Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:67920427-70860433

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hstx2 X 64880641 to 69581094 4700453 QTL hybrid sterility, X Chromosome QTL 2
4933436I01Rik X 67919864 to 67921450 1586 - protein coding gene RIKEN cDNA 4933436I01 gene
Tssr163508 X 67921430 to 67921438 8 - TSS region transcription start site region 163508
Mir201 X 67988096 to 67988161 65 - miRNA gene microRNA 201
Mirc48 X 67988096 to 67988451 355 complex/cluster/region microRNA cluster 48, including Mir201 through Mir547
Mir547 X 67988374 to 67988451 77 - miRNA gene microRNA 547
Gm14688 X 68006985 to 68007287 302 - pseudogene predicted gene 14688
Mir509 X 68010105 to 68010179 74 - miRNA gene microRNA 509
Tssr163509 X 68044851 to 68044861 10 - TSS region transcription start site region 163509
Gm4910 X 68315952 to 68316317 365 - pseudogene predicted pseudogene 4910
Gm5391 X 68319638 to 68320250 612 - pseudogene predicted gene 5391
Tssr161134 X 68495396 to 68495420 24 + TSS region transcription start site region 161134
Tssr161135 X 68495425 to 68495441 16 + TSS region transcription start site region 161135
Gm6806 X 68503126 to 68504131 1005 + pseudogene predicted gene 6806
Gm22332 X 68563127 to 68563252 125 + snoRNA gene predicted gene, 22332
Gm18440 X 68579684 to 68580574 890 + pseudogene predicted gene, 18440
Gm14701 X 68613793 to 68614140 347 + pseudogene predicted gene 14701
Gm5638 X 68629428 to 68630682 1254 + pseudogene predicted gene 5638
Fmr1os X 68667514 to 68678399 10885 - lincRNA gene fragile X mental retardation 1, opposite strand
Gm27979 X 68676848 to 68676903 55 + unclassified non-coding RNA gene predicted gene, 27979
Cpgi22748 X 68678206 to 68679425 1219 CpG island CpG island 22748
Gm27838 X 68678485 to 68678612 127 + unclassified non-coding RNA gene predicted gene, 27838
Tssr161136 X 68678541 to 68678554 13 + TSS region transcription start site region 161136
Fmr1 X 68678541 to 68717963 39422 + protein coding gene fragile X mental retardation 1
Tssr161137 X 68678571 to 68678589 18 + TSS region transcription start site region 161137
Tssr161138 X 68678609 to 68678620 11 + TSS region transcription start site region 161138
Tssr161139 X 68678626 to 68678639 13 + TSS region transcription start site region 161139
Tssr161140 X 68678642 to 68678667 25 + TSS region transcription start site region 161140
Tssr161141 X 68678676 to 68678691 15 + TSS region transcription start site region 161141
Tssr161142 X 68678712 to 68678721 9 + TSS region transcription start site region 161142
Tssr161143 X 68678784 to 68678801 17 + TSS region transcription start site region 161143
Tssr161144 X 68683941 to 68683954 13 + TSS region transcription start site region 161144
Gm22435 X 68684148 to 68684275 127 - snoRNA gene predicted gene, 22435
Tssr161145 X 68761839 to 68761873 34 + TSS region transcription start site region 161145
Fmr1nb X 68761839 to 68804561 42722 + protein coding gene Fmr1 neighbor
Tssr161146 X 68761875 to 68761887 12 + TSS region transcription start site region 161146
Tssr161147 X 68761890 to 68761901 11 + TSS region transcription start site region 161147
Gm14699 X 68782640 to 68782867 227 - pseudogene predicted gene 14699
Gm14698 X 68821093 to 68825318 4225 + protein coding gene predicted gene 14698
Cpgi22749 X 68821182 to 68821406 224 CpG island CpG island 22749
Gm6812 X 68892375 to 68893053 678 - protein coding gene predicted gene 6812
Gm8344 X 68921157 to 68922012 855 - pseudogene predicted gene 8344
n-R5s7 X 68949564 to 68949684 120 - rRNA gene nuclear encoded rRNA 5S 7
Gm14705 X 69356596 to 69361269 4673 - antisense lncRNA gene predicted gene 14705
Cpgi22750 X 69359830 to 69361241 1411 CpG island CpG island 22750
Aff2 X 69360294 to 69868037 507743 + protein coding gene AF4/FMR2 family, member 2
Tssr161148 X 69360306 to 69360387 81 + TSS region transcription start site region 161148
Tssr161149 X 69360394 to 69360411 17 + TSS region transcription start site region 161149
Tssr161150 X 69390427 to 69390433 6 + TSS region transcription start site region 161150
2610007B07Rik X 69409225 to 69411189 1964 unclassified gene RIKEN cDNA 2610007B07 gene
Tssr161151 X 69415312 to 69415339 27 + TSS region transcription start site region 161151
DXMit110 X 69587863 to 69587995 132 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 110
Gm8172 X 69605496 to 69606245 749 - pseudogene predicted pseudogene 8172
Tssr163510 X 69606287 to 69606293 6 - TSS region transcription start site region 163510
DXMit109 X 69674903 to 69675052 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 109
DXMit194 X 69713595 to 69713714 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 194
Tssr5629 X 69853631 to 69853633 2 + TSS region transcription start site region 5629
DXMit142 X 69854278 to 69854604 326 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 142
1700111N16Rik X 69929260 to 70143588 214328 - antisense lncRNA gene RIKEN cDNA 1700111N16 gene
Tssr5630 X 69945298 to 69945308 10 + TSS region transcription start site region 5630
1700020N15Rik X 69945300 to 69945978 678 + protein coding gene RIKEN cDNA 1700020N15 gene
Tssr163511 X 70143574 to 70143591 17 - TSS region transcription start site region 163511
Tssr161152 X 70184659 to 70184661 2 + TSS region transcription start site region 161152
Ids X 70343069 to 70365084 22015 - protein coding gene iduronate 2-sulfatase
Tssr163512 X 70344274 to 70344285 11 - TSS region transcription start site region 163512
Tssr163513 X 70344286 to 70344311 25 - TSS region transcription start site region 163513
Tssr163514 X 70344356 to 70344377 21 - TSS region transcription start site region 163514
Tssr163515 X 70344638 to 70344648 10 - TSS region transcription start site region 163515
Tssr163516 X 70344857 to 70344920 63 - TSS region transcription start site region 163516
Tssr163517 X 70344944 to 70344988 44 - TSS region transcription start site region 163517
Tssr163518 X 70345252 to 70345285 33 - TSS region transcription start site region 163518
Tssr163519 X 70346154 to 70346184 30 - TSS region transcription start site region 163519
Cpgi22751 X 70364868 to 70365213 345 CpG island CpG island 22751
Tssr163520 X 70364928 to 70364937 9 - TSS region transcription start site region 163520
Tssr163521 X 70365020 to 70365042 22 - TSS region transcription start site region 163521
Tssr163522 X 70365052 to 70365112 60 - TSS region transcription start site region 163522
Tssr163523 X 70385813 to 70385838 25 - TSS region transcription start site region 163523
Tssr161153 X 70385870 to 70385944 74 + TSS region transcription start site region 161153
1110012L19Rik X 70385913 to 70389416 3503 + protein coding gene RIKEN cDNA 1110012L19 gene
Tssr161154 X 70385947 to 70385963 16 + TSS region transcription start site region 161154
4930567H17Rik X 70393901 to 70394740 839 - protein coding gene RIKEN cDNA 4930567H17 gene
Gm16407 X 70400497 to 70401063 566 + pseudogene predicted pseudogene 16407
Gm14704 X 70403184 to 70403942 758 - pseudogene predicted gene 14704
Gm6823 X 70420719 to 70422454 1735 - pseudogene predicted gene 6823
Gm16441 X 70426311 to 70427234 923 - pseudogene predicted pseudogene 16441
Gm14722 X 70432437 to 70432992 555 - pseudogene predicted gene 14722
Gm14721 X 70436409 to 70436933 524 - pseudogene predicted gene 14721
Tmem185a X 70459753 to 70477180 17427 - protein coding gene transmembrane protein 185A
Cpgi22752 X 70476732 to 70477229 497 CpG island CpG island 22752
Tssr163524 X 70477100 to 70477161 61 - TSS region transcription start site region 163524
Tssr163525 X 70477170 to 70477197 27 - TSS region transcription start site region 163525
Gm14727 X 70503140 to 70503664 524 + pseudogene predicted gene 14727
Gm14729 X 70507076 to 70507637 561 + pseudogene predicted gene 14729
Gm6038 X 70513048 to 70513995 947 + pseudogene predicted pseudogene 6038
Gm8401 X 70517777 to 70519512 1735 + pseudogene predicted gene 8401
Gm14726 X 70536402 to 70537172 770 + pseudogene predicted gene 14726
Gm14724 X 70539310 to 70539846 536 - pseudogene predicted gene 14724
Gm14725 X 70545558 to 70546385 827 + pseudogene predicted gene 14725
Gm14728 X 70564118 to 70564609 491 - pseudogene predicted gene 14728
Gm46679 X 70569347 to 70571209 1862 + lncRNA gene predicted gene, 46679
Gm14732 X 70600263 to 70600807 544 - pseudogene predicted gene 14732
Gm14731 X 70626355 to 70626730 375 - pseudogene predicted gene 14731
Tssr5631 X 70630502 to 70630505 3 + TSS region transcription start site region 5631
Rplp1-ps1 X 70653206 to 70653550 344 - pseudogene ribosomal protein, large, P1, pseudogene 1
Gm22785 X 70693476 to 70693607 131 + snoRNA gene predicted gene, 22785
Gm8410 X 70770867 to 70771471 604 + pseudogene predicted gene 8410