription start site region 161365
Tssr161366 X 77511002 to 77511100 98 + TSS region transcription start site region 161366
Tbl1x X 77511013 to 77662983 151970 + protein coding gene transducin (beta)-like 1 X-linked
Tssr161367 X 77511101 to 77511137 36 + TSS region transcription start site region 161367
Tssr161368 X 77511222 to 77511229 7 + TSS region transcription start site region 161368
Tssr161369 X 77511241 to 77511250 9 + TSS region transcription start site region 161369
Tssr163689 X 77511807 to 77511821 14 - TSS region transcription start site region 163689
Tssr5639 X 77534282 to 77534284 2 + TSS region transcription start site region 5639
Gm23121 X 77579487 to 77579659 172 + snRNA gene predicted gene, 23121
Cldn34-ps X 77674836 to 77675435 599 - pseudogene claudin 34, pseudogene
Gm14746 X 77717052 to 77717983 931 - pseudogene predicted gene 14746
Gm14748 X 77733668 to 77737745 4077 + pseudogene predicted gene 14748
Gm8722 X 77757378 to 77758146 768 - pseudogene predicted gene 8722
Prkx X 77761411 to 77796278 34867 - protein coding gene protein kinase, X-linked
Cpgi22811 X 77795282 to 77796289 1007 CpG island CpG island 22811
Tssr163690 X 77795921 to 77795985 64 - TSS region transcription start site region 163690
Tssr163691 X 77795989 to 77796007 18 - TSS region transcription start site region 163691
Gm14742 X 77802351 to 77803280 929 - lincRNA gene predicted gene 14742
Pbsn X 77837898 to 77853500 15602 - protein coding gene probasin
Tssr5640 X 77837946 to 77837953 7 - TSS region transcription start site region 5640
Tssr163692 X 77837966 to 77837976 10 - TSS region transcription start site region 163692
Tssr161370 X 77845043 to 77845048 5 + TSS region transcription start site region 161370
Tssr163693 X 77845045 to 77845088 43 - TSS region transcription start site region 163693
Tssr163694 X 77848004 to 77848017 13 - TSS region transcription start site region 163694
Tssr161371 X 77848040 to 77848044 4 + TSS region transcription start site region 161371
Tssr163695 X 77848048 to 77848051 3 - TSS region transcription start site region 163695
Tssr163696 X 77848095 to 77848109 14 - TSS region transcription start site region 163696
Tssr163697 X 77853474 to 77853504 30 - TSS region transcription start site region 163697
Tssr163698 X 77853517 to 77853528 11 - TSS region transcription start site region 163698
Gm14744 X 77864758 to 77870033 5275 + protein coding gene predicted gene 14744
5430402E10Rik X 77919786 to 77925062 5276 - protein coding gene RIKEN cDNA 5430402E10 gene
Gm14750 X 77988363 to 77992734 4371 + pseudogene predicted gene 14750
Gm14753 X 78021042 to 78021287 245 - pseudogene predicted gene 14753
Tssr163699 X 78021330 to 78021343 13 - TSS region transcription start site region 163699
Tssr5641 X 78059338 to 78059340 2 + TSS region transcription start site region 5641
Gm16458 X 78059390 to 78066587 7197 + pseudogene predicted pseudogene 16458
Tssr161372 X 78070317 to 78070324 7 + TSS region transcription start site region 161372
Obp1a X 78085505 to 78091374 5869 - protein coding gene odorant binding protein IA
Tssr163700 X 78091338 to 78091344 6 - TSS region transcription start site region 163700
Tssr163701 X 78091365 to 78091377 12 - TSS region transcription start site region 163701
Tssr161373 X 78125466 to 78125470 4 + TSS region transcription start site region 161373
Gm5938 X 78125467 to 78130403 4936 + protein coding gene predicted gene 5938
Tssr161374 X 78125499 to 78125506 7 + TSS region transcription start site region 161374
Tssr5642 X 78186774 to 78186780 6 + TSS region transcription start site region 5642
Obp1b X 78186808 to 78192242 5434 + protein coding gene odorant binding protein IB
Gm14743 X 78240462 to 78245921 5459 - protein coding gene predicted gene 14743
DXMit43a X 78332219 to 78332376 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 43a
Gm8749 X 78357794 to 78358124 330 - pseudogene predicted gene 8749
Tssr161375 X 78369636 to 78369671 35 + TSS region transcription start site region 161375
4930480E11Rik X 78369643 to 78371128 1485 + protein coding gene RIKEN cDNA 4930480E11 gene
Gm14749 X 78375313 to 78375758 445 + pseudogene predicted gene 14749
Gm8754 X 78390705 to 78391224 519 + pseudogene predicted gene 8754
DXMit43b X 78396520 to 78396655 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 43b
Gm14752 X 78405676 to 78409435 3759 + pseudogene predicted gene 14752
Gm14745 X 78416198 to 78417293 1095 + pseudogene predicted gene 14745
Tssr161376 X 78446635 to 78446637 2 + TSS region transcription start site region 161376
Prrg1 X 78449613 to 78583896 134283 - protein coding gene proline rich Gla (G-carboxyglutamic acid) 1
Tssr163702 X 78452653 to 78452661 8 - TSS region transcription start site region 163702
Tssr163703 X 78465208 to 78465213 5 - TSS region transcription start site region 163703
Tssr163704 X 78477695 to 78477698 3 - TSS region transcription start site region 163704
3426406K10Rik X 78531001 to 78534033 3032 unclassified gene RIKEN cDNA 3426406K10 gene
Tssr163705 X 78544957 to 78544959 2 - TSS region transcription start site region 163705
Tssr163706 X 78545276 to 78545286 10 - TSS region transcription start site region 163706
Gm22843 X 78550746 to 78550879 133 - snoRNA gene predicted gene, 22843
Tssr163707 X 78552758 to 78552762 4 - TSS region transcription start site region 163707
Tssr163708 X 78552775 to 78552786 11 - TSS region transcription start site region 163708
Tssr163709 X 78552793 to 78552813 20 - TSS region transcription start site region 163709
Tssr163710 X 78552818 to 78552823 5 - TSS region transcription start site region 163710
Tssr163711 X 78554267 to 78554269 2 - TSS region transcription start site region 163711
DXMit60 X 78557105 to 78557206 101 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 60
B930042K01Rik X 78574533 to 78577524 2991 unclassified gene RIKEN cDNA B930042K01 gene
Cpgi22812 X 78583636 to 78583839 203 CpG island CpG island 22812
Tssr163712 X 78583783 to 78583796 13 - TSS region transcription start site region 163712
Tssr163713 X 78583799 to 78583810 11 - TSS region transcription start site region 163713
Tssr163714 X 78583814 to 78583821 7 - TSS region transcription start site region 163714
Tssr163715 X 78583850 to 78583859 9 - TSS region transcription start site region 163715
Tssr163716 X 78583882 to 78583901 19 - TSS region transcription start site region 163716
Gm8757 X 78624706 to 78625077 371 + pseudogene predicted gene 8757
Gm8761 X 78655788 to 78656739 951 - pseudogene predicted gene 8761
Gm14747 X 78682205 to 78683188 983 - pseudogene predicted gene 14747
Tssr161377 X 78737737 to 78737757 20 + TSS region transcription start site region 161377
Fam47c X 78737763 to 78739401 1638 + protein coding gene family with sequence similarity 47, member C
Tssr161378 X 78737774 to 78737783 9 + TSS region transcription start site region 161378
Tssr161379 X 78737795 to 78737802 7 + TSS region transcription start site region 161379
Gm8770 X 78785747 to 78786855 1108 + pseudogene predicted gene 8770
Gm5939 X 78855408 to 78858281 2873 - pseudogene predicted pseudogene 5939
Cpgi22813 X 78856864 to 78857024 160 CpG island CpG island 22813
Cypt13 X 78861771 to 78862276 505 unclassified gene cysteine-rich perinuclear theca 13
Gm23556 X 78908549 to 78908640 91 - miRNA gene predicted gene, 23556
Tssr161380 X 78954017 to 78954020 3 + TSS region transcription start site region 161380
Gm14751 X 79008747 to 79008968 221 - pseudogene predicted gene 14751
Gm17902 X 79186106 to 79186617 511 + pseudogene predicted gene, 17902
Rps24-ps3 X 79195047 to 79195448 401 + pseudogene ribosomal protein S24, pseudogene 3
Cfap47 X 79266559 to 79517285 250726 - unclassified gene cilia and flagella associated protein 47
DXMit77 X 79365542 to 79365662 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 77
Cpgi22814 X 79517312 to 79517507 195 CpG island CpG island 22814
Tssr163717 X 79517333 to 79517376 43 - TSS region transcription start site region 163717
DXMit44 X 79576419 to 79576600 181 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 44
Gm17817 X 79616703 to 79617599 896 + pseudogene predicted gene, 17817
Mageb16 X 79623231 to 79671435 48204 - protein coding gene melanoma antigen family B, 16
Gm8792 X 79631165 to 79631874 709 - pseudogene predicted gene 8792
Tssr163718 X 79631174 to 79631199 25 - TSS region transcription start site region 163718
Tssr163719 X 79635547 to 79635558 11 - TSS region transcription start site region 163719
Tssr163720 X 79635575 to 79635587 12 - TSS region transcription start site region 163720
Tssr163721 X 79643593 to 79643614 21 - TSS region transcription start site region 163721
Tssr163722 X 79671434 to 79671438 4 - TSS region transcription start site region 163722
Tssr163723 X 79671522 to 79671546 24 - TSS region transcription start site region 163723
Gm4772 X 79902724 to 79903566 842 - pseudogene predicted gene 4772
Tssr161381 X 79904358 to 79904363 5 + TSS region transcription start site region 161381
Tssr163724 X 79918455 to 79918484 29 - TSS region transcription start site region 163724
Gm4773 X 80061011 to 80061712 701 - pseudogene predicted gene 4773
Gm18107 X 80167983 to 80168492 509 - pseudogene predicted gene, 18107
Gm14760 X 80193854 to 80194852 998 - pseudogene predicted gene 14760
Gm6952 X 80197081 to 80197239 158 - pseudogene predicted gene 6952
Tssr163725 X 80197275 to 80197280 5 - TSS region transcription start site region 163725
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4