Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:58789288-60492078

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Gm44333 X 58794731 to 58794837 106 + miRNA gene predicted gene, 44333
Tssr5623 X 58884472 to 58884473 1 - TSS region transcription start site region 5623
4930550L24Rik X 58911461 to 58920304 8843 + protein coding gene RIKEN cDNA 4930550L24 gene
Tssr161061 X 58911472 to 58911488 16 + TSS region transcription start site region 161061
Tssr161062 X 58911503 to 58911513 10 + TSS region transcription start site region 161062
Fgf13 X 59062145 to 59568071 505926 - protein coding gene fibroblast growth factor 13
Tssr163462 X 59062889 to 59062902 13 - TSS region transcription start site region 163462
Gm26351 X 59080891 to 59081122 231 - ribozyme gene predicted gene, 26351
9430082L08Rik X 59092638 to 59093867 1229 unclassified gene RIKEN cDNA 9430082L08 gene
Mir504 X 59097658 to 59097736 78 - miRNA gene microRNA 504
Cpgi22738 X 59133850 to 59134838 988 CpG island CpG island 22738
Tssr163463 X 59134361 to 59134375 14 - TSS region transcription start site region 163463
Tssr163464 X 59134379 to 59134392 13 - TSS region transcription start site region 163464
Tssr163465 X 59134393 to 59134420 27 - TSS region transcription start site region 163465
Tssr163466 X 59134421 to 59134445 24 - TSS region transcription start site region 163466
Tssr163467 X 59134706 to 59134717 11 - TSS region transcription start site region 163467
Tssr163468 X 59134728 to 59134785 57 - TSS region transcription start site region 163468
Tssr163469 X 59166080 to 59166101 21 - TSS region transcription start site region 163469
Gm36570 X 59178629 to 59191608 12979 + lncRNA gene predicted gene, 36570
Tssr161063 X 59179613 to 59179637 24 + TSS region transcription start site region 161063
Gm26487 X 59190773 to 59190866 93 + snRNA gene predicted gene, 26487
Gm14890 X 59196963 to 59197638 675 + pseudogene predicted gene 14890
Gm39518 X 59306935 to 59327018 20083 - lncRNA gene predicted gene, 39518
Rtwq1 X 59431700 to 59431843 143 QTL reduced testis weight QTL 1
DXMit141 X 59431700 to 59431843 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 141
Tssr163470 X 59431826 to 59431830 4 - TSS region transcription start site region 163470
Tssr163471 X 59544045 to 59544048 3 - TSS region transcription start site region 163471
Cpgi22739 X 59566858 to 59568279 1421 CpG island CpG island 22739
Tssr163472 X 59567348 to 59567368 20 - TSS region transcription start site region 163472
Tssr163473 X 59568056 to 59568067 11 - TSS region transcription start site region 163473
Tssr163474 X 59568068 to 59568094 26 - TSS region transcription start site region 163474
Tssr163475 X 59568102 to 59568130 28 - TSS region transcription start site region 163475
Tssr163476 X 59585670 to 59585687 17 - TSS region transcription start site region 163476
Tssr161064 X 59589283 to 59589294 11 + TSS region transcription start site region 161064
Gm36631 X 59589288 to 59692078 102790 + lncRNA gene predicted gene, 36631
DXMit73 X 59656746 to 59656858 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 73
Bdln1 X 59656746 to 59656858 112 QTL body length 1
Gm44500 X 59693450 to 59693549 99 - miRNA gene predicted gene, 44500
Gm44318 X 59854661 to 59854729 68 + miRNA gene predicted gene, 44318
Gm14887 X 59866700 to 59867222 522 - pseudogene predicted gene 14887
Tssr161065 X 59999436 to 59999495 59 + TSS region transcription start site region 161065
F9 X 59999464 to 60030759 31295 + protein coding gene coagulation factor IX
Tssr161066 X 60030532 to 60030559 27 + TSS region transcription start site region 161066
Gm5637 X 60045111 to 60046229 1118 - pseudogene predicted pseudogene 5637
Tssr163477 X 60045155 to 60045176 21 - TSS region transcription start site region 163477
Tssr161067 X 60050902 to 60050938 36 + TSS region transcription start site region 161067
Gm14891 X 60051001 to 60051596 595 + pseudogene predicted gene 14891
Mcf2 X 60055956 to 60179089 123133 - protein coding gene mcf.2 transforming sequence
Tssr163478 X 60147671 to 60147680 9 - TSS region transcription start site region 163478
Tssr163479 X 60147836 to 60147870 34 - TSS region transcription start site region 163479
Tssr163480 X 60147885 to 60147894 9 - TSS region transcription start site region 163480
Tssr163481 X 60147895 to 60147902 7 - TSS region transcription start site region 163481
Tssr163482 X 60178254 to 60178266 12 - TSS region transcription start site region 163482
Cpgi22740 X 60178564 to 60178866 302 CpG island CpG island 22740
Tssr163483 X 60179140 to 60179181 41 - TSS region transcription start site region 163483
DXMit126 X 60213724 to 60213824 100 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 126
Atp11c X 60223283 to 60404861 181578 - protein coding gene ATPase, class VI, type 11C
Gm22287 X 60257552 to 60257658 106 + snRNA gene predicted gene, 22287
Mir505 X 60394403 to 60394492 89 - miRNA gene microRNA 505
Cpgi22741 X 60403272 to 60405007 1735 CpG island CpG island 22741
Tssr163484 X 60403831 to 60403834 3 - TSS region transcription start site region 163484
Tssr163485 X 60403902 to 60403911 9 - TSS region transcription start site region 163485
Tssr163486 X 60403947 to 60404015 68 - TSS region transcription start site region 163486
Tssr163487 X 60404759 to 60404846 87 - TSS region transcription start site region 163487
Gm8144 X 60426047 to 60426545 498 - pseudogene predicted gene 8144
Tssr163488 X 60426275 to 60426319 44 - TSS region transcription start site region 163488
Tssr163489 X 60426542 to 60426563 21 - TSS region transcription start site region 163489
Gm7073 X 60436052 to 60456195 20143 - protein coding gene predicted gene 7073
Tssr163490 X 60446675 to 60446685 10 - TSS region transcription start site region 163490
Tssr163491 X 60446692 to 60446698 6 - TSS region transcription start site region 163491
Tssr163492 X 60446704 to 60446712 8 - TSS region transcription start site region 163492
Cpgi22742 X 60483384 to 60483608 224 CpG island CpG island 22742