Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:69610060-73302849

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq6 X 51683498 to 71391145 19707647 QTL obesity QTL 6
Aff2 X 69360294 to 69868037 507743 + protein coding gene AF4/FMR2 family, member 2
DXMit109 X 69674903 to 69675052 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 109
DXMit194 X 69713595 to 69713714 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 194
Tssr5629 X 69853631 to 69853633 2 + TSS region transcription start site region 5629
DXMit142 X 69854278 to 69854604 326 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 142
1700111N16Rik X 69929260 to 70143588 214328 - antisense lncRNA gene RIKEN cDNA 1700111N16 gene
Tssr5630 X 69945298 to 69945308 10 + TSS region transcription start site region 5630
1700020N15Rik X 69945300 to 69945978 678 + protein coding gene RIKEN cDNA 1700020N15 gene
Tssr163511 X 70143574 to 70143591 17 - TSS region transcription start site region 163511
Tssr161152 X 70184659 to 70184661 2 + TSS region transcription start site region 161152
Ids X 70343069 to 70365084 22015 - protein coding gene iduronate 2-sulfatase
Tssr163512 X 70344274 to 70344285 11 - TSS region transcription start site region 163512
Tssr163513 X 70344286 to 70344311 25 - TSS region transcription start site region 163513
Tssr163514 X 70344356 to 70344377 21 - TSS region transcription start site region 163514
Tssr163515 X 70344638 to 70344648 10 - TSS region transcription start site region 163515
Tssr163516 X 70344857 to 70344920 63 - TSS region transcription start site region 163516
Tssr163517 X 70344944 to 70344988 44 - TSS region transcription start site region 163517
Tssr163518 X 70345252 to 70345285 33 - TSS region transcription start site region 163518
Tssr163519 X 70346154 to 70346184 30 - TSS region transcription start site region 163519
Cpgi22751 X 70364868 to 70365213 345 CpG island CpG island 22751
Tssr163520 X 70364928 to 70364937 9 - TSS region transcription start site region 163520
Tssr163521 X 70365020 to 70365042 22 - TSS region transcription start site region 163521
Tssr163522 X 70365052 to 70365112 60 - TSS region transcription start site region 163522
Tssr163523 X 70385813 to 70385838 25 - TSS region transcription start site region 163523
Tssr161153 X 70385870 to 70385944 74 + TSS region transcription start site region 161153
1110012L19Rik X 70385913 to 70389416 3503 + protein coding gene RIKEN cDNA 1110012L19 gene
Tssr161154 X 70385947 to 70385963 16 + TSS region transcription start site region 161154
4930567H17Rik X 70393901 to 70394740 839 - protein coding gene RIKEN cDNA 4930567H17 gene
Gm16407 X 70400497 to 70401063 566 + pseudogene predicted pseudogene 16407
Gm14704 X 70403184 to 70403942 758 - pseudogene predicted gene 14704
Gm6823 X 70420719 to 70422454 1735 - pseudogene predicted gene 6823
Gm16441 X 70426311 to 70427234 923 - pseudogene predicted pseudogene 16441
Gm14722 X 70432437 to 70432992 555 - pseudogene predicted gene 14722
Gm14721 X 70436409 to 70436933 524 - pseudogene predicted gene 14721
Tmem185a X 70459753 to 70477180 17427 - protein coding gene transmembrane protein 185A
Cpgi22752 X 70476732 to 70477229 497 CpG island CpG island 22752
Tssr163524 X 70477100 to 70477161 61 - TSS region transcription start site region 163524
Tssr163525 X 70477170 to 70477197 27 - TSS region transcription start site region 163525
Gm14727 X 70503140 to 70503664 524 + pseudogene predicted gene 14727
Gm14729 X 70507076 to 70507637 561 + pseudogene predicted gene 14729
Gm6038 X 70513048 to 70513995 947 + pseudogene predicted pseudogene 6038
Gm8401 X 70517777 to 70519512 1735 + pseudogene predicted gene 8401
Gm14726 X 70536402 to 70537172 770 + pseudogene predicted gene 14726
Gm14724 X 70539310 to 70539846 536 - pseudogene predicted gene 14724
Gm14725 X 70545558 to 70546385 827 + pseudogene predicted gene 14725
Gm14728 X 70564118 to 70564609 491 - pseudogene predicted gene 14728
Gm46679 X 70569347 to 70571209 1862 + lncRNA gene predicted gene, 46679
Gm14732 X 70600263 to 70600807 544 - pseudogene predicted gene 14732
Gm14731 X 70626355 to 70626730 375 - pseudogene predicted gene 14731
Tssr5631 X 70630502 to 70630505 3 + TSS region transcription start site region 5631
Rplp1-ps1 X 70653206 to 70653550 344 - pseudogene ribosomal protein, large, P1, pseudogene 1
Gm22785 X 70693476 to 70693607 131 + snoRNA gene predicted gene, 22785
Gm8410 X 70770867 to 70771471 604 + pseudogene predicted gene 8410
Tssr163526 X 70867545 to 70867548 3 - TSS region transcription start site region 163526
Gm6062 X 70978281 to 70978911 630 + pseudogene predicted gene 6062
Gm38595 X 71020781 to 71028296 7515 + lncRNA gene predicted gene, 38595
Cpgi22753 X 71049748 to 71050387 639 CpG island CpG island 22753
Tssr161155 X 71050065 to 71050125 60 + TSS region transcription start site region 161155
Tssr161156 X 71050126 to 71050144 18 + TSS region transcription start site region 161156
Tssr161157 X 71050160 to 71050171 11 + TSS region transcription start site region 161157
Mamld1 X 71050256 to 71156056 105800 + protein coding gene mastermind-like domain containing 1
DXMit120 X 71067186 to 71067298 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 120
Tssr161158 X 71079939 to 71079946 7 + TSS region transcription start site region 161158
Tssr161159 X 71118680 to 71118683 3 + TSS region transcription start site region 161159
Tssr161160 X 71118941 to 71118950 9 + TSS region transcription start site region 161160
n-R5s8 X 71131237 to 71131354 117 + rRNA gene nuclear encoded rRNA 5S 8
Gm14730 X 71197127 to 71198171 1044 + pseudogene predicted gene 14730
Mtm1 X 71210767 to 71315413 104646 + protein coding gene X-linked myotubular myopathy gene 1
Cpgi22754 X 71214981 to 71215202 221 CpG island CpG island 22754
Tssr161161 X 71215021 to 71215063 42 + TSS region transcription start site region 161161
Tssr161162 X 71215068 to 71215079 11 + TSS region transcription start site region 161162
Tssr163527 X 71215522 to 71215555 33 - TSS region transcription start site region 163527
Cpgi22755 X 71364532 to 71365307 775 CpG island CpG island 22755
Tssr161163 X 71364745 to 71364794 49 + TSS region transcription start site region 161163
Mtmr1 X 71364760 to 71419196 54436 + protein coding gene myotubularin related protein 1
Tssr161164 X 71364901 to 71364920 19 + TSS region transcription start site region 161164
DXMit25 X 71390975 to 71391145 170 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 25
Cd99l2 X 71420060 to 71492849 72789 - protein coding gene CD99 antigen-like 2
Gm16189 X 71439714 to 71469851 30137 + antisense lncRNA gene predicted gene 16189
Cpgi22756 X 71492556 to 71492806 250 CpG island CpG island 22756
Tssr163528 X 71492592 to 71492658 66 - TSS region transcription start site region 163528
Tssr163529 X 71492799 to 71492860 61 - TSS region transcription start site region 163529
Gm8421 X 71498372 to 71498676 304 - pseudogene predicted gene 8421
Gm23945 X 71531285 to 71531376 91 - miRNA gene predicted gene, 23945
Cpgi22757 X 71555609 to 71557331 1722 CpG island CpG island 22757
Hmgb3 X 71555917 to 71560673 4756 + protein coding gene high mobility group box 3
Tssr161165 X 71555979 to 71556022 43 + TSS region transcription start site region 161165
Tssr161166 X 71556025 to 71556041 16 + TSS region transcription start site region 161166
Tssr161167 X 71556064 to 71556071 7 + TSS region transcription start site region 161167
Tssr161168 X 71556309 to 71556342 33 + TSS region transcription start site region 161168
Tssr161169 X 71556874 to 71556904 30 + TSS region transcription start site region 161169
Tssr161170 X 71575755 to 71575798 43 + TSS region transcription start site region 161170
Tssr161171 X 71638572 to 71638577 5 + TSS region transcription start site region 161171
Tssr161172 X 71663665 to 71663671 6 + TSS region transcription start site region 161172
Gpr50 X 71663667 to 71669257 5590 + protein coding gene G-protein-coupled receptor 50
Cpgi22758 X 71663824 to 71664920 1096 CpG island CpG island 22758
Gm14723 X 71727657 to 71727871 214 + pseudogene predicted gene 14723
Tssr161173 X 71803611 to 71803615 4 + TSS region transcription start site region 161173
Rpl30-ps10 X 71803688 to 71804034 346 + pseudogene ribosomal protein L30, pseudogene 10
Vma21 X 71812753 to 71824706 11953 + protein coding gene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Tssr161174 X 71812774 to 71812795 21 + TSS region transcription start site region 161174
Tssr161175 X 71812800 to 71812807 7 + TSS region transcription start site region 161175
Tssr161176 X 71812810 to 71812821 11 + TSS region transcription start site region 161176
Tssr161177 X 71816120 to 71816129 9 + TSS region transcription start site region 161177
Tssr161178 X 71816234 to 71816289 55 + TSS region transcription start site region 161178
Cpgi22759 X 71816388 to 71817163 775 CpG island CpG island 22759
Tssr163530 X 71816650 to 71816666 16 - TSS region transcription start site region 163530
Tssr161179 X 71816751 to 71816760 9 + TSS region transcription start site region 161179
Tssr161180 X 71816772 to 71816813 41 + TSS region transcription start site region 161180
Tssr161181 X 71816834 to 71816843 9 + TSS region transcription start site region 161181
Tssr161182 X 71915577 to 71915616 39 + TSS region transcription start site region 161182
Tssr161183 X 71932433 to 71932444 11 + TSS region transcription start site region 161183
Gm1141 X 71932438 to 71940871 8433 + protein coding gene predicted gene 1141
Cpgi22760 X 71962148 to 71963133 985 CpG island CpG island 22760
Tssr5632 X 71962564 to 71962597 33 + TSS region transcription start site region 5632
Prrg3 X 71962624 to 71972722 10098 + protein coding gene proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
Tssr161184 X 71962955 to 71962968 13 + TSS region transcription start site region 161184
Tssr161185 X 71962971 to 71963013 42 + TSS region transcription start site region 161185
Fate1 X 71972986 to 71989046 16060 + protein coding gene fetal and adult testis expressed 1
Cnga2 X 71991849 to 72010218 18369 + protein coding gene cyclic nucleotide gated channel alpha 2
DXMit94 X 72023993 to 72024099 106 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 94
Gm39519 X 72218854 to 72220804 1950 + lncRNA gene predicted gene, 39519
Magea4 X 72222017 to 72222964 947 + protein coding gene melanoma antigen, family A, 4
Gm47265 X 72229990 to 72231507 1517 + pseudogene predicted gene, 47265
Gabre X 72256926 to 72274822 17896 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
Mir224 X 72261031 to 72261112 81 - miRNA gene microRNA 224
Mir452 X 72262224 to 72262308 84 - miRNA gene microRNA 452
Tssr163531 X 72274747 to 72274757 10 - TSS region transcription start site region 163531
Cpgi22761 X 72274821 to 72274976 155 CpG island CpG island 22761
DXBay14 X 72337785 to 72337968 183 DNA segment DNA segment, Chr X, Baylor 14
Magea10 X 72381870 to 72386858 4988 - protein coding gene melanoma antigen family A, 10
DXMit119 X 72410246 to 72410391 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 119
Hstx1 X 72410246 to 78557206 6146960 QTL hybrid sterility, X Chromosome QTL 1
Gabra3 X 72432681 to 72656848 224167 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
Gm14735 X 72467302 to 72470389 3087 + pseudogene predicted gene 14735
DXMit210 X 72496485 to 72496595 110 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 210
Mir767 X 72589988 to 72590094 106 - miRNA gene microRNA 767
Mir105 X 72591500 to 72591579 79 - miRNA gene microRNA 105
Gm23461 X 72611803 to 72611909 106 + snRNA gene predicted gene, 23461
Tssr163532 X 72656135 to 72656199 64 - TSS region transcription start site region 163532
Desp5 X 72678745 to 72678745 0 QTL despair 5
Gm14736 X 72692510 to 72692845 335 - pseudogene predicted gene 14736
Cpgi22762 X 72825032 to 72825527 495 CpG island CpG island 22762
Tssr161186 X 72825161 to 72825183 22 + TSS region transcription start site region 161186
Gabrq X 72825178 to 72842602 17424 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit theta
Tssr161187 X 72825190 to 72825213 23 + TSS region transcription start site region 161187
Magea9-ps X 72869518 to 72870174 656 + pseudogene melanoma antigen, family A, 9, pseudogene
Cetn2 X 72913565 to 72918344 4779 - protein coding gene centrin 2
Cpgi22763 X 72918088 to 72918535 447 CpG island CpG island 22763
Tssr163533 X 72918328 to 72918396 68 - TSS region transcription start site region 163533
Tssr163534 X 72918413 to 72918424 11 - TSS region transcription start site region 163534
Tssr163535 X 72918425 to 72918436 11 - TSS region transcription start site region 163535
Nsdhl X 72918557 to 72958514 39957 + protein coding gene NAD(P) dependent steroid dehydrogenase-like
Tssr161188 X 72918582 to 72918612 30 + TSS region transcription start site region 161188
Tssr161189 X 72918627 to 72918648 21 + TSS region transcription start site region 161189
Tssr161190 X 72957356 to 72957369 13 + TSS region transcription start site region 161190
Tssr161191 X 72957828 to 72957836 8 + TSS region transcription start site region 161191
Gm14684 X 72981823 to 72982344 521 + lincRNA gene predicted gene 14684
Cpgi22764 X 72987187 to 72987711 524 CpG island CpG island 22764
Zfp185 X 72987339 to 73031543 44204 + protein coding gene zinc finger protein 185
Tssr161192 X 72987352 to 72987366 14 + TSS region transcription start site region 161192
Mir2137 X 72992079 to 72992144 65 + miRNA gene microRNA 2137
Tssr161193 X 72997248 to 72997255 7 + TSS region transcription start site region 161193
Tssr161194 X 72997261 to 72997268 7 + TSS region transcription start site region 161194
Tssr161195 X 72997279 to 72997286 7 + TSS region transcription start site region 161195
DXMit1.2 X 73028439 to 73028544 105 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1.2
DXMit1.1 X 73028444 to 73028541 97 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 1.1
Pnma5 X 73033981 to 73037103 3122 - protein coding gene paraneoplastic antigen family 5
Tssr163536 X 73039688 to 73039701 13 - TSS region transcription start site region 163536
Gm6858 X 73049882 to 73050561 679 + pseudogene predicted gene 6858
Tssr161196 X 73064234 to 73064256 22 + TSS region transcription start site region 161196
Pnma3 X 73064787 to 73068191 3404 + protein coding gene paraneoplastic antigen MA3
Xlr4a X 73074345 to 73082478 8133 - protein coding gene X-linked lymphocyte-regulated 4A
Tssr163537 X 73082411 to 73082434 23 - TSS region transcription start site region 163537
Xlr3a X 73086293 to 73097095 10802 - protein coding gene X-linked lymphocyte-regulated 3A
Gm20455 X 73097187 to 73104886 7699 + unclassified non-coding RNA gene predicted gene 20455
Xlr5a X 73107621 to 73119113 11492 - protein coding gene X-linked lymphocyte-regulated 5A
Gm14685 X 73117047 to 73129262 12215 + protein coding gene predicted gene 14685
DXBay18 X 73137232 to 73149450 12218 - protein coding gene DNA segment, Chr X, Baylor 18
Xlr5b X 73148796 to 73158872 10076 + protein coding gene X-linked lymphocyte-regulated 5B
Spin2d X 73175302 to 73176989 1687 - protein coding gene spindlin family, member 2D
Xlr3b X 73192207 to 73202930 10723 + protein coding gene X-linked lymphocyte-regulated 3B
Xlr4b X 73214333 to 73222453 8120 + protein coding gene X-linked lymphocyte-regulated 4B
Cpgi22765 X 73228140 to 73229285 1145 CpG island CpG island 22765
Tssr161197 X 73228272 to 73228314 42 + TSS region transcription start site region 161197
F8a X 73228306 to 73230795 2489 + protein coding gene factor 8-associated gene A
DXMit146a X 73231798 to 73231945 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 146a
Xlr4c X 73234076 to 73243130 9054 - protein coding gene X-linked lymphocyte-regulated 4C
Tssr163538 X 73242985 to 73243025 40 - TSS region transcription start site region 163538
Xlr3c X 73254540 to 73265390 10850 - protein coding gene X-linked lymphocyte-regulated 3C
Xlr5c X 73282896 to 73292976 10080 - protein coding gene X-linked lymphocyte-regulated 5C
Gm5639 X 73297610 to 73299979 2369 + pseudogene predicted pseudogene 5639
Shm4 X 103019114 to 73028444 -29990670 QTL sperm head morphology 4
Mhysq2 X 140302463 to 72410246 -67892217 QTL male hybrid sterility QTL 2