Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:62161937-66392002

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pubt1 X 53323323 to 62836890 9513567 QTL pubertal timing 1
Lvic5 X 53323323 to 63983961 10660638 QTL liver iron content 5
Gm14656 X 62208118 to 62208619 501 + pseudogene predicted gene 14656
Tssr161111 X 62222510 to 62222519 9 + TSS region transcription start site region 161111
Gm16411 X 62255503 to 62256265 762 + pseudogene predicted gene 16411
Tssr161112 X 62283497 to 62283500 3 + TSS region transcription start site region 161112
4933402E13Rik X 62283499 to 62292078 8579 + protein coding gene RIKEN cDNA 4933402E13 gene
Tssr161113 X 62287147 to 62287161 14 + TSS region transcription start site region 161113
Tssr161114 X 62287164 to 62287193 29 + TSS region transcription start site region 161114
Gm14679 X 62372140 to 62372814 674 + pseudogene predicted gene 14679
Tssr161115 X 62372177 to 62372189 12 + TSS region transcription start site region 161115
Tssr161116 X 62382957 to 62382959 2 + TSS region transcription start site region 161116
DXJcs33 X 62466798 to 62467043 245 DNA segment DNA segment, Chr X, John C. Schimenti 33
4931400O07Rik X 62467991 to 62468812 821 + protein coding gene RIKEN cDNA 4931400O07 gene
Tssr161117 X 62487784 to 62487787 3 + TSS region transcription start site region 161117
Tslrn1 X 62510539 to 62527011 16472 - lincRNA gene testis specific long noncoding RNA 1
Tssr163498 X 62516066 to 62516112 46 - TSS region transcription start site region 163498
Gm14678 X 62646725 to 62647206 481 + pseudogene predicted gene 14678
Tssr163499 X 62670258 to 62670285 27 - TSS region transcription start site region 163499
Gm14677 X 62686050 to 62686535 485 + pseudogene predicted gene 14677
Sms-ps X 62775585 to 62776685 1100 - pseudogene spermine synthase, pseudogene
Gm8244 X 62835512 to 62835775 263 - pseudogene predicted gene 8244
Gm6754 X 63034194 to 63035106 912 - pseudogene predicted pseudogene 6754
Gm14659 X 63184686 to 63186526 1840 - pseudogene predicted gene 14659
Tssr161118 X 63315250 to 63315267 17 + TSS region transcription start site region 161118
Gm14657 X 63355347 to 63355648 301 - pseudogene predicted gene 14657
DXMit127 X 63606021 to 63606165 144 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 127
DXMit144 X 63983838 to 63983961 123 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 144
Fcsa4 X 63983838 to 63983961 123 QTL femoral cross-sectional area 4
Gm8260 X 64047554 to 64047906 352 - pseudogene predicted gene 8260
Gm6760 X 64151405 to 64152198 793 - protein coding gene predicted gene 6760
Tssr163500 X 64152101 to 64152111 10 - TSS region transcription start site region 163500
Tssr161119 X 64173545 to 64173558 13 + TSS region transcription start site region 161119
3830417A13Rik X 64173548 to 64178778 5230 + protein coding gene RIKEN cDNA 3830417A13 gene
Slitrk4 X 64264885 to 64276996 12111 - protein coding gene SLIT and NTRK-like family, member 4
Cpgi22746 X 64275653 to 64276098 445 CpG island CpG island 22746
Tssr163501 X 64275929 to 64275938 9 - TSS region transcription start site region 163501
Tssr163502 X 64275945 to 64275956 11 - TSS region transcription start site region 163502
Cpgi22747 X 64276518 to 64277110 592 CpG island CpG island 22747
Tssr163503 X 64276914 to 64276930 16 - TSS region transcription start site region 163503
Tssr163504 X 64276937 to 64277002 65 - TSS region transcription start site region 163504
Gm18022 X 64346290 to 64346841 551 - pseudogene predicted gene, 18022
Tssr5628 X 64483165 to 64483169 4 + TSS region transcription start site region 5628
Gm24598 X 64496584 to 64496657 73 + snoRNA gene predicted gene, 24598
Tssr161120 X 64497003 to 64497010 7 + TSS region transcription start site region 161120
Gm14676 X 64750401 to 64751258 857 - pseudogene predicted gene 14676
DXMit76 X 64757946 to 64758141 195 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 76
Gm26111 X 64800511 to 64800616 105 + snRNA gene predicted gene, 26111
Gm14667 X 64842692 to 64844041 1349 - pseudogene predicted gene 14667
Hstx2 X 64880641 to 69581094 4700453 QTL hybrid sterility, X Chromosome QTL 2
Gm14673 X 64944129 to 64945031 902 + pseudogene predicted gene 14673
Tssr161121 X 65047622 to 65047629 7 + TSS region transcription start site region 161121
Tssr161122 X 65047638 to 65047649 11 + TSS region transcription start site region 161122
Ctag2 X 65047644 to 65049014 1370 + protein coding gene cancer/testis antigen 2
Tssr161123 X 65047671 to 65047683 12 + TSS region transcription start site region 161123
Gm14669 X 65070361 to 65070610 249 - pseudogene predicted gene 14669
Gm14670 X 65086838 to 65087174 336 + pseudogene predicted gene 14670
Tssr161124 X 65437482 to 65437483 1 + TSS region transcription start site region 161124
Tssr161125 X 65517127 to 65517133 6 + TSS region transcription start site region 161125
Gm14668 X 65936349 to 65938473 2124 + pseudogene predicted gene 14668
Gm14671 X 66024044 to 66024305 261 + pseudogene predicted gene 14671
Tssr161126 X 66025485 to 66025496 11 + TSS region transcription start site region 161126
Gm14674 X 66025549 to 66025890 341 + pseudogene predicted gene 14674
DXMit46 X 66047855 to 66048107 252 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 46
Gm30914 X 66147486 to 66169839 22353 + lncRNA gene predicted gene, 30914
4930447F04Rik X 66303361 to 66304224 863 - protein coding gene RIKEN cDNA 4930447F04 gene
Tssr163505 X 66304143 to 66304165 22 - TSS region transcription start site region 163505
Stol X 133764341 to 66047855 -67716486 heritable phenotypic marker stripy oily