Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:75097897-76058181

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dkc1 X 75095854 to 75109777 13923 + protein coding gene dyskeratosis congenita 1, dyskerin
Gm25520 X 75101409 to 75101526 117 + snoRNA gene predicted gene, 25520
Mpp1 X 75109733 to 75131016 21283 - protein coding gene membrane protein, palmitoylated
Tssr163652 X 75110601 to 75110638 37 - TSS region transcription start site region 163652
Tssr163653 X 75111991 to 75112011 20 - TSS region transcription start site region 163653
Tssr163654 X 75113642 to 75113660 18 - TSS region transcription start site region 163654
Tssr163655 X 75114665 to 75114675 10 - TSS region transcription start site region 163655
Tssr163656 X 75126962 to 75126971 9 - TSS region transcription start site region 163656
Tssr161351 X 75127119 to 75127131 12 + TSS region transcription start site region 161351
Cpgi22803 X 75130663 to 75131134 471 CpG island CpG island 22803
Tssr163657 X 75130892 to 75130905 13 - TSS region transcription start site region 163657
Tssr163658 X 75130914 to 75130994 80 - TSS region transcription start site region 163658
Tssr163659 X 75130996 to 75131009 13 - TSS region transcription start site region 163659
Cpgi22804 X 75143210 to 75143483 273 CpG island CpG island 22804
Gm15378 X 75143424 to 75143630 206 + pseudogene predicted gene 15378
Fam220-ps X 75143688 to 75144470 782 + pseudogene family with sequence similarity 220, pseudogene
Smim9 X 75146057 to 75163756 17699 - protein coding gene small integral membrane protein 9
Cpgi22805 X 75155652 to 75155878 226 CpG island CpG island 22805
Gm8503 X 75155819 to 75156273 454 + pseudogene predicted gene 8503
F8 X 75172715 to 75382615 209900 - protein coding gene coagulation factor VIII
Gm6039 X 75233063 to 75234312 1249 + pseudogene predicted gene 6039
Tssr164733 X 75233447 to 75233466 19 + TSS region transcription start site region 164733
Gm8522 X 75271010 to 75272938 1928 - pseudogene predicted gene 8522
Tssr163660 X 75272956 to 75272972 16 - TSS region transcription start site region 163660
Tssr163661 X 75379786 to 75379791 5 - TSS region transcription start site region 163661
Tssr163662 X 75379795 to 75379823 28 - TSS region transcription start site region 163662
Tssr161352 X 75382384 to 75382395 11 + TSS region transcription start site region 161352
Fundc2 X 75382399 to 75396459 14060 + protein coding gene FUN14 domain containing 2
Tssr161353 X 75382407 to 75382430 23 + TSS region transcription start site region 161353
Cmc4 X 75404846 to 75416584 11738 - protein coding gene C-x(9)-C motif containing 4
Mtcp1 X 75410442 to 75416584 6142 - protein coding gene mature T cell proliferation 1
Cpgi22806 X 75416162 to 75416779 617 CpG island CpG island 22806
Tssr163663 X 75416294 to 75416327 33 - TSS region transcription start site region 163663
Tssr5638 X 75416370 to 75416416 46 - TSS region transcription start site region 5638
Tssr163664 X 75416510 to 75416528 18 - TSS region transcription start site region 163664
Tssr163665 X 75416533 to 75416555 22 - TSS region transcription start site region 163665
Tssr163666 X 75416562 to 75416591 29 - TSS region transcription start site region 163666
Brcc3 X 75416628 to 75454001 37373 + protein coding gene BRCA1/BRCA2-containing complex, subunit 3
Tssr161354 X 75416637 to 75416649 12 + TSS region transcription start site region 161354
Tssr161355 X 75416669 to 75416722 53 + TSS region transcription start site region 161355
Gm15379 X 75458812 to 75459456 644 + pseudogene predicted gene 15379
Gm15385 X 75459963 to 75485753 25790 + pseudogene predicted gene 15385
Gm8666 X 75475232 to 75475523 291 - pseudogene predicted gene 8666
Cpgi22807 X 75475403 to 75475661 258 CpG island CpG island 22807
Tssr163667 X 75475629 to 75475663 34 - TSS region transcription start site region 163667
Vbp1 X 75514299 to 75534942 20643 + protein coding gene von Hippel-Lindau binding protein 1
Tssr161356 X 75514302 to 75514316 14 + TSS region transcription start site region 161356
Tssr161357 X 75514318 to 75514340 22 + TSS region transcription start site region 161357
Gm15384 X 75551117 to 75551824 707 + antisense lncRNA gene predicted gene 15384
Gm39522 X 75561475 to 75565216 3741 - lncRNA gene predicted gene, 39522
Rab39b X 75572046 to 75578231 6185 - protein coding gene RAB39B, member RAS oncogene family
Gm15063 X 75573452 to 75575268 1816 + antisense lncRNA gene predicted gene 15063
Cpgi22808 X 75577897 to 75578181 284 CpG island CpG island 22808
Tssr163668 X 75578188 to 75578247 59 - TSS region transcription start site region 163668
Gm25421 X 75578808 to 75578971 163 - snRNA gene predicted gene, 25421
Tssr161358 X 75668104 to 75668116 12 + TSS region transcription start site region 161358
Tssr163669 X 75673329 to 75673350 21 - TSS region transcription start site region 163669
Gm15065 X 75705409 to 75705681 272 + pseudogene predicted gene 15065
Gm7153 X 75723672 to 75724126 454 + pseudogene predicted gene 7153
4933407K13Rik X 75725458 to 75764699 39241 - lncRNA gene RIKEN cDNA 4933407K13 gene
Hdlq108 X 75728354 to 75728354 0 QTL HDL QTL 108
Tssr163670 X 75764636 to 75764654 18 - TSS region transcription start site region 163670
Tssr163671 X 75764662 to 75764708 46 - TSS region transcription start site region 163671
Pls3 X 75785654 to 75875178 89524 - protein coding gene plastin 3 (T-isoform)
Tssr163672 X 75842250 to 75842256 6 - TSS region transcription start site region 163672
Tssr163673 X 75842946 to 75842963 17 - TSS region transcription start site region 163673
Tssr163674 X 75842974 to 75842993 19 - TSS region transcription start site region 163674
Tssr163675 X 75843016 to 75843025 9 - TSS region transcription start site region 163675
Tssr163676 X 75843128 to 75843139 11 - TSS region transcription start site region 163676
Tssr163677 X 75843161 to 75843175 14 - TSS region transcription start site region 163677
Tssr163678 X 75843189 to 75843198 9 - TSS region transcription start site region 163678
Tssr163679 X 75843222 to 75843236 14 - TSS region transcription start site region 163679
Tssr163680 X 75843241 to 75843264 23 - TSS region transcription start site region 163680
Tssr163681 X 75874522 to 75874533 11 - TSS region transcription start site region 163681
Tssr163682 X 75874536 to 75874590 54 - TSS region transcription start site region 163682
Tssr163683 X 75875101 to 75875151 50 - TSS region transcription start site region 163683
Gm23320 X 75886083 to 75886209 126 + snoRNA gene predicted gene, 23320
Tssr161359 X 75915104 to 75915112 8 + TSS region transcription start site region 161359
Oat-rs1 X 75915216 to 75916526 1310 + pseudogene ornithine aminotransferase related sequence 1
Gm14715 X 75916131 to 75930227 14096 - lincRNA gene predicted gene 14715
Gm21025 X 75965830 to 75967250 1420 + pseudogene predicted gene, 21025
Cpgi22809 X 75966291 to 75966839 548 CpG island CpG island 22809
Gm7155 X 75971453 to 75973123 1670 - pseudogene predicted gene 7155
Gm8692 X 75987178 to 75987615 437 - pseudogene predicted gene 8692
Tssr163684 X 75987629 to 75987638 9 - TSS region transcription start site region 163684