Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:74336628-76534001

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxna3 X 74329066 to 74344689 15623 + protein coding gene plexin A3
Lage3 X 74352162 to 74353618 1456 - protein coding gene L antigen family, member 3
Tssr163633 X 74353576 to 74353622 46 - TSS region transcription start site region 163633
Ubl4a X 74365718 to 74368548 2830 - protein coding gene ubiquitin-like 4A
Gm44504 X 74367447 to 74373349 5902 - protein coding gene predicted readthrough transcript (NMD candidate), 44504
Cpgi22798 X 74368080 to 74368815 735 CpG island CpG island 22798
Tssr163634 X 74368472 to 74368543 71 - TSS region transcription start site region 163634
Tssr163635 X 74368547 to 74368571 24 - TSS region transcription start site region 163635
Slc10a3 X 74369217 to 74373349 4132 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 3
Cpgi22799 X 74373069 to 74373289 220 CpG island CpG island 22799
Tssr163636 X 74373235 to 74373249 14 - TSS region transcription start site region 163636
Tssr163637 X 74373260 to 74373309 49 - TSS region transcription start site region 163637
Fam3a X 74384719 to 74393272 8553 - protein coding gene family with sequence similarity 3, member A
Tssr163638 X 74392775 to 74392806 31 - TSS region transcription start site region 163638
Cpgi22800 X 74392958 to 74393265 307 CpG island CpG island 22800
Tssr163639 X 74393016 to 74393072 56 - TSS region transcription start site region 163639
Tssr163640 X 74393109 to 74393176 67 - TSS region transcription start site region 163640
Tssr163641 X 74393180 to 74393200 20 - TSS region transcription start site region 163641
Tssr163642 X 74393211 to 74393267 56 - TSS region transcription start site region 163642
Ikbkg X 74393290 to 74453854 60564 + protein coding gene inhibitor of kappaB kinase gamma
G6pdx X 74409486 to 74429161 19675 - protein coding gene glucose-6-phosphate dehydrogenase X-linked
Tssr163643 X 74410216 to 74410233 17 - TSS region transcription start site region 163643
Tssr163644 X 74410988 to 74410996 8 - TSS region transcription start site region 163644
Tssr161343 X 74424595 to 74424629 34 + TSS region transcription start site region 161343
Tssr161344 X 74424632 to 74424671 39 + TSS region transcription start site region 161344
Tssr163645 X 74425292 to 74425319 27 - TSS region transcription start site region 163645
Tssr161345 X 74425457 to 74425477 20 + TSS region transcription start site region 161345
Cpgi22801 X 74428724 to 74429284 560 CpG island CpG island 22801
Tssr163646 X 74428871 to 74428887 16 - TSS region transcription start site region 163646
Tssr163647 X 74428911 to 74428922 11 - TSS region transcription start site region 163647
Tssr161346 X 74429678 to 74429716 38 + TSS region transcription start site region 161346
Tssr161347 X 74448512 to 74448517 5 + TSS region transcription start site region 161347
Tssr161348 X 74449701 to 74449712 11 + TSS region transcription start site region 161348
Gm6880 X 74480287 to 74481399 1112 - protein coding gene predicted gene 6880
Gm6881 X 74486589 to 74487421 832 + pseudogene predicted gene 6881
Gm15361 X 74494379 to 74494822 443 - pseudogene predicted pseudogene 15361
Tssr163648 X 74494965 to 74494980 15 - TSS region transcription start site region 163648
Gm15362 X 74504015 to 74504395 380 + pseudogene predicted gene 15362
Gm15364 X 74510946 to 74511530 584 + pseudogene predicted gene 15364
Gm26125 X 74534285 to 74534391 106 + snRNA gene predicted gene, 26125
Gm4989 X 74566958 to 74567703 745 + pseudogene predicted pseudogene 4989
Olfr1326-ps1 X 74570639 to 74571400 761 - pseudogene olfactory receptor 1326, pseudogene 1
Olfr1325 X 74594328 to 74595275 947 + protein coding gene olfactory receptor 1325
Gm26417 X 74624426 to 74624560 134 + snoRNA gene predicted gene, 26417
Gm5640 X 74639119 to 74645635 6516 - protein coding gene predicted gene 5640
Xlr5d-ps X 74652679 to 74659486 6807 + pseudogene X-linked lymphocyte-regulated 5D, pseudogene
Spin2-ps2 X 74677268 to 74678045 777 - pseudogene spindlin family, member 2, pseudogene 2
Xlr3d-ps X 74696047 to 74704076 8029 + pseudogene X-linked lymphocyte-regulated 3D, pseudogene
Gm15365 X 74713502 to 74713801 299 - pseudogene predicted gene 15365
Gm22351 X 74713767 to 74713873 106 - snRNA gene predicted gene, 22351
Gm38474 X 74726307 to 74728075 1768 + lncRNA gene predicted gene, 38474
Xlr4d-ps X 74730687 to 74733950 3263 + pseudogene X-linked lymphocyte-regulated 4D, pseudogene
DXMit146b X 74736599 to 74736726 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 146b
Gm6890 X 74740927 to 74742188 1261 + protein coding gene predicted gene 6890
Gm14755 X 74758539 to 74758922 383 - pseudogene predicted gene 14755
Olfr1327-ps1 X 74762045 to 74762879 834 - pseudogene olfactory receptor 1327, pseudogene 1
Gm14758 X 74775685 to 74775822 137 - pseudogene predicted gene 14758
Gm14695 X 74783672 to 74786540 2868 + pseudogene predicted gene 14695
DXMit145 X 74784311 to 74784468 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 145
DXMit145.1 X 74784397 to 74784515 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 145.1
Gm8617 X 74789937 to 74792158 2221 - pseudogene predicted gene 8617
Spin2-ps3 X 74804799 to 74805560 761 + pseudogene spindlin family, member 2, pseudogene 3
Xlr5e-ps X 74823336 to 74830149 6813 - pseudogene X-linked lymphocyte-regulated 5E, pseudogene
Gm5936 X 74837196 to 74843355 6159 + protein coding gene predicted gene 5936
Gm14694 X 74846561 to 74849438 2877 - pseudogene predicted gene 14694
Gm39521 X 74856438 to 74860177 3739 - lncRNA gene predicted gene, 39521
Gm6897 X 74860878 to 74861015 137 + pseudogene predicted pseudogene 6897
Gm14756 X 74872196 to 74872435 239 - pseudogene predicted gene 14756
Spin2-ps4 X 74889663 to 74890424 761 - pseudogene spindlin family, member 2, pseudogene 4
Xlr3e-ps X 74912417 to 74920320 7903 + pseudogene X-linked lymphocyte-regulated 3E, pseudogene
Xlr4e-ps X 74944963 to 74952044 7081 + pseudogene X-linked lymphocyte-regulated 4E, pseudogene
Gm15363 X 74958531 to 74959647 1116 + pseudogene predicted gene 15363
Gm38425 X 74966844 to 74969125 2281 - protein coding gene predicted gene, 38425
Gab3 X 74988545 to 75084905 96360 - protein coding gene growth factor receptor bound protein 2-associated protein 3
Gm25629 X 74997577 to 74997683 106 - snRNA gene predicted gene, 25629
Gm15367 X 75010590 to 75011605 1015 + pseudogene predicted gene 15367
Tssr163649 X 75035294 to 75035316 22 - TSS region transcription start site region 163649
Tssr163650 X 75082319 to 75082322 3 - TSS region transcription start site region 163650
Tssr163651 X 75084899 to 75084946 47 - TSS region transcription start site region 163651
Cpgi22802 X 75095825 to 75096310 485 CpG island CpG island 22802
Dkc1 X 75095854 to 75109777 13923 + protein coding gene dyskeratosis congenita 1, dyskerin
Tssr161349 X 75095885 to 75095922 37 + TSS region transcription start site region 161349
Tssr161350 X 75096039 to 75096109 70 + TSS region transcription start site region 161350
Gm25520 X 75101409 to 75101526 117 + snoRNA gene predicted gene, 25520
Mpp1 X 75109733 to 75131016 21283 - protein coding gene membrane protein, palmitoylated
Tssr163652 X 75110601 to 75110638 37 - TSS region transcription start site region 163652
Tssr163653 X 75111991 to 75112011 20 - TSS region transcription start site region 163653
Tssr163654 X 75113642 to 75113660 18 - TSS region transcription start site region 163654
Tssr163655 X 75114665 to 75114675 10 - TSS region transcription start site region 163655
Tssr163656 X 75126962 to 75126971 9 - TSS region transcription start site region 163656
Tssr161351 X 75127119 to 75127131 12 + TSS region transcription start site region 161351
Cpgi22803 X 75130663 to 75131134 471 CpG island CpG island 22803
Tssr163657 X 75130892 to 75130905 13 - TSS region transcription start site region 163657
Tssr163658 X 75130914 to 75130994 80 - TSS region transcription start site region 163658
Tssr163659 X 75130996 to 75131009 13 - TSS region transcription start site region 163659
Cpgi22804 X 75143210 to 75143483 273 CpG island CpG island 22804
Gm15378 X 75143424 to 75143630 206 + pseudogene predicted gene 15378
Fam220-ps X 75143688 to 75144470 782 + pseudogene family with sequence similarity 220, pseudogene
Smim9 X 75146057 to 75163756 17699 - protein coding gene small integral membrane protein 9
Cpgi22805 X 75155652 to 75155878 226 CpG island CpG island 22805
Gm8503 X 75155819 to 75156273 454 + pseudogene predicted gene 8503
F8 X 75172715 to 75382615 209900 - protein coding gene coagulation factor VIII
Gm6039 X 75233063 to 75234312 1249 + pseudogene predicted gene 6039
Tssr164733 X 75233447 to 75233466 19 + TSS region transcription start site region 164733
Gm8522 X 75271010 to 75272938 1928 - pseudogene predicted gene 8522
Tssr163660 X 75272956 to 75272972 16 - TSS region transcription start site region 163660
Tssr163661 X 75379786 to 75379791 5 - TSS region transcription start site region 163661
Tssr163662 X 75379795 to 75379823 28 - TSS region transcription start site region 163662
Tssr161352 X 75382384 to 75382395 11 + TSS region transcription start site region 161352
Fundc2 X 75382399 to 75396459 14060 + protein coding gene FUN14 domain containing 2
Tssr161353 X 75382407 to 75382430 23 + TSS region transcription start site region 161353
Cmc4 X 75404846 to 75416584 11738 - protein coding gene C-x(9)-C motif containing 4
Mtcp1 X 75410442 to 75416584 6142 - protein coding gene mature T cell proliferation 1
Cpgi22806 X 75416162 to 75416779 617 CpG island CpG island 22806
Tssr163663 X 75416294 to 75416327 33 - TSS region transcription start site region 163663
Tssr5638 X 75416370 to 75416416 46 - TSS region transcription start site region 5638
Tssr163664 X 75416510 to 75416528 18 - TSS region transcription start site region 163664
Tssr163665 X 75416533 to 75416555 22 - TSS region transcription start site region 163665
Tssr163666 X 75416562 to 75416591 29 - TSS region transcription start site region 163666
Brcc3 X 75416628 to 75454001 37373 + protein coding gene BRCA1/BRCA2-containing complex, subunit 3
Tssr161354 X 75416637 to 75416649 12 + TSS region transcription start site region 161354
Tssr161355 X 75416669 to 75416722 53 + TSS region transcription start site region 161355
Gm15379 X 75458812 to 75459456 644 + pseudogene predicted gene 15379
Gm15385 X 75459963 to 75485753 25790 + pseudogene predicted gene 15385
Gm8666 X 75475232 to 75475523 291 - pseudogene predicted gene 8666
Cpgi22807 X 75475403 to 75475661 258 CpG island CpG island 22807
Tssr163667 X 75475629 to 75475663 34 - TSS region transcription start site region 163667
Vbp1 X 75514299 to 75534942 20643 + protein coding gene von Hippel-Lindau binding protein 1
Tssr161356 X 75514302 to 75514316 14 + TSS region transcription start site region 161356
Tssr161357 X 75514318 to 75514340 22 + TSS region transcription start site region 161357
Gm15384 X 75551117 to 75551824 707 + antisense lncRNA gene predicted gene 15384
Gm39522 X 75561475 to 75565216 3741 - lncRNA gene predicted gene, 39522
Rab39b X 75572046 to 75578231 6185 - protein coding gene RAB39B, member RAS oncogene family
Gm15063 X 75573452 to 75575268 1816 + antisense lncRNA gene predicted gene 15063
Cpgi22808 X 75577897 to 75578181 284 CpG island CpG island 22808
Tssr163668 X 75578188 to 75578247 59 - TSS region transcription start site region 163668
Gm25421 X 75578808 to 75578971 163 - snRNA gene predicted gene, 25421
Tssr161358 X 75668104 to 75668116 12 + TSS region transcription start site region 161358
Tssr163669 X 75673329 to 75673350 21 - TSS region transcription start site region 163669
Gm15065 X 75705409 to 75705681 272 + pseudogene predicted gene 15065
Gm7153 X 75723672 to 75724126 454 + pseudogene predicted gene 7153
4933407K13Rik X 75725458 to 75764699 39241 - lncRNA gene RIKEN cDNA 4933407K13 gene
Hdlq108 X 75728354 to 75728354 0 QTL HDL QTL 108
Tssr163670 X 75764636 to 75764654 18 - TSS region transcription start site region 163670
Tssr163671 X 75764662 to 75764708 46 - TSS region transcription start site region 163671
Pls3 X 75785654 to 75875178 89524 - protein coding gene plastin 3 (T-isoform)
Tssr163672 X 75842250 to 75842256 6 - TSS region transcription start site region 163672
Tssr163673 X 75842946 to 75842963 17 - TSS region transcription start site region 163673
Tssr163674 X 75842974 to 75842993 19 - TSS region transcription start site region 163674
Tssr163675 X 75843016 to 75843025 9 - TSS region transcription start site region 163675
Tssr163676 X 75843128 to 75843139 11 - TSS region transcription start site region 163676
Tssr163677 X 75843161 to 75843175 14 - TSS region transcription start site region 163677
Tssr163678 X 75843189 to 75843198 9 - TSS region transcription start site region 163678
Tssr163679 X 75843222 to 75843236 14 - TSS region transcription start site region 163679
Tssr163680 X 75843241 to 75843264 23 - TSS region transcription start site region 163680
Tssr163681 X 75874522 to 75874533 11 - TSS region transcription start site region 163681
Tssr163682 X 75874536 to 75874590 54 - TSS region transcription start site region 163682
Tssr163683 X 75875101 to 75875151 50 - TSS region transcription start site region 163683
Gm23320 X 75886083 to 75886209 126 + snoRNA gene predicted gene, 23320
Tssr161359 X 75915104 to 75915112 8 + TSS region transcription start site region 161359
Oat-rs1 X 75915216 to 75916526 1310 + pseudogene ornithine aminotransferase related sequence 1
Gm14715 X 75916131 to 75930227 14096 - lincRNA gene predicted gene 14715
Gm21025 X 75965830 to 75967250 1420 + pseudogene predicted gene, 21025
Cpgi22809 X 75966291 to 75966839 548 CpG island CpG island 22809
Gm7155 X 75971453 to 75973123 1670 - pseudogene predicted gene 7155
Gm8692 X 75987178 to 75987615 437 - pseudogene predicted gene 8692
Tssr163684 X 75987629 to 75987638 9 - TSS region transcription start site region 163684
Tssr163685 X 76129029 to 76129071 42 - TSS region transcription start site region 163685
Gm14710 X 76153331 to 76162605 9274 - pseudogene predicted gene 14710
Gm5397 X 76196108 to 76198742 2634 + pseudogene predicted gene 5397
Gm14711 X 76227109 to 76228230 1121 + pseudogene predicted gene 14711
Gm14707 X 76243690 to 76244272 582 - antisense lncRNA gene predicted gene 14707
Gm14717 X 76246984 to 76261392 14408 - antisense lncRNA gene predicted gene 14717
Tssr161360 X 76264281 to 76264312 31 + TSS region transcription start site region 161360
Cldn34b3 X 76264306 to 76267673 3367 + protein coding gene claudin 34B3
Gm41896 X 76273647 to 76275280 1633 + lncRNA gene predicted gene, 41896
Gm14712 X 76301183 to 76301954 771 - pseudogene predicted gene 14712
Tssr163686 X 76301682 to 76301693 11 - TSS region transcription start site region 163686
Magea7-ps X 76347393 to 76347635 242 + pseudogene melanoma antigen, family A, 7, pseudogene
Gm14709 X 76356827 to 76357130 303 + pseudogene predicted gene 14709
Tssr161361 X 76385331 to 76385339 8 + TSS region transcription start site region 161361
Cldn34b4 X 76393350 to 76397979 4629 + protein coding gene claudin 34B4
Tssr161362 X 76393361 to 76393372 11 + TSS region transcription start site region 161362