Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:59853677-62513800

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Gm44318 X 59854661 to 59854729 68 + miRNA gene predicted gene, 44318
Gm14887 X 59866700 to 59867222 522 - pseudogene predicted gene 14887
Tssr161065 X 59999436 to 59999495 59 + TSS region transcription start site region 161065
F9 X 59999464 to 60030759 31295 + protein coding gene coagulation factor IX
Tssr161066 X 60030532 to 60030559 27 + TSS region transcription start site region 161066
Gm5637 X 60045111 to 60046229 1118 - pseudogene predicted pseudogene 5637
Tssr163477 X 60045155 to 60045176 21 - TSS region transcription start site region 163477
Tssr161067 X 60050902 to 60050938 36 + TSS region transcription start site region 161067
Gm14891 X 60051001 to 60051596 595 + pseudogene predicted gene 14891
Mcf2 X 60055956 to 60179089 123133 - protein coding gene mcf.2 transforming sequence
Tssr163478 X 60147671 to 60147680 9 - TSS region transcription start site region 163478
Tssr163479 X 60147836 to 60147870 34 - TSS region transcription start site region 163479
Tssr163480 X 60147885 to 60147894 9 - TSS region transcription start site region 163480
Tssr163481 X 60147895 to 60147902 7 - TSS region transcription start site region 163481
Tssr163482 X 60178254 to 60178266 12 - TSS region transcription start site region 163482
Cpgi22740 X 60178564 to 60178866 302 CpG island CpG island 22740
Tssr163483 X 60179140 to 60179181 41 - TSS region transcription start site region 163483
DXMit126 X 60213724 to 60213824 100 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 126
Atp11c X 60223283 to 60404861 181578 - protein coding gene ATPase, class VI, type 11C
Gm22287 X 60257552 to 60257658 106 + snRNA gene predicted gene, 22287
Mir505 X 60394403 to 60394492 89 - miRNA gene microRNA 505
Cpgi22741 X 60403272 to 60405007 1735 CpG island CpG island 22741
Tssr163484 X 60403831 to 60403834 3 - TSS region transcription start site region 163484
Tssr163485 X 60403902 to 60403911 9 - TSS region transcription start site region 163485
Tssr163486 X 60403947 to 60404015 68 - TSS region transcription start site region 163486
Tssr163487 X 60404759 to 60404846 87 - TSS region transcription start site region 163487
Gm8144 X 60426047 to 60426545 498 - pseudogene predicted gene 8144
Tssr163488 X 60426275 to 60426319 44 - TSS region transcription start site region 163488
Tssr163489 X 60426542 to 60426563 21 - TSS region transcription start site region 163489
Gm7073 X 60436052 to 60456195 20143 - protein coding gene predicted gene 7073
Tssr163490 X 60446675 to 60446685 10 - TSS region transcription start site region 163490
Tssr163491 X 60446692 to 60446698 6 - TSS region transcription start site region 163491
Tssr163492 X 60446704 to 60446712 8 - TSS region transcription start site region 163492
Cpgi22742 X 60483384 to 60483608 224 CpG island CpG island 22742
Cpgi22743 X 60547098 to 60548556 1458 CpG island CpG island 22743
Gm715 X 60548019 to 60548849 830 + pseudogene predicted gene 715
Hspa9-ps1 X 60577758 to 60579557 1799 - pseudogene heat shock protein 9, pseudogene 1
Gm14651 X 60614810 to 60615251 441 - pseudogene predicted gene 14651
DXMit92 X 60689879 to 60690024 145 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 92
Gm4909 X 60706270 to 60707063 793 - pseudogene predicted gene 4909
Gm8163 X 60726389 to 60727448 1059 - pseudogene predicted gene 8163
Tssr163493 X 60727489 to 60727501 12 - TSS region transcription start site region 163493
Gm14661 X 60799436 to 60808323 8887 + antisense lncRNA gene predicted gene 14661
Gm14660 X 60818208 to 60818782 574 + pseudogene predicted gene 14660
Sox3 X 60891366 to 60893430 2064 - protein coding gene SRY (sex determining region Y)-box 3
Tssr163494 X 60891702 to 60891719 17 - TSS region transcription start site region 163494
Cpgi22744 X 60891802 to 60894753 2951 CpG island CpG island 22744
Tssr163495 X 60892025 to 60892057 32 - TSS region transcription start site region 163495
Tssr5624 X 60892518 to 60892567 49 - TSS region transcription start site region 5624
Tssr163496 X 60892676 to 60892690 14 - TSS region transcription start site region 163496
Tssr163497 X 60893437 to 60893440 3 - TSS region transcription start site region 163497
Gm14662 X 60893653 to 60898067 4414 + antisense lncRNA gene predicted gene 14662
Gm38438 X 60893764 to 61076111 182347 + lncRNA gene predicted gene, 38438
Gm7076 X 60906712 to 60907167 455 - pseudogene predicted pseudogene 7076
Rpl7l1-ps1 X 60971990 to 60972714 724 - pseudogene ribosomal protein L7-like 1, pseudogene 1
Gm14664 X 61041741 to 61076068 34327 + lincRNA gene predicted gene 14664
Tssr5625 X 61075361 to 61075384 23 + TSS region transcription start site region 5625
Gm14663 X 61090582 to 61091734 1152 + pseudogene predicted gene 14663
Tssr161068 X 61116359 to 61116397 38 + TSS region transcription start site region 161068
C230004F18Rik X 61116378 to 61139460 23082 + lincRNA gene RIKEN cDNA C230004F18 gene
Tssr161069 X 61120295 to 61120310 15 + TSS region transcription start site region 161069
Tssr161070 X 61120488 to 61120499 11 + TSS region transcription start site region 161070
Tssr161071 X 61120503 to 61120523 20 + TSS region transcription start site region 161071
Tssr161072 X 61120822 to 61120843 21 + TSS region transcription start site region 161072
Tssr5626 X 61123542 to 61123546 4 + TSS region transcription start site region 5626
Tssr161073 X 61127951 to 61127960 9 + TSS region transcription start site region 161073
Tssr161074 X 61127966 to 61127979 13 + TSS region transcription start site region 161074
Tssr161075 X 61128000 to 61128009 9 + TSS region transcription start site region 161075
Gm24396 X 61145362 to 61145454 92 + miRNA gene predicted gene, 24396
Tssr161076 X 61181120 to 61181128 8 + TSS region transcription start site region 161076
Tssr161077 X 61183243 to 61183259 16 + TSS region transcription start site region 161077
Tssr161078 X 61183261 to 61183283 22 + TSS region transcription start site region 161078
Tssr161079 X 61183288 to 61183315 27 + TSS region transcription start site region 161079
Tssr161080 X 61183322 to 61183334 12 + TSS region transcription start site region 161080
Tssr161081 X 61183457 to 61183466 9 + TSS region transcription start site region 161081
Tssr161082 X 61183475 to 61183486 11 + TSS region transcription start site region 161082
Tssr161083 X 61183552 to 61183563 11 + TSS region transcription start site region 161083
Tssr161084 X 61183677 to 61183800 123 + TSS region transcription start site region 161084
Tssr161085 X 61183805 to 61183817 12 + TSS region transcription start site region 161085
Tssr161086 X 61183868 to 61183876 8 + TSS region transcription start site region 161086
Tssr161087 X 61183890 to 61183909 19 + TSS region transcription start site region 161087
Tssr161088 X 61183916 to 61183933 17 + TSS region transcription start site region 161088
Tssr161089 X 61183939 to 61183950 11 + TSS region transcription start site region 161089
Cdr1 X 61184005 to 61185558 1553 - protein coding gene cerebellar degeneration related antigen 1
Tssr5627 X 61184006 to 61184022 16 + TSS region transcription start site region 5627
Tssr161090 X 61185408 to 61185426 18 + TSS region transcription start site region 161090
Tssr161091 X 61185517 to 61185563 46 + TSS region transcription start site region 161091
Tssr161092 X 61185631 to 61185646 15 + TSS region transcription start site region 161092
Tssr161093 X 61185676 to 61185694 18 + TSS region transcription start site region 161093
Tssr161094 X 61185700 to 61185734 34 + TSS region transcription start site region 161094
Tssr161095 X 61185741 to 61185769 28 + TSS region transcription start site region 161095
Tssr161096 X 61185780 to 61185796 16 + TSS region transcription start site region 161096
Tssr161097 X 61185848 to 61185875 27 + TSS region transcription start site region 161097
Tssr161098 X 61185878 to 61185889 11 + TSS region transcription start site region 161098
Tssr161099 X 61185994 to 61186009 15 + TSS region transcription start site region 161099
Tssr161100 X 61186037 to 61186053 16 + TSS region transcription start site region 161100
Tssr161101 X 61186058 to 61186066 8 + TSS region transcription start site region 161101
Tssr161102 X 61186130 to 61186146 16 + TSS region transcription start site region 161102
C030023E24Rik X 61191293 to 61194165 2872 + lncRNA gene RIKEN cDNA C030023E24 gene
Gm4988 X 61288157 to 61292488 4331 + protein coding gene predicted gene 4988
Tssr161103 X 61288188 to 61288199 11 + TSS region transcription start site region 161103
Tssr161104 X 61288218 to 61288223 5 + TSS region transcription start site region 161104
Gm14665 X 61389027 to 61389580 553 + pseudogene predicted gene 14665
Gm14666 X 61480453 to 61481295 842 + pseudogene predicted gene 14666
Gm14821 X 61618766 to 61619200 434 - pseudogene predicted gene 14821
Gm14655 X 61620150 to 61620727 577 + pseudogene predicted gene 14655
Cpgi22745 X 61709472 to 61709912 440 CpG island CpG island 22745
Tssr161105 X 61709478 to 61709489 11 + TSS region transcription start site region 161105
Tssr161106 X 61709491 to 61709517 26 + TSS region transcription start site region 161106
Tssr161107 X 61709597 to 61709620 23 + TSS region transcription start site region 161107
Ldoc1 X 61709616 to 61710950 1334 + protein coding gene regulator of NFKB signaling
Tssr161108 X 61785366 to 61785368 2 + TSS region transcription start site region 161108
Gm7327 X 61785381 to 61786032 651 + pseudogene predicted gene 7327
Tssr161109 X 61785741 to 61785774 33 + TSS region transcription start site region 161109
Tssr161110 X 61830197 to 61830210 13 + TSS region transcription start site region 161110
Gm6743 X 61830510 to 61831575 1065 + pseudogene predicted pseudogene 6743
Gm25412 X 61938891 to 61938997 106 + snRNA gene predicted gene, 25412
Gm8215 X 62006873 to 62007862 989 + pseudogene predicted gene 8215
Gm5390 X 62135099 to 62136328 1229 - pseudogene predicted gene 5390
Gm14656 X 62208118 to 62208619 501 + pseudogene predicted gene 14656
Tssr161111 X 62222510 to 62222519 9 + TSS region transcription start site region 161111
Gm16411 X 62255503 to 62256265 762 + pseudogene predicted gene 16411
Tssr161112 X 62283497 to 62283500 3 + TSS region transcription start site region 161112
4933402E13Rik X 62283499 to 62292078 8579 + protein coding gene RIKEN cDNA 4933402E13 gene
Tssr161113 X 62287147 to 62287161 14 + TSS region transcription start site region 161113
Tssr161114 X 62287164 to 62287193 29 + TSS region transcription start site region 161114
Gm14679 X 62372140 to 62372814 674 + pseudogene predicted gene 14679
Tssr161115 X 62372177 to 62372189 12 + TSS region transcription start site region 161115
Tssr161116 X 62382957 to 62382959 2 + TSS region transcription start site region 161116
DXJcs33 X 62466798 to 62467043 245 DNA segment DNA segment, Chr X, John C. Schimenti 33
4931400O07Rik X 62467991 to 62468812 821 + protein coding gene RIKEN cDNA 4931400O07 gene
Tssr161117 X 62487784 to 62487787 3 + TSS region transcription start site region 161117
Tslrn1 X 62510539 to 62527011 16472 - lincRNA gene testis specific long noncoding RNA 1