Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:67643793-69584140

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hstx2 X 64880641 to 69581094 4700453 QTL hybrid sterility, X Chromosome QTL 2
Gm14687 X 67660090 to 67663856 3766 + pseudogene predicted gene 14687
Gm1140 X 67682900 to 67693562 10662 - protein coding gene predicted gene 1140
Gm14692 X 67695698 to 67706258 10560 + protein coding gene predicted gene 14692
Rpl7a-ps13 X 67726244 to 67726806 562 + pseudogene ribosomal protein L7A, pseudogene 13
4933436I01Rik X 67919864 to 67921450 1586 - protein coding gene RIKEN cDNA 4933436I01 gene
Tssr163508 X 67921430 to 67921438 8 - TSS region transcription start site region 163508
Mir201 X 67988096 to 67988161 65 - miRNA gene microRNA 201
Mirc48 X 67988096 to 67988451 355 complex/cluster/region microRNA cluster 48, including Mir201 through Mir547
Mir547 X 67988374 to 67988451 77 - miRNA gene microRNA 547
Gm14688 X 68006985 to 68007287 302 - pseudogene predicted gene 14688
Mir509 X 68010105 to 68010179 74 - miRNA gene microRNA 509
Tssr163509 X 68044851 to 68044861 10 - TSS region transcription start site region 163509
Gm4910 X 68315952 to 68316317 365 - pseudogene predicted pseudogene 4910
Gm5391 X 68319638 to 68320250 612 - pseudogene predicted gene 5391
Tssr161134 X 68495396 to 68495420 24 + TSS region transcription start site region 161134
Tssr161135 X 68495425 to 68495441 16 + TSS region transcription start site region 161135
Gm6806 X 68503126 to 68504131 1005 + pseudogene predicted gene 6806
Gm22332 X 68563127 to 68563252 125 + snoRNA gene predicted gene, 22332
Gm18440 X 68579684 to 68580574 890 + pseudogene predicted gene, 18440
Gm14701 X 68613793 to 68614140 347 + pseudogene predicted gene 14701
Gm5638 X 68629428 to 68630682 1254 + pseudogene predicted gene 5638
Fmr1os X 68667514 to 68678399 10885 - lincRNA gene fragile X mental retardation 1, opposite strand
Gm27979 X 68676848 to 68676903 55 + unclassified non-coding RNA gene predicted gene, 27979
Cpgi22748 X 68678206 to 68679425 1219 CpG island CpG island 22748
Gm27838 X 68678485 to 68678612 127 + unclassified non-coding RNA gene predicted gene, 27838
Tssr161136 X 68678541 to 68678554 13 + TSS region transcription start site region 161136
Fmr1 X 68678541 to 68717963 39422 + protein coding gene fragile X mental retardation 1
Tssr161137 X 68678571 to 68678589 18 + TSS region transcription start site region 161137
Tssr161138 X 68678609 to 68678620 11 + TSS region transcription start site region 161138
Tssr161139 X 68678626 to 68678639 13 + TSS region transcription start site region 161139
Tssr161140 X 68678642 to 68678667 25 + TSS region transcription start site region 161140
Tssr161141 X 68678676 to 68678691 15 + TSS region transcription start site region 161141
Tssr161142 X 68678712 to 68678721 9 + TSS region transcription start site region 161142
Tssr161143 X 68678784 to 68678801 17 + TSS region transcription start site region 161143
Tssr161144 X 68683941 to 68683954 13 + TSS region transcription start site region 161144
Gm22435 X 68684148 to 68684275 127 - snoRNA gene predicted gene, 22435
Fmr1nb X 68761839 to 68804561 42722 + protein coding gene Fmr1 neighbor
Tssr161145 X 68761839 to 68761873 34 + TSS region transcription start site region 161145
Tssr161146 X 68761875 to 68761887 12 + TSS region transcription start site region 161146
Tssr161147 X 68761890 to 68761901 11 + TSS region transcription start site region 161147
Gm14699 X 68782640 to 68782867 227 - pseudogene predicted gene 14699
Gm14698 X 68821093 to 68825318 4225 + protein coding gene predicted gene 14698
Cpgi22749 X 68821182 to 68821406 224 CpG island CpG island 22749
Gm6812 X 68892375 to 68893053 678 - protein coding gene predicted gene 6812
Gm8344 X 68921157 to 68922012 855 - pseudogene predicted gene 8344
n-R5s7 X 68949564 to 68949684 120 - rRNA gene nuclear encoded rRNA 5S 7
Gm14705 X 69356596 to 69361269 4673 - antisense lncRNA gene predicted gene 14705
Cpgi22750 X 69359830 to 69361241 1411 CpG island CpG island 22750
Aff2 X 69360294 to 69868037 507743 + protein coding gene AF4/FMR2 family, member 2
Tssr161148 X 69360306 to 69360387 81 + TSS region transcription start site region 161148
Tssr161149 X 69360394 to 69360411 17 + TSS region transcription start site region 161149
Tssr161150 X 69390427 to 69390433 6 + TSS region transcription start site region 161150
2610007B07Rik X 69409225 to 69411189 1964 unclassified gene RIKEN cDNA 2610007B07 gene
Tssr161151 X 69415312 to 69415339 27 + TSS region transcription start site region 161151