Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:73504582-74204603

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp2b3 X 73503086 to 73571005 67919 + protein coding gene ATPase, Ca++ transporting, plasma membrane 3
Tssr161255 X 73517280 to 73517304 24 + TSS region transcription start site region 161255
Tssr161256 X 73521091 to 73521117 26 + TSS region transcription start site region 161256
Tssr161257 X 73528677 to 73528711 34 + TSS region transcription start site region 161257
Tssr161258 X 73570404 to 73570416 12 + TSS region transcription start site region 161258
DXMit1004 X 73570530 to 73570649 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 1004
Gm9730 X 73578128 to 73584000 5872 - pseudogene predicted gene 9730
Tssr161259 X 73608458 to 73608461 3 + TSS region transcription start site region 161259
Gm46680 X 73624480 to 73636167 11687 - lncRNA gene predicted gene, 46680
Tssr161260 X 73635562 to 73635570 8 + TSS region transcription start site region 161260
Cpgi22772 X 73637204 to 73637566 362 CpG island CpG island 22772
Cpgi22773 X 73639232 to 73639748 516 CpG island CpG island 22773
Tssr161261 X 73639388 to 73639395 7 + TSS region transcription start site region 161261
Tssr161262 X 73639398 to 73639410 12 + TSS region transcription start site region 161262
Tssr161263 X 73639414 to 73639436 22 + TSS region transcription start site region 161263
Dusp9 X 73639419 to 73643514 4095 + protein coding gene dual specificity phosphatase 9
Tssr161264 X 73639439 to 73639442 3 + TSS region transcription start site region 161264
Cpgi22774 X 73639972 to 73640604 632 CpG island CpG island 22774
Tssr161265 X 73640117 to 73640129 12 + TSS region transcription start site region 161265
Tssr161266 X 73640161 to 73640172 11 + TSS region transcription start site region 161266
Tssr161267 X 73640178 to 73640186 8 + TSS region transcription start site region 161267
Tssr161268 X 73640370 to 73640377 7 + TSS region transcription start site region 161268
Tssr161269 X 73640751 to 73640782 31 + TSS region transcription start site region 161269
Tssr161270 X 73641450 to 73641462 12 + TSS region transcription start site region 161270
Pnck X 73655992 to 73660111 4119 - protein coding gene pregnancy upregulated non-ubiquitously expressed CaM kinase
Cpgi22775 X 73659668 to 73660309 641 CpG island CpG island 22775
Tssr163556 X 73659835 to 73659877 42 - TSS region transcription start site region 163556
Tssr163557 X 73660047 to 73660093 46 - TSS region transcription start site region 163557
Gm32261 X 73669001 to 73673049 4048 - lncRNA gene predicted gene, 32261
Cpgi22776 X 73672769 to 73674377 1608 CpG island CpG island 22776
Tssr163558 X 73673021 to 73673035 14 - TSS region transcription start site region 163558
Tssr161271 X 73673129 to 73673135 6 + TSS region transcription start site region 161271
Slc6a8 X 73673150 to 73682502 9352 + protein coding gene solute carrier family 6 (neurotransmitter transporter, creatine), member 8
Tssr161272 X 73673156 to 73673174 18 + TSS region transcription start site region 161272
Tssr161273 X 73675446 to 73675449 3 + TSS region transcription start site region 161273
Tssr161274 X 73675500 to 73675516 16 + TSS region transcription start site region 161274
Tssr161275 X 73675531 to 73675538 7 + TSS region transcription start site region 161275
Tssr161276 X 73675540 to 73675547 7 + TSS region transcription start site region 161276
Tssr161277 X 73676713 to 73676725 12 + TSS region transcription start site region 161277
Tssr161278 X 73681217 to 73681238 21 + TSS region transcription start site region 161278
Tssr161279 X 73681666 to 73681680 14 + TSS region transcription start site region 161279
Tssr161280 X 73681706 to 73681742 36 + TSS region transcription start site region 161280
Bcap31 X 73686178 to 73716175 29997 - protein coding gene B cell receptor associated protein 31
Tssr163559 X 73689581 to 73689623 42 - TSS region transcription start site region 163559
Tssr163560 X 73695244 to 73695247 3 - TSS region transcription start site region 163560
Tssr163561 X 73712522 to 73712543 21 - TSS region transcription start site region 163561
Cpgi22777 X 73716081 to 73716618 537 CpG island CpG island 22777
Tssr163562 X 73716145 to 73716187 42 - TSS region transcription start site region 163562
Tssr163563 X 73716198 to 73716209 11 - TSS region transcription start site region 163563
Tssr163564 X 73716442 to 73716466 24 - TSS region transcription start site region 163564
Tssr161281 X 73716577 to 73716618 41 + TSS region transcription start site region 161281
Abcd1 X 73716597 to 73738534 21937 + protein coding gene ATP-binding cassette, sub-family D (ALD), member 1
Tssr161282 X 73716712 to 73716750 38 + TSS region transcription start site region 161282
Tssr161283 X 73716753 to 73716779 26 + TSS region transcription start site region 161283
Tssr161284 X 73716786 to 73716799 13 + TSS region transcription start site region 161284
Tssr161285 X 73716939 to 73717064 125 + TSS region transcription start site region 161285
Cpgi22778 X 73717059 to 73717415 356 CpG island CpG island 22778
Tssr163565 X 73717830 to 73717842 12 - TSS region transcription start site region 163565
Tssr163566 X 73717850 to 73717864 14 - TSS region transcription start site region 163566
Tssr161286 X 73734101 to 73734128 27 + TSS region transcription start site region 161286
Tssr161287 X 73734564 to 73734575 11 + TSS region transcription start site region 161287
Tssr161288 X 73737789 to 73737806 17 + TSS region transcription start site region 161288
Tssr163567 X 73739239 to 73739245 6 - TSS region transcription start site region 163567
Gm25226 X 73752674 to 73752796 122 + snoRNA gene predicted gene, 25226
Tssr161289 X 73757044 to 73757061 17 + TSS region transcription start site region 161289
Tssr161290 X 73757069 to 73757111 42 + TSS region transcription start site region 161290
Plxnb3 X 73757090 to 73772514 15424 + protein coding gene plexin B3
Tssr161291 X 73765519 to 73765584 65 + TSS region transcription start site region 161291
Tssr161292 X 73774397 to 73774412 15 + TSS region transcription start site region 161292
Srpk3 X 73774405 to 73778925 4520 + protein coding gene serine/arginine-rich protein specific kinase 3
Tssr161293 X 73774423 to 73774434 11 + TSS region transcription start site region 161293
Tssr161294 X 73774436 to 73774454 18 + TSS region transcription start site region 161294
Idh3g X 73778963 to 73786897 7934 - protein coding gene isocitrate dehydrogenase 3 (NAD+), gamma
Tssr163568 X 73780105 to 73780126 21 - TSS region transcription start site region 163568
Tssr163569 X 73780260 to 73780282 22 - TSS region transcription start site region 163569
Tssr163570 X 73781784 to 73781792 8 - TSS region transcription start site region 163570
Tssr163571 X 73786593 to 73786626 33 - TSS region transcription start site region 163571
Cpgi22779 X 73786624 to 73787527 903 CpG island CpG island 22779
Tssr163572 X 73786852 to 73786871 19 - TSS region transcription start site region 163572
Tssr163573 X 73786888 to 73786899 11 - TSS region transcription start site region 163573
Tssr161295 X 73787002 to 73787017 15 + TSS region transcription start site region 161295
Ssr4 X 73787028 to 73790828 3800 + protein coding gene signal sequence receptor, delta
Tssr163574 X 73787033 to 73787059 26 - TSS region transcription start site region 163574
Tssr163575 X 73787079 to 73787098 19 - TSS region transcription start site region 163575
Tssr161296 X 73787092 to 73787101 9 + TSS region transcription start site region 161296
Tssr161297 X 73787108 to 73787115 7 + TSS region transcription start site region 161297
Tssr161298 X 73787126 to 73787131 5 + TSS region transcription start site region 161298
Tssr161299 X 73787133 to 73787198 65 + TSS region transcription start site region 161299
Tssr161300 X 73787203 to 73787230 27 + TSS region transcription start site region 161300
Pdzd4 X 73793359 to 73824969 31610 - protein coding gene PDZ domain containing 4
Cpgi22780 X 73794731 to 73794950 219 CpG island CpG island 22780
Gm14817 X 73795215 to 73797616 2401 + unclassified non-coding RNA gene predicted gene 14817
Tssr163576 X 73806212 to 73806219 7 - TSS region transcription start site region 163576
Gm23615 X 73809417 to 73809481 64 + snoRNA gene predicted gene, 23615
Cpgi22781 X 73823409 to 73823854 445 CpG island CpG island 22781
Cpgi22782 X 73824140 to 73825257 1117 CpG island CpG island 22782
Tssr163577 X 73824353 to 73824367 14 - TSS region transcription start site region 163577
Tssr163578 X 73824405 to 73824423 18 - TSS region transcription start site region 163578
Tssr163579 X 73824435 to 73824452 17 - TSS region transcription start site region 163579
Tssr163580 X 73824549 to 73824598 49 - TSS region transcription start site region 163580
Tssr163581 X 73824901 to 73824914 13 - TSS region transcription start site region 163581
Tssr163582 X 73824938 to 73824977 39 - TSS region transcription start site region 163582
Tssr163583 X 73824993 to 73825006 13 - TSS region transcription start site region 163583
Tssr161301 X 73853779 to 73853800 21 + TSS region transcription start site region 161301
L1cam X 73853780 to 73880838 27058 - protein coding gene L1 cell adhesion molecule
Tssr163584 X 73854391 to 73854451 60 - TSS region transcription start site region 163584
Tssr163585 X 73854468 to 73854487 19 - TSS region transcription start site region 163585
Tssr163586 X 73854537 to 73854548 11 - TSS region transcription start site region 163586
Tssr163587 X 73854582 to 73854603 21 - TSS region transcription start site region 163587
Tssr5636 X 73863033 to 73863037 4 - TSS region transcription start site region 5636
Tssr163588 X 73869831 to 73869846 15 - TSS region transcription start site region 163588
Cpgi22783 X 73880481 to 73880957 476 CpG island CpG island 22783
Tssr163589 X 73880740 to 73880815 75 - TSS region transcription start site region 163589
Tssr163590 X 73880831 to 73880840 9 - TSS region transcription start site region 163590
DXBay6 X 73886148 to 73886309 161 DNA segment DNA segment, Chr X, Baylor 6
Avpr2 X 73891798 to 73894428 2630 + protein coding gene arginine vasopressin receptor 2
Tssr161302 X 73891815 to 73891833 18 + TSS region transcription start site region 161302
Arhgap4 X 73894352 to 73911346 16994 - protein coding gene Rho GTPase activating protein 4
Cpgi22784 X 73911102 to 73911568 466 CpG island CpG island 22784
Tssr163591 X 73911283 to 73911304 21 - TSS region transcription start site region 163591
Naa10 X 73916873 to 73921944 5071 - protein coding gene N(alpha)-acetyltransferase 10, NatA catalytic subunit
Cpgi22785 X 73921405 to 73922264 859 CpG island CpG island 22785
Tssr163592 X 73921839 to 73921916 77 - TSS region transcription start site region 163592
Tssr163593 X 73921917 to 73921922 5 - TSS region transcription start site region 163593
Tssr163594 X 73921930 to 73921941 11 - TSS region transcription start site region 163594
Renbp X 73922121 to 73930850 8729 - protein coding gene renin binding protein
Tssr163595 X 73927996 to 73928020 24 - TSS region transcription start site region 163595
Tssr163596 X 73928040 to 73928057 17 - TSS region transcription start site region 163596
Tssr163597 X 73928092 to 73928101 9 - TSS region transcription start site region 163597
Tssr163598 X 73930520 to 73930532 12 - TSS region transcription start site region 163598
Tssr163599 X 73930717 to 73930728 11 - TSS region transcription start site region 163599
Tssr163600 X 73930735 to 73930750 15 - TSS region transcription start site region 163600
Tssr163601 X 73930751 to 73930823 72 - TSS region transcription start site region 163601
Tssr163602 X 73930834 to 73930851 17 - TSS region transcription start site region 163602
Hcfc1 X 73942792 to 73966357 23565 - protein coding gene host cell factor C1
Tssr163603 X 73945549 to 73945554 5 - TSS region transcription start site region 163603
Tssr163604 X 73950439 to 73950443 4 - TSS region transcription start site region 163604
Cpgi22786 X 73965827 to 73966134 307 CpG island CpG island 22786
Tssr163605 X 73965994 to 73966044 50 - TSS region transcription start site region 163605
Tssr163606 X 73966329 to 73966376 47 - TSS region transcription start site region 163606
Cpgi22787 X 73966460 to 73967874 1414 CpG island CpG island 22787
Tssr161303 X 73966485 to 73966506 21 + TSS region transcription start site region 161303
Tssr163607 X 73966750 to 73966753 3 - TSS region transcription start site region 163607
Tssr163608 X 73966973 to 73967008 35 - TSS region transcription start site region 163608
Gm8545 X 74006702 to 74007502 800 + pseudogene predicted gene 8545
Irak1 X 74013914 to 74023918 10004 - protein coding gene interleukin-1 receptor-associated kinase 1
Tssr163609 X 74014903 to 74014917 14 - TSS region transcription start site region 163609
Cpgi22788 X 74023301 to 74024369 1068 CpG island CpG island 22788
Mir5132 X 74023528 to 74023598 70 - miRNA gene microRNA 5132
Tssr163610 X 74023797 to 74023808 11 - TSS region transcription start site region 163610
Tssr163611 X 74023817 to 74023839 22 - TSS region transcription start site region 163611
Mir718 X 74023849 to 74023936 87 - miRNA gene microRNA 718
Tssr163612 X 74023908 to 74023917 9 - TSS region transcription start site region 163612
Mecp2 X 74026592 to 74085690 59098 - protein coding gene methyl CpG binding protein 2
Tssr161304 X 74027339 to 74027340 1 + TSS region transcription start site region 161304
Tssr163613 X 74059366 to 74059370 4 - TSS region transcription start site region 163613
Tssr163614 X 74073485 to 74073489 4 - TSS region transcription start site region 163614
Tssr163615 X 74074898 to 74074936 38 - TSS region transcription start site region 163615
Cpgi22789 X 74084703 to 74085866 1163 CpG island CpG island 22789
Tssr163616 X 74085340 to 74085357 17 - TSS region transcription start site region 163616
Tssr5637 X 74085554 to 74085563 9 - TSS region transcription start site region 5637
Tssr163617 X 74085586 to 74085652 66 - TSS region transcription start site region 163617
Tssr163618 X 74085656 to 74085672 16 - TSS region transcription start site region 163618
Tssr161305 X 74127463 to 74127469 6 + TSS region transcription start site region 161305
Opn1mw X 74127466 to 74150756 23290 + protein coding gene opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
Gm6758 X 74135133 to 74136187 1054 - pseudogene predicted gene 6758
Tex28 X 74150944 to 74167838 16894 - protein coding gene testis expressed 28
Rpl3-ps2 X 74170653 to 74171866 1213 + pseudogene ribosomal protein L3, pseudogene 2
Tssr161306 X 74177225 to 74177236 11 + TSS region transcription start site region 161306
Tssr161307 X 74177252 to 74177268 16 + TSS region transcription start site region 161307
Tktl1 X 74177259 to 74208498 31239 + protein coding gene transketolase-like 1
Tssr161308 X 74202412 to 74202420 8 + TSS region transcription start site region 161308