Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:75093361-77693372

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22802 X 75095825 to 75096310 485 CpG island CpG island 22802
Dkc1 X 75095854 to 75109777 13923 + protein coding gene dyskeratosis congenita 1, dyskerin
Tssr161349 X 75095885 to 75095922 37 + TSS region transcription start site region 161349
Tssr161350 X 75096039 to 75096109 70 + TSS region transcription start site region 161350
Gm25520 X 75101409 to 75101526 117 + snoRNA gene predicted gene, 25520
Mpp1 X 75109733 to 75131016 21283 - protein coding gene membrane protein, palmitoylated
Tssr163652 X 75110601 to 75110638 37 - TSS region transcription start site region 163652
Tssr163653 X 75111991 to 75112011 20 - TSS region transcription start site region 163653
Tssr163654 X 75113642 to 75113660 18 - TSS region transcription start site region 163654
Tssr163655 X 75114665 to 75114675 10 - TSS region transcription start site region 163655
Tssr163656 X 75126962 to 75126971 9 - TSS region transcription start site region 163656
Tssr161351 X 75127119 to 75127131 12 + TSS region transcription start site region 161351
Cpgi22803 X 75130663 to 75131134 471 CpG island CpG island 22803
Tssr163657 X 75130892 to 75130905 13 - TSS region transcription start site region 163657
Tssr163658 X 75130914 to 75130994 80 - TSS region transcription start site region 163658
Tssr163659 X 75130996 to 75131009 13 - TSS region transcription start site region 163659
Cpgi22804 X 75143210 to 75143483 273 CpG island CpG island 22804
Gm15378 X 75143424 to 75143630 206 + pseudogene predicted gene 15378
Fam220-ps X 75143688 to 75144470 782 + pseudogene family with sequence similarity 220, pseudogene
Smim9 X 75146057 to 75163756 17699 - protein coding gene small integral membrane protein 9
Cpgi22805 X 75155652 to 75155878 226 CpG island CpG island 22805
Gm8503 X 75155819 to 75156273 454 + pseudogene predicted gene 8503
F8 X 75172715 to 75382615 209900 - protein coding gene coagulation factor VIII
Gm6039 X 75233063 to 75234312 1249 + pseudogene predicted gene 6039
Tssr164733 X 75233447 to 75233466 19 + TSS region transcription start site region 164733
Gm8522 X 75271010 to 75272938 1928 - pseudogene predicted gene 8522
Tssr163660 X 75272956 to 75272972 16 - TSS region transcription start site region 163660
Tssr163661 X 75379786 to 75379791 5 - TSS region transcription start site region 163661
Tssr163662 X 75379795 to 75379823 28 - TSS region transcription start site region 163662
Tssr161352 X 75382384 to 75382395 11 + TSS region transcription start site region 161352
Fundc2 X 75382399 to 75396459 14060 + protein coding gene FUN14 domain containing 2
Tssr161353 X 75382407 to 75382430 23 + TSS region transcription start site region 161353
Cmc4 X 75404846 to 75416584 11738 - protein coding gene C-x(9)-C motif containing 4
Mtcp1 X 75410442 to 75416584 6142 - protein coding gene mature T cell proliferation 1
Cpgi22806 X 75416162 to 75416779 617 CpG island CpG island 22806
Tssr163663 X 75416294 to 75416327 33 - TSS region transcription start site region 163663
Tssr5638 X 75416370 to 75416416 46 - TSS region transcription start site region 5638
Tssr163664 X 75416510 to 75416528 18 - TSS region transcription start site region 163664
Tssr163665 X 75416533 to 75416555 22 - TSS region transcription start site region 163665
Tssr163666 X 75416562 to 75416591 29 - TSS region transcription start site region 163666
Brcc3 X 75416628 to 75454001 37373 + protein coding gene BRCA1/BRCA2-containing complex, subunit 3
Tssr161354 X 75416637 to 75416649 12 + TSS region transcription start site region 161354
Tssr161355 X 75416669 to 75416722 53 + TSS region transcription start site region 161355
Gm15379 X 75458812 to 75459456 644 + pseudogene predicted gene 15379
Gm15385 X 75459963 to 75485753 25790 + pseudogene predicted gene 15385
Gm8666 X 75475232 to 75475523 291 - pseudogene predicted gene 8666
Cpgi22807 X 75475403 to 75475661 258 CpG island CpG island 22807
Tssr163667 X 75475629 to 75475663 34 - TSS region transcription start site region 163667
Vbp1 X 75514299 to 75534942 20643 + protein coding gene von Hippel-Lindau binding protein 1
Tssr161356 X 75514302 to 75514316 14 + TSS region transcription start site region 161356
Tssr161357 X 75514318 to 75514340 22 + TSS region transcription start site region 161357
Gm15384 X 75551117 to 75551824 707 + antisense lncRNA gene predicted gene 15384
Gm39522 X 75561475 to 75565216 3741 - lncRNA gene predicted gene, 39522
Rab39b X 75572046 to 75578231 6185 - protein coding gene RAB39B, member RAS oncogene family
Gm15063 X 75573452 to 75575268 1816 + antisense lncRNA gene predicted gene 15063
Cpgi22808 X 75577897 to 75578181 284 CpG island CpG island 22808
Tssr163668 X 75578188 to 75578247 59 - TSS region transcription start site region 163668
Gm25421 X 75578808 to 75578971 163 - snRNA gene predicted gene, 25421
Tssr161358 X 75668104 to 75668116 12 + TSS region transcription start site region 161358
Tssr163669 X 75673329 to 75673350 21 - TSS region transcription start site region 163669
Gm15065 X 75705409 to 75705681 272 + pseudogene predicted gene 15065
Gm7153 X 75723672 to 75724126 454 + pseudogene predicted gene 7153
4933407K13Rik X 75725458 to 75764699 39241 - lncRNA gene RIKEN cDNA 4933407K13 gene
Hdlq108 X 75728354 to 75728354 0 QTL HDL QTL 108
Tssr163670 X 75764636 to 75764654 18 - TSS region transcription start site region 163670
Tssr163671 X 75764662 to 75764708 46 - TSS region transcription start site region 163671
Pls3 X 75785654 to 75875178 89524 - protein coding gene plastin 3 (T-isoform)
Tssr163672 X 75842250 to 75842256 6 - TSS region transcription start site region 163672
Tssr163673 X 75842946 to 75842963 17 - TSS region transcription start site region 163673
Tssr163674 X 75842974 to 75842993 19 - TSS region transcription start site region 163674
Tssr163675 X 75843016 to 75843025 9 - TSS region transcription start site region 163675
Tssr163676 X 75843128 to 75843139 11 - TSS region transcription start site region 163676
Tssr163677 X 75843161 to 75843175 14 - TSS region transcription start site region 163677
Tssr163678 X 75843189 to 75843198 9 - TSS region transcription start site region 163678
Tssr163679 X 75843222 to 75843236 14 - TSS region transcription start site region 163679
Tssr163680 X 75843241 to 75843264 23 - TSS region transcription start site region 163680
Tssr163681 X 75874522 to 75874533 11 - TSS region transcription start site region 163681
Tssr163682 X 75874536 to 75874590 54 - TSS region transcription start site region 163682
Tssr163683 X 75875101 to 75875151 50 - TSS region transcription start site region 163683
Gm23320 X 75886083 to 75886209 126 + snoRNA gene predicted gene, 23320
Tssr161359 X 75915104 to 75915112 8 + TSS region transcription start site region 161359
Oat-rs1 X 75915216 to 75916526 1310 + pseudogene ornithine aminotransferase related sequence 1
Gm14715 X 75916131 to 75930227 14096 - lincRNA gene predicted gene 14715
Gm21025 X 75965830 to 75967250 1420 + pseudogene predicted gene, 21025
Cpgi22809 X 75966291 to 75966839 548 CpG island CpG island 22809
Gm7155 X 75971453 to 75973123 1670 - pseudogene predicted gene 7155
Gm8692 X 75987178 to 75987615 437 - pseudogene predicted gene 8692
Tssr163684 X 75987629 to 75987638 9 - TSS region transcription start site region 163684
Tssr163685 X 76129029 to 76129071 42 - TSS region transcription start site region 163685
Gm14710 X 76153331 to 76162605 9274 - pseudogene predicted gene 14710
Gm5397 X 76196108 to 76198742 2634 + pseudogene predicted gene 5397
Gm14711 X 76227109 to 76228230 1121 + pseudogene predicted gene 14711
Gm14707 X 76243690 to 76244272 582 - antisense lncRNA gene predicted gene 14707
Gm14717 X 76246984 to 76261392 14408 - antisense lncRNA gene predicted gene 14717
Tssr161360 X 76264281 to 76264312 31 + TSS region transcription start site region 161360
Cldn34b3 X 76264306 to 76267673 3367 + protein coding gene claudin 34B3
Gm41896 X 76273647 to 76275280 1633 + lncRNA gene predicted gene, 41896
Gm14712 X 76301183 to 76301954 771 - pseudogene predicted gene 14712
Tssr163686 X 76301682 to 76301693 11 - TSS region transcription start site region 163686
Magea7-ps X 76347393 to 76347635 242 + pseudogene melanoma antigen, family A, 7, pseudogene
Gm14709 X 76356827 to 76357130 303 + pseudogene predicted gene 14709
Tssr161361 X 76385331 to 76385339 8 + TSS region transcription start site region 161361
Cldn34b4 X 76393350 to 76397979 4629 + protein coding gene claudin 34B4
Tssr161362 X 76393361 to 76393372 11 + TSS region transcription start site region 161362
Gm5793 X 76538909 to 76539538 629 - pseudogene predicted pseudogene 5793
Cldn34d X 76582610 to 76602924 20314 - protein coding gene claudin 34D
Tssr163687 X 76602896 to 76602945 49 - TSS region transcription start site region 163687
Gm14716 X 76631434 to 76632151 717 + pseudogene predicted gene 14716
Tssr163688 X 76664611 to 76664613 2 - TSS region transcription start site region 163688
Gm14713 X 76737639 to 76738818 1179 + pseudogene predicted gene 14713
Gm26041 X 76788422 to 76788529 107 - rRNA gene predicted gene, 26041
Gm23280 X 76830034 to 76830172 138 + snoRNA gene predicted gene, 23280
Gm14706 X 76919856 to 76920110 254 - pseudogene predicted gene 14706
Gm14714 X 76980706 to 76981144 438 + pseudogene predicted gene 14714
DXMit45 X 77080730 to 77080865 135 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 45
Gm5398 X 77289832 to 77290815 983 - pseudogene predicted gene 5398
Gm5757 X 77292661 to 77293188 527 + pseudogene predicted gene 5757
5830424K16Rik X 77342329 to 77343999 1670 unclassified gene RIKEN cDNA 5830424K16 gene
Tssr161363 X 77368073 to 77368074 1 + TSS region transcription start site region 161363
Gm5937 X 77456586 to 77457228 642 + pseudogene predicted gene 5937
Cpgi22810 X 77510684 to 77512021 1337 CpG island CpG island 22810
Tssr161364 X 77510877 to 77510897 20 + TSS region transcription start site region 161364
Tssr161365 X 77510909 to 77510926 17 + TSS region transcription start site region 161365
Tssr161366 X 77511002 to 77511100 98 + TSS region transcription start site region 161366
Tbl1x X 77511013 to 77662983 151970 + protein coding gene transducin (beta)-like 1 X-linked
Tssr161367 X 77511101 to 77511137 36 + TSS region transcription start site region 161367
Tssr161368 X 77511222 to 77511229 7 + TSS region transcription start site region 161368
Tssr161369 X 77511241 to 77511250 9 + TSS region transcription start site region 161369
Tssr163689 X 77511807 to 77511821 14 - TSS region transcription start site region 163689
Tssr5639 X 77534282 to 77534284 2 + TSS region transcription start site region 5639
Gm23121 X 77579487 to 77579659 172 + snRNA gene predicted gene, 23121
Cldn34-ps X 77674836 to 77675435 599 - pseudogene claudin 34, pseudogene
Gct4 X 103019114 to 77080730 -25938384 QTL granulosa cell tumorigenesis 4