Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:64405641-70056094

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr5628 X 64483165 to 64483169 4 + TSS region transcription start site region 5628
Gm24598 X 64496584 to 64496657 73 + snoRNA gene predicted gene, 24598
Tssr161120 X 64497003 to 64497010 7 + TSS region transcription start site region 161120
Gm14676 X 64750401 to 64751258 857 - pseudogene predicted gene 14676
DXMit76 X 64757946 to 64758141 195 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 76
Gm26111 X 64800511 to 64800616 105 + snRNA gene predicted gene, 26111
Gm14667 X 64842692 to 64844041 1349 - pseudogene predicted gene 14667
Hstx2 X 64880641 to 69581094 4700453 QTL hybrid sterility, X Chromosome QTL 2
Gm14673 X 64944129 to 64945031 902 + pseudogene predicted gene 14673
Tssr161121 X 65047622 to 65047629 7 + TSS region transcription start site region 161121
Tssr161122 X 65047638 to 65047649 11 + TSS region transcription start site region 161122
Ctag2 X 65047644 to 65049014 1370 + protein coding gene cancer/testis antigen 2
Tssr161123 X 65047671 to 65047683 12 + TSS region transcription start site region 161123
Gm14669 X 65070361 to 65070610 249 - pseudogene predicted gene 14669
Gm14670 X 65086838 to 65087174 336 + pseudogene predicted gene 14670
Tssr161124 X 65437482 to 65437483 1 + TSS region transcription start site region 161124
Tssr161125 X 65517127 to 65517133 6 + TSS region transcription start site region 161125
Gm14668 X 65936349 to 65938473 2124 + pseudogene predicted gene 14668
Gm14671 X 66024044 to 66024305 261 + pseudogene predicted gene 14671
Tssr161126 X 66025485 to 66025496 11 + TSS region transcription start site region 161126
Gm14674 X 66025549 to 66025890 341 + pseudogene predicted gene 14674
DXMit46 X 66047855 to 66048107 252 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 46
Gm30914 X 66147486 to 66169839 22353 + lncRNA gene predicted gene, 30914
4930447F04Rik X 66303361 to 66304224 863 - protein coding gene RIKEN cDNA 4930447F04 gene
Tssr163505 X 66304143 to 66304165 22 - TSS region transcription start site region 163505
Gm23028 X 66448166 to 66448430 264 + unclassified non-coding RNA gene predicted gene, 23028
DXMit87 X 66647307 to 66647452 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 87
Slitrk2 X 66649318 to 66661393 12075 + protein coding gene SLIT and NTRK-like family, member 2
Tssr161127 X 66649376 to 66649394 18 + TSS region transcription start site region 161127
Tssr161128 X 66649436 to 66649447 11 + TSS region transcription start site region 161128
Tssr161129 X 66653003 to 66653031 28 + TSS region transcription start site region 161129
Tssr161130 X 66653037 to 66653045 8 + TSS region transcription start site region 161130
Tssr161131 X 66656911 to 66656916 5 + TSS region transcription start site region 161131
Gm23000 X 66728415 to 66728553 138 + snRNA gene predicted gene, 23000
Gm8310 X 66763676 to 66764771 1095 + pseudogene predicted gene 8310
Mirc50 X 66776757 to 66777332 575 complex/cluster/region microRNA cluster 50, including Mir743a through Mir743b
Mir743 X 66776757 to 66776818 61 - miRNA gene microRNA 743
Mir743b X 66777256 to 66777332 76 - miRNA gene microRNA 743b
Gm14681 X 66778442 to 66778852 410 - pseudogene predicted gene 14681
Tssr161132 X 66778764 to 66778790 26 + TSS region transcription start site region 161132
Tssr163506 X 66778801 to 66778833 32 - TSS region transcription start site region 163506
Mir742 X 66780373 to 66780437 64 - miRNA gene microRNA 742
Mir883a X 66780758 to 66780833 75 - miRNA gene microRNA 883a
Mirc52 X 66780758 to 66789967 9209 complex/cluster/region microRNA cluster 52, including Mir883a through Mir883b
Mir883b X 66789890 to 66789967 77 - miRNA gene microRNA 883b
Mir471 X 66792595 to 66792661 66 - miRNA gene microRNA 471
Mir741 X 66796805 to 66796875 70 - miRNA gene microRNA 741
Mir463 X 66799223 to 66799297 74 - miRNA gene microRNA 463
Mir880 X 66800530 to 66800607 77 - miRNA gene microRNA 880
Mir878 X 66801508 to 66801585 77 - miRNA gene microRNA 878
Mir881 X 66801944 to 66802021 77 - miRNA gene microRNA 881
Mir871 X 66810428 to 66810504 76 - miRNA gene microRNA 871
Mirc51 X 66810428 to 66814025 3597 complex/cluster/region microRNA cluster 51, including Mir871 through Mir470
Mir470 X 66813951 to 66814025 74 - miRNA gene microRNA 470
Mir465d X 66822656 to 66822713 57 - miRNA gene microRNA 465d
Mir465c-1 X 66825955 to 66826035 80 - miRNA gene microRNA 465c-1
Mir465b-1 X 66829202 to 66829280 78 - miRNA gene microRNA 465b-1
Mir465c-2 X 66832517 to 66832597 80 - miRNA gene microRNA 465c-2
Mir465b-2 X 66835764 to 66835842 78 - miRNA gene microRNA 465b-2
Mir465 X 66839052 to 66839125 73 - miRNA gene microRNA 465
Gm30993 X 66850419 to 66852904 2485 - lncRNA gene predicted gene, 30993
Tssr163507 X 66876161 to 66876167 6 - TSS region transcription start site region 163507
DXMit74 X 66938963 to 66939100 137 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 74
Gm6783 X 66969230 to 66970659 1429 - pseudogene predicted gene 6783
Gm14682 X 66972655 to 66973174 519 + pseudogene predicted gene 14682
Gm8312 X 67169613 to 67170230 617 - pseudogene predicted gene 8312
Tssr161133 X 67458187 to 67458198 11 + TSS region transcription start site region 161133
1700036O09Rik X 67458196 to 67459203 1007 + lincRNA gene RIKEN cDNA 1700036O09 gene
Gm26276 X 67595330 to 67595438 108 - snoRNA gene predicted gene, 26276
Gm14687 X 67660090 to 67663856 3766 + pseudogene predicted gene 14687
Gm1140 X 67682900 to 67693562 10662 - protein coding gene predicted gene 1140
Gm14692 X 67695698 to 67706258 10560 + protein coding gene predicted gene 14692
Rpl7a-ps13 X 67726244 to 67726806 562 + pseudogene ribosomal protein L7A, pseudogene 13
4933436I01Rik X 67919864 to 67921450 1586 - protein coding gene RIKEN cDNA 4933436I01 gene
Tssr163508 X 67921430 to 67921438 8 - TSS region transcription start site region 163508
Mirc48 X 67988096 to 67988451 355 complex/cluster/region microRNA cluster 48, including Mir201 through Mir547
Mir201 X 67988096 to 67988161 65 - miRNA gene microRNA 201
Mir547 X 67988374 to 67988451 77 - miRNA gene microRNA 547
Gm14688 X 68006985 to 68007287 302 - pseudogene predicted gene 14688
Mir509 X 68010105 to 68010179 74 - miRNA gene microRNA 509
Tssr163509 X 68044851 to 68044861 10 - TSS region transcription start site region 163509
Gm4910 X 68315952 to 68316317 365 - pseudogene predicted pseudogene 4910
Gm5391 X 68319638 to 68320250 612 - pseudogene predicted gene 5391
Tssr161134 X 68495396 to 68495420 24 + TSS region transcription start site region 161134
Tssr161135 X 68495425 to 68495441 16 + TSS region transcription start site region 161135
Gm6806 X 68503126 to 68504131 1005 + pseudogene predicted gene 6806
Gm22332 X 68563127 to 68563252 125 + snoRNA gene predicted gene, 22332
Gm18440 X 68579684 to 68580574 890 + pseudogene predicted gene, 18440
Gm14701 X 68613793 to 68614140 347 + pseudogene predicted gene 14701
Gm5638 X 68629428 to 68630682 1254 + pseudogene predicted gene 5638
Fmr1os X 68667514 to 68678399 10885 - lincRNA gene fragile X mental retardation 1, opposite strand
Gm27979 X 68676848 to 68676903 55 + unclassified non-coding RNA gene predicted gene, 27979
Cpgi22748 X 68678206 to 68679425 1219 CpG island CpG island 22748
Gm27838 X 68678485 to 68678612 127 + unclassified non-coding RNA gene predicted gene, 27838
Fmr1 X 68678541 to 68717963 39422 + protein coding gene fragile X mental retardation 1
Tssr161136 X 68678541 to 68678554 13 + TSS region transcription start site region 161136
Tssr161137 X 68678571 to 68678589 18 + TSS region transcription start site region 161137
Tssr161138 X 68678609 to 68678620 11 + TSS region transcription start site region 161138
Tssr161139 X 68678626 to 68678639 13 + TSS region transcription start site region 161139
Tssr161140 X 68678642 to 68678667 25 + TSS region transcription start site region 161140
Tssr161141 X 68678676 to 68678691 15 + TSS region transcription start site region 161141
Tssr161142 X 68678712 to 68678721 9 + TSS region transcription start site region 161142
Tssr161143 X 68678784 to 68678801 17 + TSS region transcription start site region 161143
Tssr161144 X 68683941 to 68683954 13 + TSS region transcription start site region 161144
Gm22435 X 68684148 to 68684275 127 - snoRNA gene predicted gene, 22435
Tssr161145 X 68761839 to 68761873 34 + TSS region transcription start site region 161145
Fmr1nb X 68761839 to 68804561 42722 + protein coding gene Fmr1 neighbor
Tssr161146 X 68761875 to 68761887 12 + TSS region transcription start site region 161146
Tssr161147 X 68761890 to 68761901 11 + TSS region transcription start site region 161147
Gm14699 X 68782640 to 68782867 227 - pseudogene predicted gene 14699
Gm14698 X 68821093 to 68825318 4225 + protein coding gene predicted gene 14698
Cpgi22749 X 68821182 to 68821406 224 CpG island CpG island 22749
Gm6812 X 68892375 to 68893053 678 - protein coding gene predicted gene 6812
Gm8344 X 68921157 to 68922012 855 - pseudogene predicted gene 8344
n-R5s7 X 68949564 to 68949684 120 - rRNA gene nuclear encoded rRNA 5S 7
Gm14705 X 69356596 to 69361269 4673 - antisense lncRNA gene predicted gene 14705
Cpgi22750 X 69359830 to 69361241 1411 CpG island CpG island 22750
Aff2 X 69360294 to 69868037 507743 + protein coding gene AF4/FMR2 family, member 2
Tssr161148 X 69360306 to 69360387 81 + TSS region transcription start site region 161148
Tssr161149 X 69360394 to 69360411 17 + TSS region transcription start site region 161149
Tssr161150 X 69390427 to 69390433 6 + TSS region transcription start site region 161150
2610007B07Rik X 69409225 to 69411189 1964 unclassified gene RIKEN cDNA 2610007B07 gene
Tssr161151 X 69415312 to 69415339 27 + TSS region transcription start site region 161151
DXMit110 X 69587863 to 69587995 132 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 110
Gm8172 X 69605496 to 69606245 749 - pseudogene predicted pseudogene 8172
Tssr163510 X 69606287 to 69606293 6 - TSS region transcription start site region 163510
DXMit109 X 69674903 to 69675052 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 109
DXMit194 X 69713595 to 69713714 119 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 194
Tssr5629 X 69853631 to 69853633 2 + TSS region transcription start site region 5629
DXMit142 X 69854278 to 69854604 326 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 142
1700111N16Rik X 69929260 to 70143588 214328 - antisense lncRNA gene RIKEN cDNA 1700111N16 gene
Tssr5630 X 69945298 to 69945308 10 + TSS region transcription start site region 5630
1700020N15Rik X 69945300 to 69945978 678 + protein coding gene RIKEN cDNA 1700020N15 gene
Stol X 133764341 to 66047855 -67716486 heritable phenotypic marker stripy oily