Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:6190231-7370398

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33733 X 6092424 to 6229711 137287 + lncRNA gene predicted gene, 33733
Gm46685 X 6238400 to 6241113 2713 + lncRNA gene predicted gene, 46685
Bmp15 X 6314107 to 6320721 6614 - protein coding gene bone morphogenetic protein 15
Tssr162769 X 6320717 to 6320726 9 - TSS region transcription start site region 162769
Tssr5582 X 6346291 to 6346292 1 + TSS region transcription start site region 5582
Cpgi22563 X 6399669 to 6400929 1260 CpG island CpG island 22563
Shroom4 X 6399940 to 6637454 237514 + protein coding gene shroom family member 4
Tssr160356 X 6400027 to 6400061 34 + TSS region transcription start site region 160356
Tssr160357 X 6400076 to 6400109 33 + TSS region transcription start site region 160357
Tssr160358 X 6400111 to 6400144 33 + TSS region transcription start site region 160358
Tssr5583 X 6415697 to 6415712 15 + TSS region transcription start site region 5583
Tssr160359 X 6415725 to 6415730 5 + TSS region transcription start site region 160359
Tssr160360 X 6415736 to 6415747 11 + TSS region transcription start site region 160360
Tssr160361 X 6416941 to 6416955 14 + TSS region transcription start site region 160361
5430428K19Rik X 6452376 to 6574663 122287 - lncRNA gene RIKEN cDNA 5430428K19 gene
DXMit204 X 6488876 to 6489049 173 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 204
DXMit203 X 6502911 to 6503060 149 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 203
Tssr160362 X 6577259 to 6577294 35 + TSS region transcription start site region 160362
Tssr160363 X 6577310 to 6577327 17 + TSS region transcription start site region 160363
Tssr160364 X 6778473 to 6778488 15 + TSS region transcription start site region 160364
Dgkk X 6779306 to 6948363 169057 + protein coding gene diacylglycerol kinase kappa
Cpgi22564 X 6780231 to 6780398 167 CpG island CpG island 22564
Tssr160365 X 6945247 to 6945261 14 + TSS region transcription start site region 160365
Ccnb3 X 6979652 to 7041619 61967 - protein coding gene cyclin B3
Tssr162770 X 7041650 to 7041658 8 - TSS region transcription start site region 162770
Tssr160366 X 7067496 to 7067515 19 + TSS region transcription start site region 160366
Tssr160367 X 7067516 to 7067534 18 + TSS region transcription start site region 160367
Akap4 X 7067519 to 7078609 11090 + protein coding gene A kinase (PRKA) anchor protein 4
Tssr160368 X 7068208 to 7068219 11 + TSS region transcription start site region 160368
DXMit123 X 7125097 to 7125216 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 123
Gm14380 X 7142858 to 7143288 430 - pseudogene predicted gene 14380
Clcn5 X 7153810 to 7319358 165548 - protein coding gene chloride channel, voltage-sensitive 5
Tssr162771 X 7188636 to 7188650 14 - TSS region transcription start site region 162771
Tssr162772 X 7188660 to 7188671 11 - TSS region transcription start site region 162772
Tssr162773 X 7188673 to 7188712 39 - TSS region transcription start site region 162773
Tssr162774 X 7188713 to 7188743 30 - TSS region transcription start site region 162774
Gm26401 X 7229775 to 7229850 75 + snoRNA gene predicted gene, 26401
Tssr162775 X 7235152 to 7235157 5 - TSS region transcription start site region 162775
Mir500 X 7237683 to 7237774 91 - miRNA gene microRNA 500
Tssr162776 X 7237689 to 7237694 5 - TSS region transcription start site region 162776
Mir501 X 7241243 to 7241351 108 - miRNA gene microRNA 501
Mir362 X 7241982 to 7242046 64 - miRNA gene microRNA 362
Mir188 X 7247989 to 7248056 67 - miRNA gene microRNA 188
Mir532 X 7248402 to 7248497 95 - miRNA gene microRNA 532
DXImx35 X 7276832 to 7277076 244 DNA segment DNA segment, Chr X, Immunex 35
DXImx36 X 7312379 to 7312610 231 DNA segment DNA segment, Chr X, Immunex 36
DXImx5 X 7315495 to 7315699 204 DNA segment DNA segment, Chr X, Immunex 5
Cpgi22565 X 7318569 to 7319504 935 CpG island CpG island 22565
Tssr162777 X 7319157 to 7319178 21 - TSS region transcription start site region 162777
Tssr162778 X 7319186 to 7319257 71 - TSS region transcription start site region 162778
Tssr162779 X 7319260 to 7319288 28 - TSS region transcription start site region 162779
Tssr162780 X 7319291 to 7319331 40 - TSS region transcription start site region 162780
DXImx31 X 7321877 to 7322072 195 DNA segment DNA segment, Chr X, Immunex 31
DXImx32 X 7325759 to 7325892 133 DNA segment DNA segment, Chr X, Immunex 32
DXImx34 X 7343074 to 7343236 162 DNA segment DNA segment, Chr X, Immunex 34
DXImx33 X 7344262 to 7344449 187 DNA segment DNA segment, Chr X, Immunex 33
DXMit55 X 7360056 to 7360192 136 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 55
Dbts2 X 151324042 to 7360056 -143963986 QTL diabetes 2