Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:73523129-73823135

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp2b3 X 73503086 to 73571005 67919 + protein coding gene ATPase, Ca++ transporting, plasma membrane 3
Tssr161257 X 73528677 to 73528711 34 + TSS region transcription start site region 161257
Tssr161258 X 73570404 to 73570416 12 + TSS region transcription start site region 161258
DXMit1004 X 73570530 to 73570649 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 1004
Gm9730 X 73578128 to 73584000 5872 - pseudogene predicted gene 9730
Tssr161259 X 73608458 to 73608461 3 + TSS region transcription start site region 161259
Gm46680 X 73624480 to 73636167 11687 - lncRNA gene predicted gene, 46680
Tssr161260 X 73635562 to 73635570 8 + TSS region transcription start site region 161260
Cpgi22772 X 73637204 to 73637566 362 CpG island CpG island 22772
Cpgi22773 X 73639232 to 73639748 516 CpG island CpG island 22773
Tssr161261 X 73639388 to 73639395 7 + TSS region transcription start site region 161261
Tssr161262 X 73639398 to 73639410 12 + TSS region transcription start site region 161262
Tssr161263 X 73639414 to 73639436 22 + TSS region transcription start site region 161263
Dusp9 X 73639419 to 73643514 4095 + protein coding gene dual specificity phosphatase 9
Tssr161264 X 73639439 to 73639442 3 + TSS region transcription start site region 161264
Cpgi22774 X 73639972 to 73640604 632 CpG island CpG island 22774
Tssr161265 X 73640117 to 73640129 12 + TSS region transcription start site region 161265
Tssr161266 X 73640161 to 73640172 11 + TSS region transcription start site region 161266
Tssr161267 X 73640178 to 73640186 8 + TSS region transcription start site region 161267
Tssr161268 X 73640370 to 73640377 7 + TSS region transcription start site region 161268
Tssr161269 X 73640751 to 73640782 31 + TSS region transcription start site region 161269
Tssr161270 X 73641450 to 73641462 12 + TSS region transcription start site region 161270
Pnck X 73655992 to 73660111 4119 - protein coding gene pregnancy upregulated non-ubiquitously expressed CaM kinase
Cpgi22775 X 73659668 to 73660309 641 CpG island CpG island 22775
Tssr163556 X 73659835 to 73659877 42 - TSS region transcription start site region 163556
Tssr163557 X 73660047 to 73660093 46 - TSS region transcription start site region 163557
Gm32261 X 73669001 to 73673049 4048 - lncRNA gene predicted gene, 32261
Cpgi22776 X 73672769 to 73674377 1608 CpG island CpG island 22776
Tssr163558 X 73673021 to 73673035 14 - TSS region transcription start site region 163558
Tssr161271 X 73673129 to 73673135 6 + TSS region transcription start site region 161271
Slc6a8 X 73673150 to 73682502 9352 + protein coding gene solute carrier family 6 (neurotransmitter transporter, creatine), member 8
Tssr161272 X 73673156 to 73673174 18 + TSS region transcription start site region 161272
Tssr161273 X 73675446 to 73675449 3 + TSS region transcription start site region 161273
Tssr161274 X 73675500 to 73675516 16 + TSS region transcription start site region 161274
Tssr161275 X 73675531 to 73675538 7 + TSS region transcription start site region 161275
Tssr161276 X 73675540 to 73675547 7 + TSS region transcription start site region 161276
Tssr161277 X 73676713 to 73676725 12 + TSS region transcription start site region 161277
Tssr161278 X 73681217 to 73681238 21 + TSS region transcription start site region 161278
Tssr161279 X 73681666 to 73681680 14 + TSS region transcription start site region 161279
Tssr161280 X 73681706 to 73681742 36 + TSS region transcription start site region 161280
Bcap31 X 73686178 to 73716175 29997 - protein coding gene B cell receptor associated protein 31
Tssr163559 X 73689581 to 73689623 42 - TSS region transcription start site region 163559
Tssr163560 X 73695244 to 73695247 3 - TSS region transcription start site region 163560
Tssr163561 X 73712522 to 73712543 21 - TSS region transcription start site region 163561
Cpgi22777 X 73716081 to 73716618 537 CpG island CpG island 22777
Tssr163562 X 73716145 to 73716187 42 - TSS region transcription start site region 163562
Tssr163563 X 73716198 to 73716209 11 - TSS region transcription start site region 163563
Tssr163564 X 73716442 to 73716466 24 - TSS region transcription start site region 163564
Tssr161281 X 73716577 to 73716618 41 + TSS region transcription start site region 161281
Abcd1 X 73716597 to 73738534 21937 + protein coding gene ATP-binding cassette, sub-family D (ALD), member 1
Tssr161282 X 73716712 to 73716750 38 + TSS region transcription start site region 161282
Tssr161283 X 73716753 to 73716779 26 + TSS region transcription start site region 161283
Tssr161284 X 73716786 to 73716799 13 + TSS region transcription start site region 161284
Tssr161285 X 73716939 to 73717064 125 + TSS region transcription start site region 161285
Cpgi22778 X 73717059 to 73717415 356 CpG island CpG island 22778
Tssr163565 X 73717830 to 73717842 12 - TSS region transcription start site region 163565
Tssr163566 X 73717850 to 73717864 14 - TSS region transcription start site region 163566
Tssr161286 X 73734101 to 73734128 27 + TSS region transcription start site region 161286
Tssr161287 X 73734564 to 73734575 11 + TSS region transcription start site region 161287
Tssr161288 X 73737789 to 73737806 17 + TSS region transcription start site region 161288
Tssr163567 X 73739239 to 73739245 6 - TSS region transcription start site region 163567
Gm25226 X 73752674 to 73752796 122 + snoRNA gene predicted gene, 25226
Tssr161289 X 73757044 to 73757061 17 + TSS region transcription start site region 161289
Tssr161290 X 73757069 to 73757111 42 + TSS region transcription start site region 161290
Plxnb3 X 73757090 to 73772514 15424 + protein coding gene plexin B3
Tssr161291 X 73765519 to 73765584 65 + TSS region transcription start site region 161291
Tssr161292 X 73774397 to 73774412 15 + TSS region transcription start site region 161292
Srpk3 X 73774405 to 73778925 4520 + protein coding gene serine/arginine-rich protein specific kinase 3
Tssr161293 X 73774423 to 73774434 11 + TSS region transcription start site region 161293
Tssr161294 X 73774436 to 73774454 18 + TSS region transcription start site region 161294
Idh3g X 73778963 to 73786897 7934 - protein coding gene isocitrate dehydrogenase 3 (NAD+), gamma
Tssr163568 X 73780105 to 73780126 21 - TSS region transcription start site region 163568
Tssr163569 X 73780260 to 73780282 22 - TSS region transcription start site region 163569
Tssr163570 X 73781784 to 73781792 8 - TSS region transcription start site region 163570
Tssr163571 X 73786593 to 73786626 33 - TSS region transcription start site region 163571
Cpgi22779 X 73786624 to 73787527 903 CpG island CpG island 22779
Tssr163572 X 73786852 to 73786871 19 - TSS region transcription start site region 163572
Tssr163573 X 73786888 to 73786899 11 - TSS region transcription start site region 163573
Tssr161295 X 73787002 to 73787017 15 + TSS region transcription start site region 161295
Ssr4 X 73787028 to 73790828 3800 + protein coding gene signal sequence receptor, delta
Tssr163574 X 73787033 to 73787059 26 - TSS region transcription start site region 163574
Tssr163575 X 73787079 to 73787098 19 - TSS region transcription start site region 163575
Tssr161296 X 73787092 to 73787101 9 + TSS region transcription start site region 161296
Tssr161297 X 73787108 to 73787115 7 + TSS region transcription start site region 161297
Tssr161298 X 73787126 to 73787131 5 + TSS region transcription start site region 161298
Tssr161299 X 73787133 to 73787198 65 + TSS region transcription start site region 161299
Tssr161300 X 73787203 to 73787230 27 + TSS region transcription start site region 161300
Pdzd4 X 73793359 to 73824969 31610 - protein coding gene PDZ domain containing 4
Cpgi22780 X 73794731 to 73794950 219 CpG island CpG island 22780
Gm14817 X 73795215 to 73797616 2401 + unclassified non-coding RNA gene predicted gene 14817
Tssr163576 X 73806212 to 73806219 7 - TSS region transcription start site region 163576
Gm23615 X 73809417 to 73809481 64 + snoRNA gene predicted gene, 23615