Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:72343088-73493535

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Magea10 X 72381870 to 72386858 4988 - protein coding gene melanoma antigen family A, 10
Hstx1 X 72410246 to 78557206 6146960 QTL hybrid sterility, X Chromosome QTL 1
DXMit119 X 72410246 to 72410391 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 119
Gabra3 X 72432681 to 72656848 224167 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
Gm14735 X 72467302 to 72470389 3087 + pseudogene predicted gene 14735
DXMit210 X 72496485 to 72496595 110 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 210
Mir767 X 72589988 to 72590094 106 - miRNA gene microRNA 767
Mir105 X 72591500 to 72591579 79 - miRNA gene microRNA 105
Gm23461 X 72611803 to 72611909 106 + snRNA gene predicted gene, 23461
Tssr163532 X 72656135 to 72656199 64 - TSS region transcription start site region 163532
Desp5 X 72678745 to 72678745 0 QTL despair 5
Gm14736 X 72692510 to 72692845 335 - pseudogene predicted gene 14736
Cpgi22762 X 72825032 to 72825527 495 CpG island CpG island 22762
Tssr161186 X 72825161 to 72825183 22 + TSS region transcription start site region 161186
Gabrq X 72825178 to 72842602 17424 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit theta
Tssr161187 X 72825190 to 72825213 23 + TSS region transcription start site region 161187
Magea9-ps X 72869518 to 72870174 656 + pseudogene melanoma antigen, family A, 9, pseudogene
Cetn2 X 72913565 to 72918344 4779 - protein coding gene centrin 2
Cpgi22763 X 72918088 to 72918535 447 CpG island CpG island 22763
Tssr163533 X 72918328 to 72918396 68 - TSS region transcription start site region 163533
Tssr163534 X 72918413 to 72918424 11 - TSS region transcription start site region 163534
Tssr163535 X 72918425 to 72918436 11 - TSS region transcription start site region 163535
Nsdhl X 72918557 to 72958514 39957 + protein coding gene NAD(P) dependent steroid dehydrogenase-like
Tssr161188 X 72918582 to 72918612 30 + TSS region transcription start site region 161188
Tssr161189 X 72918627 to 72918648 21 + TSS region transcription start site region 161189
Tssr161190 X 72957356 to 72957369 13 + TSS region transcription start site region 161190
Tssr161191 X 72957828 to 72957836 8 + TSS region transcription start site region 161191
Gm14684 X 72981823 to 72982344 521 + lincRNA gene predicted gene 14684
Cpgi22764 X 72987187 to 72987711 524 CpG island CpG island 22764
Zfp185 X 72987339 to 73031543 44204 + protein coding gene zinc finger protein 185
Tssr161192 X 72987352 to 72987366 14 + TSS region transcription start site region 161192
Mir2137 X 72992079 to 72992144 65 + miRNA gene microRNA 2137
Tssr161193 X 72997248 to 72997255 7 + TSS region transcription start site region 161193
Tssr161194 X 72997261 to 72997268 7 + TSS region transcription start site region 161194
Tssr161195 X 72997279 to 72997286 7 + TSS region transcription start site region 161195
DXMit1.2 X 73028439 to 73028544 105 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1.2
DXMit1.1 X 73028444 to 73028541 97 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1.1
Pnma5 X 73033981 to 73037103 3122 - protein coding gene paraneoplastic antigen family 5
Tssr163536 X 73039688 to 73039701 13 - TSS region transcription start site region 163536
Gm6858 X 73049882 to 73050561 679 + pseudogene predicted gene 6858
Tssr161196 X 73064234 to 73064256 22 + TSS region transcription start site region 161196
Pnma3 X 73064787 to 73068191 3404 + protein coding gene paraneoplastic antigen MA3
Xlr4a X 73074345 to 73082478 8133 - protein coding gene X-linked lymphocyte-regulated 4A
Tssr163537 X 73082411 to 73082434 23 - TSS region transcription start site region 163537
Xlr3a X 73086293 to 73097095 10802 - protein coding gene X-linked lymphocyte-regulated 3A
Gm20455 X 73097187 to 73104886 7699 + unclassified non-coding RNA gene predicted gene 20455
Xlr5a X 73107621 to 73119113 11492 - protein coding gene X-linked lymphocyte-regulated 5A
Gm14685 X 73117047 to 73129262 12215 + protein coding gene predicted gene 14685
DXBay18 X 73137232 to 73149450 12218 - protein coding gene DNA segment, Chr X, Baylor 18
Xlr5b X 73148796 to 73158872 10076 + protein coding gene X-linked lymphocyte-regulated 5B
Spin2d X 73175302 to 73176989 1687 - protein coding gene spindlin family, member 2D
Xlr3b X 73192207 to 73202930 10723 + protein coding gene X-linked lymphocyte-regulated 3B
Xlr4b X 73214333 to 73222453 8120 + protein coding gene X-linked lymphocyte-regulated 4B
Cpgi22765 X 73228140 to 73229285 1145 CpG island CpG island 22765
Tssr161197 X 73228272 to 73228314 42 + TSS region transcription start site region 161197
F8a X 73228306 to 73230795 2489 + protein coding gene factor 8-associated gene A
DXMit146a X 73231798 to 73231945 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 146a
Xlr4c X 73234076 to 73243130 9054 - protein coding gene X-linked lymphocyte-regulated 4C
Tssr163538 X 73242985 to 73243025 40 - TSS region transcription start site region 163538
Xlr3c X 73254540 to 73265390 10850 - protein coding gene X-linked lymphocyte-regulated 3C
Xlr5c X 73282896 to 73292976 10080 - protein coding gene X-linked lymphocyte-regulated 5C
Gm5639 X 73297610 to 73299979 2369 + pseudogene predicted pseudogene 5639
Gm8501 X 73313203 to 73313634 431 + pseudogene predicted gene 8501
Gm32150 X 73320718 to 73333675 12957 - lncRNA gene predicted gene, 32150
Gm45015 X 73334996 to 73336840 1844 - protein coding gene predicted gene 45015
Gm7028 X 73335679 to 73336324 645 + pseudogene predicted gene 7028
Cpgi22766 X 73342498 to 73343116 618 CpG island CpG island 22766
Tssr161198 X 73342587 to 73342606 19 + TSS region transcription start site region 161198
Tssr161199 X 73342614 to 73342629 15 + TSS region transcription start site region 161199
Zfp275 X 73342621 to 73359080 16459 + protein coding gene zinc finger protein 275
Tssr161200 X 73342650 to 73342661 11 + TSS region transcription start site region 161200
Tssr161201 X 73356434 to 73356445 11 + TSS region transcription start site region 161201
Tssr161202 X 73358345 to 73358357 12 + TSS region transcription start site region 161202
DXMit176 X 73381643 to 73381791 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 176
Gm18336 X 73396889 to 73398712 1823 - protein coding gene predicted gene, 18336
Cpgi22767 X 73401024 to 73401225 201 CpG island CpG island 22767
Tssr163539 X 73401694 to 73401709 15 - TSS region transcription start site region 163539
Tssr163540 X 73401711 to 73401723 12 - TSS region transcription start site region 163540
Gm26726 X 73402211 to 73411436 9225 - antisense lncRNA gene predicted gene, 26726
Gm37741 X 73407676 to 73408931 1255 + unclassified gene predicted gene, 37741
Cpgi22768 X 73410949 to 73411208 259 CpG island CpG island 22768
Zfp92 X 73411096 to 73428385 17289 + protein coding gene zinc finger protein 92
Tssr161203 X 73411097 to 73411125 28 + TSS region transcription start site region 161203
Tssr161204 X 73420706 to 73420708 2 + TSS region transcription start site region 161204
Cpgi22769 X 73421918 to 73422541 623 CpG island CpG island 22769
Trex2 X 73433705 to 73435343 1638 - protein coding gene three prime repair exonuclease 2
Tssr163541 X 73435332 to 73435350 18 - TSS region transcription start site region 163541
Haus7 X 73437315 to 73459029 21714 - protein coding gene HAUS augmin-like complex, subunit 7
Cpgi22770 X 73458879 to 73459136 257 CpG island CpG island 22770
Tssr163542 X 73458945 to 73458980 35 - TSS region transcription start site region 163542
Tssr163543 X 73458990 to 73459044 54 - TSS region transcription start site region 163543
Tssr161205 X 73483580 to 73483588 8 + TSS region transcription start site region 161205
Bgn X 73483602 to 73495933 12331 + protein coding gene biglycan
Tssr161206 X 73483625 to 73483644 19 + TSS region transcription start site region 161206
Tssr161207 X 73483688 to 73483693 5 + TSS region transcription start site region 161207
Tssr161208 X 73490763 to 73490787 24 + TSS region transcription start site region 161208
Tssr161209 X 73490797 to 73490810 13 + TSS region transcription start site region 161209
Tssr161210 X 73490820 to 73490829 9 + TSS region transcription start site region 161210
Tssr161211 X 73490849 to 73490875 26 + TSS region transcription start site region 161211
Tssr161212 X 73490904 to 73490941 37 + TSS region transcription start site region 161212
Tssr161213 X 73490971 to 73490995 24 + TSS region transcription start site region 161213
Tssr161214 X 73491314 to 73491365 51 + TSS region transcription start site region 161214
Tssr163544 X 73491402 to 73491436 34 - TSS region transcription start site region 163544
Tssr161215 X 73491965 to 73492004 39 + TSS region transcription start site region 161215
Tssr161216 X 73492011 to 73492022 11 + TSS region transcription start site region 161216
Tssr161217 X 73492043 to 73492061 18 + TSS region transcription start site region 161217
Tssr163545 X 73492050 to 73492063 13 - TSS region transcription start site region 163545
Tssr161218 X 73492063 to 73492074 11 + TSS region transcription start site region 161218
Tssr163546 X 73492081 to 73492127 46 - TSS region transcription start site region 163546
Tssr161219 X 73492121 to 73492135 14 + TSS region transcription start site region 161219
Tssr161220 X 73492726 to 73492738 12 + TSS region transcription start site region 161220
Tssr161221 X 73492740 to 73492797 57 + TSS region transcription start site region 161221
Tssr161222 X 73492804 to 73492812 8 + TSS region transcription start site region 161222
Tssr161223 X 73492970 to 73492982 12 + TSS region transcription start site region 161223
Tssr161224 X 73493010 to 73493036 26 + TSS region transcription start site region 161224
Tssr161225 X 73493194 to 73493214 20 + TSS region transcription start site region 161225
Tssr161226 X 73493236 to 73493265 29 + TSS region transcription start site region 161226
Tssr5633 X 73493266 to 73493277 11 + TSS region transcription start site region 5633
Tssr161227 X 73493280 to 73493315 35 + TSS region transcription start site region 161227
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Mhysq2 X 140302463 to 72410246 -67892217 QTL male hybrid sterility QTL 2