Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:73958235-74788249

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hcfc1 X 73942792 to 73966357 23565 - protein coding gene host cell factor C1
Cpgi22786 X 73965827 to 73966134 307 CpG island CpG island 22786
Tssr163605 X 73965994 to 73966044 50 - TSS region transcription start site region 163605
Tssr163606 X 73966329 to 73966376 47 - TSS region transcription start site region 163606
Cpgi22787 X 73966460 to 73967874 1414 CpG island CpG island 22787
Tssr161303 X 73966485 to 73966506 21 + TSS region transcription start site region 161303
Tssr163607 X 73966750 to 73966753 3 - TSS region transcription start site region 163607
Tssr163608 X 73966973 to 73967008 35 - TSS region transcription start site region 163608
Gm8545 X 74006702 to 74007502 800 + pseudogene predicted gene 8545
Irak1 X 74013914 to 74023918 10004 - protein coding gene interleukin-1 receptor-associated kinase 1
Tssr163609 X 74014903 to 74014917 14 - TSS region transcription start site region 163609
Cpgi22788 X 74023301 to 74024369 1068 CpG island CpG island 22788
Mir5132 X 74023528 to 74023598 70 - miRNA gene microRNA 5132
Tssr163610 X 74023797 to 74023808 11 - TSS region transcription start site region 163610
Tssr163611 X 74023817 to 74023839 22 - TSS region transcription start site region 163611
Mir718 X 74023849 to 74023936 87 - miRNA gene microRNA 718
Tssr163612 X 74023908 to 74023917 9 - TSS region transcription start site region 163612
Mecp2 X 74026592 to 74085690 59098 - protein coding gene methyl CpG binding protein 2
Tssr161304 X 74027339 to 74027340 1 + TSS region transcription start site region 161304
Tssr163613 X 74059366 to 74059370 4 - TSS region transcription start site region 163613
Tssr163614 X 74073485 to 74073489 4 - TSS region transcription start site region 163614
Tssr163615 X 74074898 to 74074936 38 - TSS region transcription start site region 163615
Cpgi22789 X 74084703 to 74085866 1163 CpG island CpG island 22789
Tssr163616 X 74085340 to 74085357 17 - TSS region transcription start site region 163616
Tssr5637 X 74085554 to 74085563 9 - TSS region transcription start site region 5637
Tssr163617 X 74085586 to 74085652 66 - TSS region transcription start site region 163617
Tssr163618 X 74085656 to 74085672 16 - TSS region transcription start site region 163618
Tssr161305 X 74127463 to 74127469 6 + TSS region transcription start site region 161305
Opn1mw X 74127466 to 74150756 23290 + protein coding gene opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
Gm6758 X 74135133 to 74136187 1054 - pseudogene predicted gene 6758
Tex28 X 74150944 to 74167838 16894 - protein coding gene testis expressed 28
Rpl3-ps2 X 74170653 to 74171866 1213 + pseudogene ribosomal protein L3, pseudogene 2
Tssr161306 X 74177225 to 74177236 11 + TSS region transcription start site region 161306
Tssr161307 X 74177252 to 74177268 16 + TSS region transcription start site region 161307
Tktl1 X 74177259 to 74208498 31239 + protein coding gene transketolase-like 1
Tssr161308 X 74202412 to 74202420 8 + TSS region transcription start site region 161308
Tssr161309 X 74204914 to 74204926 12 + TSS region transcription start site region 161309
Flna X 74223461 to 74249820 26359 - protein coding gene filamin, alpha
Tssr163619 X 74224789 to 74224820 31 - TSS region transcription start site region 163619
Tssr163620 X 74229187 to 74229191 4 - TSS region transcription start site region 163620
Tssr163621 X 74241271 to 74241290 19 - TSS region transcription start site region 163621
Tssr163622 X 74244028 to 74244037 9 - TSS region transcription start site region 163622
Tssr163623 X 74244044 to 74244061 17 - TSS region transcription start site region 163623
Tssr163624 X 74245737 to 74245769 32 - TSS region transcription start site region 163624
Cpgi22790 X 74245803 to 74246594 791 CpG island CpG island 22790
Tssr163625 X 74246400 to 74246438 38 - TSS region transcription start site region 163625
Tssr163626 X 74246535 to 74246556 21 - TSS region transcription start site region 163626
Cpgi22791 X 74249641 to 74250155 514 CpG island CpG island 22791
Tssr163627 X 74249819 to 74249840 21 - TSS region transcription start site region 163627
Cpgi22792 X 74254496 to 74255275 779 CpG island CpG island 22792
Tssr161310 X 74254679 to 74254726 47 + TSS region transcription start site region 161310
Emd X 74254687 to 74261548 6861 + protein coding gene emerin
Tssr161311 X 74254736 to 74254750 14 + TSS region transcription start site region 161311
Tssr161312 X 74254782 to 74254872 90 + TSS region transcription start site region 161312
Tssr161313 X 74254877 to 74254888 11 + TSS region transcription start site region 161313
Tssr161314 X 74255051 to 74255062 11 + TSS region transcription start site region 161314
Tssr161315 X 74255174 to 74255185 11 + TSS region transcription start site region 161315
Tssr161316 X 74255263 to 74255277 14 + TSS region transcription start site region 161316
Tssr161317 X 74257417 to 74257446 29 + TSS region transcription start site region 161317
Tssr161318 X 74260889 to 74260895 6 + TSS region transcription start site region 161318
Gm14686 X 74261032 to 74261374 342 + pseudogene predicted gene 14686
Rpl10 X 74270816 to 74273135 2319 + protein coding gene ribosomal protein L10
Tssr161319 X 74270849 to 74270870 21 + TSS region transcription start site region 161319
Tssr161320 X 74271396 to 74271509 113 + TSS region transcription start site region 161320
Snora70 X 74272492 to 74272620 128 + snoRNA gene small nucleolar RNA, H/ACA box 70
Dnase1l1 X 74273217 to 74282333 9116 - protein coding gene deoxyribonuclease 1-like 1
Mir7091 X 74274027 to 74274105 78 - miRNA gene microRNA 7091
Tssr163628 X 74274915 to 74274947 32 - TSS region transcription start site region 163628
Tssr163629 X 74275014 to 74275059 45 - TSS region transcription start site region 163629
Gm14846 X 74278654 to 74278869 215 + pseudogene predicted gene 14846
Tssr163630 X 74281612 to 74281655 43 - TSS region transcription start site region 163630
Tssr163631 X 74281707 to 74281737 30 - TSS region transcription start site region 163631
Tssr161321 X 74281893 to 74281924 31 + TSS region transcription start site region 161321
Taz X 74281912 to 74290151 8239 + protein coding gene tafazzin
Cpgi22793 X 74282514 to 74282843 329 CpG island CpG island 22793
Tssr161322 X 74282722 to 74282770 48 + TSS region transcription start site region 161322
Tssr161323 X 74282778 to 74282812 34 + TSS region transcription start site region 161323
B230340J04Rik X 74291022 to 74295316 4294 unclassified gene RIKEN cDNA B230340J04 gene
Cpgi22794 X 74296905 to 74297488 583 CpG island CpG island 22794
Atp6ap1 X 74297097 to 74304721 7624 + protein coding gene ATPase, H+ transporting, lysosomal accessory protein 1
Tssr161324 X 74297120 to 74297178 58 + TSS region transcription start site region 161324
Tssr161325 X 74299956 to 74299960 4 + TSS region transcription start site region 161325
Tssr161326 X 74302386 to 74302401 15 + TSS region transcription start site region 161326
Tssr161327 X 74303816 to 74303833 17 + TSS region transcription start site region 161327
Tssr161328 X 74303844 to 74303888 44 + TSS region transcription start site region 161328
Tssr161329 X 74303938 to 74303984 46 + TSS region transcription start site region 161329
Tssr161330 X 74304025 to 74304036 11 + TSS region transcription start site region 161330
Tssr161331 X 74304160 to 74304171 11 + TSS region transcription start site region 161331
Tssr161332 X 74304172 to 74304191 19 + TSS region transcription start site region 161332
Tssr163632 X 74304687 to 74304691 4 - TSS region transcription start site region 163632
Cpgi22795 X 74304921 to 74305584 663 CpG island CpG island 22795
Tssr161333 X 74304992 to 74305036 44 + TSS region transcription start site region 161333
Gdi1 X 74305012 to 74311867 6855 + protein coding gene guanosine diphosphate (GDP) dissociation inhibitor 1
Tssr161334 X 74305092 to 74305106 14 + TSS region transcription start site region 161334
Tssr161335 X 74305239 to 74305278 39 + TSS region transcription start site region 161335
Tssr161336 X 74307183 to 74307196 13 + TSS region transcription start site region 161336
Tssr161337 X 74309089 to 74309105 16 + TSS region transcription start site region 161337
Tssr161338 X 74309952 to 74309972 20 + TSS region transcription start site region 161338
Tssr161339 X 74311006 to 74311019 13 + TSS region transcription start site region 161339
Cpgi22796 X 74312827 to 74313576 749 CpG island CpG island 22796
Tssr161340 X 74313014 to 74313109 95 + TSS region transcription start site region 161340
Fam50a X 74313033 to 74320149 7116 + protein coding gene family with sequence similarity 50, member A
Tssr161341 X 74313242 to 74313253 11 + TSS region transcription start site region 161341
Mir7092 X 74317362 to 74317429 67 + miRNA gene microRNA 7092
Gm39520 X 74319203 to 74328949 9746 - lncRNA gene predicted gene, 39520
Tssr161342 X 74329058 to 74329076 18 + TSS region transcription start site region 161342
Plxna3 X 74329066 to 74344689 15623 + protein coding gene plexin A3
Cpgi22797 X 74329083 to 74329292 209 CpG island CpG island 22797
Lage3 X 74352162 to 74353618 1456 - protein coding gene L antigen family, member 3
Tssr163633 X 74353576 to 74353622 46 - TSS region transcription start site region 163633
Ubl4a X 74365718 to 74368548 2830 - protein coding gene ubiquitin-like 4A
Gm44504 X 74367447 to 74373349 5902 - protein coding gene predicted readthrough transcript (NMD candidate), 44504
Cpgi22798 X 74368080 to 74368815 735 CpG island CpG island 22798
Tssr163634 X 74368472 to 74368543 71 - TSS region transcription start site region 163634
Tssr163635 X 74368547 to 74368571 24 - TSS region transcription start site region 163635
Slc10a3 X 74369217 to 74373349 4132 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 3
Cpgi22799 X 74373069 to 74373289 220 CpG island CpG island 22799
Tssr163636 X 74373235 to 74373249 14 - TSS region transcription start site region 163636
Tssr163637 X 74373260 to 74373309 49 - TSS region transcription start site region 163637
Fam3a X 74384719 to 74393272 8553 - protein coding gene family with sequence similarity 3, member A
Tssr163638 X 74392775 to 74392806 31 - TSS region transcription start site region 163638
Cpgi22800 X 74392958 to 74393265 307 CpG island CpG island 22800
Tssr163639 X 74393016 to 74393072 56 - TSS region transcription start site region 163639
Tssr163640 X 74393109 to 74393176 67 - TSS region transcription start site region 163640
Tssr163641 X 74393180 to 74393200 20 - TSS region transcription start site region 163641
Tssr163642 X 74393211 to 74393267 56 - TSS region transcription start site region 163642
Ikbkg X 74393290 to 74453854 60564 + protein coding gene inhibitor of kappaB kinase gamma
G6pdx X 74409486 to 74429161 19675 - protein coding gene glucose-6-phosphate dehydrogenase X-linked
Tssr163643 X 74410216 to 74410233 17 - TSS region transcription start site region 163643
Tssr163644 X 74410988 to 74410996 8 - TSS region transcription start site region 163644
Tssr161343 X 74424595 to 74424629 34 + TSS region transcription start site region 161343
Tssr161344 X 74424632 to 74424671 39 + TSS region transcription start site region 161344
Tssr163645 X 74425292 to 74425319 27 - TSS region transcription start site region 163645
Tssr161345 X 74425457 to 74425477 20 + TSS region transcription start site region 161345
Cpgi22801 X 74428724 to 74429284 560 CpG island CpG island 22801
Tssr163646 X 74428871 to 74428887 16 - TSS region transcription start site region 163646
Tssr163647 X 74428911 to 74428922 11 - TSS region transcription start site region 163647
Tssr161346 X 74429678 to 74429716 38 + TSS region transcription start site region 161346
Tssr161347 X 74448512 to 74448517 5 + TSS region transcription start site region 161347
Tssr161348 X 74449701 to 74449712 11 + TSS region transcription start site region 161348
Gm6880 X 74480287 to 74481399 1112 - protein coding gene predicted gene 6880
Gm6881 X 74486589 to 74487421 832 + pseudogene predicted gene 6881
Gm15361 X 74494379 to 74494822 443 - pseudogene predicted pseudogene 15361
Tssr163648 X 74494965 to 74494980 15 - TSS region transcription start site region 163648
Gm15362 X 74504015 to 74504395 380 + pseudogene predicted gene 15362
Gm15364 X 74510946 to 74511530 584 + pseudogene predicted gene 15364
Gm26125 X 74534285 to 74534391 106 + snRNA gene predicted gene, 26125
Gm4989 X 74566958 to 74567703 745 + pseudogene predicted pseudogene 4989
Olfr1326-ps1 X 74570639 to 74571400 761 - pseudogene olfactory receptor 1326, pseudogene 1
Olfr1325 X 74594328 to 74595275 947 + protein coding gene olfactory receptor 1325
Gm26417 X 74624426 to 74624560 134 + snoRNA gene predicted gene, 26417
Gm5640 X 74639119 to 74645635 6516 - protein coding gene predicted gene 5640
Xlr5d-ps X 74652679 to 74659486 6807 + pseudogene X-linked lymphocyte-regulated 5D, pseudogene
Spin2-ps2 X 74677268 to 74678045 777 - pseudogene spindlin family, member 2, pseudogene 2
Xlr3d-ps X 74696047 to 74704076 8029 + pseudogene X-linked lymphocyte-regulated 3D, pseudogene
Gm15365 X 74713502 to 74713801 299 - pseudogene predicted gene 15365
Gm22351 X 74713767 to 74713873 106 - snRNA gene predicted gene, 22351
Gm38474 X 74726307 to 74728075 1768 + lncRNA gene predicted gene, 38474
Xlr4d-ps X 74730687 to 74733950 3263 + pseudogene X-linked lymphocyte-regulated 4D, pseudogene
DXMit146b X 74736599 to 74736726 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 146b
Gm6890 X 74740927 to 74742188 1261 + protein coding gene predicted gene 6890
Gm14755 X 74758539 to 74758922 383 - pseudogene predicted gene 14755
Olfr1327-ps1 X 74762045 to 74762879 834 - pseudogene olfactory receptor 1327, pseudogene 1
Gm14758 X 74775685 to 74775822 137 - pseudogene predicted gene 14758
Gm14695 X 74783672 to 74786540 2868 + pseudogene predicted gene 14695
DXMit145 X 74784311 to 74784468 157 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 145
DXMit145.1 X 74784397 to 74784515 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 145.1