Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:57219195-60199656

Filter by:
145 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Cd40lg X 57212143 to 57224042 11899 + protein coding gene CD40 ligand
Tssr161037 X 57223421 to 57223430 9 + TSS region transcription start site region 161037
Tssr161038 X 57223486 to 57223493 7 + TSS region transcription start site region 161038
Tssr161039 X 57223609 to 57223633 24 + TSS region transcription start site region 161039
Tssr161040 X 57223642 to 57223649 7 + TSS region transcription start site region 161040
Tssr161041 X 57223653 to 57223666 13 + TSS region transcription start site region 161041
Tssr161042 X 57223704 to 57223715 11 + TSS region transcription start site region 161042
Tssr161043 X 57223734 to 57223739 5 + TSS region transcription start site region 161043
Tssr161044 X 57223763 to 57223776 13 + TSS region transcription start site region 161044
Tssr161045 X 57223781 to 57223788 7 + TSS region transcription start site region 161045
Tssr163433 X 57223910 to 57223920 10 - TSS region transcription start site region 163433
Tssr161046 X 57223974 to 57223985 11 + TSS region transcription start site region 161046
Tssr161047 X 57224030 to 57224037 7 + TSS region transcription start site region 161047
Tssr161048 X 57224039 to 57224046 7 + TSS region transcription start site region 161048
Tssr161049 X 57224063 to 57224109 46 + TSS region transcription start site region 161049
Tssr161050 X 57224114 to 57224133 19 + TSS region transcription start site region 161050
Tssr163434 X 57224120 to 57224153 33 - TSS region transcription start site region 163434
Tssr161051 X 57224142 to 57224145 3 + TSS region transcription start site region 161051
Tssr161052 X 57224148 to 57224162 14 + TSS region transcription start site region 161052
Tssr163435 X 57224333 to 57224338 5 - TSS region transcription start site region 163435
Arhgef6 X 57231485 to 57338729 107244 - protein coding gene Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
Tssr163436 X 57281591 to 57281596 5 - TSS region transcription start site region 163436
Tssr163437 X 57304837 to 57304888 51 - TSS region transcription start site region 163437
Tssr163438 X 57304889 to 57304898 9 - TSS region transcription start site region 163438
Tssr163439 X 57304978 to 57304987 9 - TSS region transcription start site region 163439
Tssr163440 X 57305034 to 57305045 11 - TSS region transcription start site region 163440
Tssr163441 X 57305066 to 57305110 44 - TSS region transcription start site region 163441
Tssr163442 X 57305150 to 57305172 22 - TSS region transcription start site region 163442
Tssr163443 X 57326148 to 57326206 58 - TSS region transcription start site region 163443
Tssr163444 X 57326227 to 57326249 22 - TSS region transcription start site region 163444
Tssr163445 X 57326273 to 57326312 39 - TSS region transcription start site region 163445
Tssr163446 X 57326593 to 57326682 89 - TSS region transcription start site region 163446
Tssr163447 X 57326686 to 57326712 26 - TSS region transcription start site region 163447
Tssr163448 X 57326755 to 57326779 24 - TSS region transcription start site region 163448
Tssr163449 X 57338499 to 57338512 13 - TSS region transcription start site region 163449
Tssr163450 X 57338513 to 57338583 70 - TSS region transcription start site region 163450
Tssr163451 X 57338598 to 57338610 12 - TSS region transcription start site region 163451
Tssr163452 X 57338737 to 57338781 44 - TSS region transcription start site region 163452
Tssr163453 X 57339235 to 57339240 5 - TSS region transcription start site region 163453
4732460I02Rik X 57376888 to 57381353 4465 unclassified gene RIKEN cDNA 4732460I02 gene
Rbmx X 57383530 to 57393036 9506 - protein coding gene RNA binding motif protein, X chromosome
Snord61 X 57391448 to 57391509 61 - snoRNA gene small nucleolar RNA, C/D box 61
Cpgi22733 X 57392506 to 57392961 455 CpG island CpG island 22733
Tssr163454 X 57392971 to 57392988 17 - TSS region transcription start site region 163454
Tssr163455 X 57393029 to 57393040 11 - TSS region transcription start site region 163455
Tssr161053 X 57409147 to 57409160 13 + TSS region transcription start site region 161053
Gm364 X 57409154 to 57488767 79613 + protein coding gene predicted gene 364
Gpr101 X 57496668 to 57503757 7089 - protein coding gene G protein-coupled receptor 101
Cpgi22734 X 57503364 to 57503944 580 CpG island CpG island 22734
Tssr163456 X 57503733 to 57503741 8 - TSS region transcription start site region 163456
Gm14630 X 57631709 to 57631954 245 - pseudogene predicted gene 14630
Gm5389 X 57659732 to 57660907 1175 + pseudogene predicted gene 5389
Gm14629 X 57670344 to 57670487 143 - pseudogene predicted gene 14629
Gm8107 X 57736730 to 57738540 1810 - pseudogene predicted gene 8107
Gm39516 X 57742398 to 57749951 7553 - lncRNA gene predicted gene, 39516
Gm8111 X 57745317 to 57746303 986 - pseudogene predicted gene 8111
Gm14631 X 57753275 to 57753868 593 - pseudogene predicted gene 14631
Tssr161054 X 57766861 to 57766875 14 + TSS region transcription start site region 161054
AI606141 X 57812770 to 57813179 409 unclassified gene cDNA sequence AI606141
Gm39517 X 57857628 to 57866710 9082 - lncRNA gene predicted gene, 39517
C81412 X 57897192 to 57897518 326 DNA segment expressed sequence C81412
Tssr161055 X 57920054 to 57920061 7 + TSS region transcription start site region 161055
Gm25023 X 57989473 to 57989579 106 + snRNA gene predicted gene, 25023
AY339874 X 57993709 to 57995654 1945 - pseudogene cDNA sequence AY339874
Tssr161056 X 58019586 to 58019604 18 + TSS region transcription start site region 161056
Zic3 X 58022700 to 58041736 19036 + protein coding gene zinc finger protein of the cerebellum 3
Cpgi22735 X 58030252 to 58030789 537 CpG island CpG island 22735
Tssr161057 X 58030622 to 58030636 14 + TSS region transcription start site region 161057
Tssr161058 X 58030650 to 58030661 11 + TSS region transcription start site region 161058
Tssr161059 X 58030898 to 58030906 8 + TSS region transcription start site region 161059
Tssr161060 X 58031003 to 58031018 15 + TSS region transcription start site region 161060
Cpgi22736 X 58031005 to 58032264 1259 CpG island CpG island 22736
Cpgi22737 X 58038153 to 58039253 1100 CpG island CpG island 22737
Tssr163457 X 58038614 to 58038624 10 - TSS region transcription start site region 163457
Tssr163458 X 58038649 to 58038658 9 - TSS region transcription start site region 163458
Tssr163459 X 58039768 to 58039779 11 - TSS region transcription start site region 163459
Tssr163460 X 58039901 to 58039904 3 - TSS region transcription start site region 163460
Gm36466 X 58121145 to 58127580 6435 + lncRNA gene predicted gene, 36466
Gm36522 X 58135157 to 58177146 41989 + lncRNA gene predicted gene, 36522
Gm14649 X 58184163 to 58184486 323 - pseudogene predicted gene 14649
Gm14647 X 58225085 to 58225755 670 + pseudogene predicted gene 14647
Gm25851 X 58357952 to 58358058 106 - snRNA gene predicted gene, 25851
Gm14645 X 58427659 to 58428075 416 - pseudogene predicted gene 14645
44.MMHAP34FRG11 X 58446170 to 58446364 194 DNA segment DNA segment, 44.MMHAP34FRG11
Gm16436 X 58630187 to 58632738 2551 - pseudogene predicted gene 16436
Gm14650 X 58630400 to 58631288 888 - pseudogene predicted gene 14650
Tssr163461 X 58631306 to 58631308 2 - TSS region transcription start site region 163461
Gm7071 X 58709195 to 58709656 461 - pseudogene predicted gene 7071
Gm44333 X 58794731 to 58794837 106 + miRNA gene predicted gene, 44333
Tssr5623 X 58884472 to 58884473 1 - TSS region transcription start site region 5623
4930550L24Rik X 58911461 to 58920304 8843 + protein coding gene RIKEN cDNA 4930550L24 gene
Tssr161061 X 58911472 to 58911488 16 + TSS region transcription start site region 161061
Tssr161062 X 58911503 to 58911513 10 + TSS region transcription start site region 161062
Fgf13 X 59062145 to 59568071 505926 - protein coding gene fibroblast growth factor 13
Tssr163462 X 59062889 to 59062902 13 - TSS region transcription start site region 163462
Gm26351 X 59080891 to 59081122 231 - ribozyme gene predicted gene, 26351
9430082L08Rik X 59092638 to 59093867 1229 unclassified gene RIKEN cDNA 9430082L08 gene
Mir504 X 59097658 to 59097736 78 - miRNA gene microRNA 504
Cpgi22738 X 59133850 to 59134838 988 CpG island CpG island 22738
Tssr163463 X 59134361 to 59134375 14 - TSS region transcription start site region 163463
Tssr163464 X 59134379 to 59134392 13 - TSS region transcription start site region 163464
Tssr163465 X 59134393 to 59134420 27 - TSS region transcription start site region 163465
Tssr163466 X 59134421 to 59134445 24 - TSS region transcription start site region 163466
Tssr163467 X 59134706 to 59134717 11 - TSS region transcription start site region 163467
Tssr163468 X 59134728 to 59134785 57 - TSS region transcription start site region 163468
Tssr163469 X 59166080 to 59166101 21 - TSS region transcription start site region 163469
Gm36570 X 59178629 to 59191608 12979 + lncRNA gene predicted gene, 36570
Tssr161063 X 59179613 to 59179637 24 + TSS region transcription start site region 161063
Gm26487 X 59190773 to 59190866 93 + snRNA gene predicted gene, 26487
Gm14890 X 59196963 to 59197638 675 + pseudogene predicted gene 14890
Gm39518 X 59306935 to 59327018 20083 - lncRNA gene predicted gene, 39518
Rtwq1 X 59431700 to 59431843 143 QTL reduced testis weight QTL 1
DXMit141 X 59431700 to 59431843 143 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 141
Tssr163470 X 59431826 to 59431830 4 - TSS region transcription start site region 163470
Tssr163471 X 59544045 to 59544048 3 - TSS region transcription start site region 163471
Cpgi22739 X 59566858 to 59568279 1421 CpG island CpG island 22739
Tssr163472 X 59567348 to 59567368 20 - TSS region transcription start site region 163472
Tssr163473 X 59568056 to 59568067 11 - TSS region transcription start site region 163473
Tssr163474 X 59568068 to 59568094 26 - TSS region transcription start site region 163474
Tssr163475 X 59568102 to 59568130 28 - TSS region transcription start site region 163475
Tssr163476 X 59585670 to 59585687 17 - TSS region transcription start site region 163476
Tssr161064 X 59589283 to 59589294 11 + TSS region transcription start site region 161064
Gm36631 X 59589288 to 59692078 102790 + lncRNA gene predicted gene, 36631
DXMit73 X 59656746 to 59656858 112 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 73
Bdln1 X 59656746 to 59656858 112 QTL body length 1
Gm44500 X 59693450 to 59693549 99 - miRNA gene predicted gene, 44500
Gm44318 X 59854661 to 59854729 68 + miRNA gene predicted gene, 44318
Gm14887 X 59866700 to 59867222 522 - pseudogene predicted gene 14887
Tssr161065 X 59999436 to 59999495 59 + TSS region transcription start site region 161065
F9 X 59999464 to 60030759 31295 + protein coding gene coagulation factor IX
Tssr161066 X 60030532 to 60030559 27 + TSS region transcription start site region 161066
Gm5637 X 60045111 to 60046229 1118 - pseudogene predicted pseudogene 5637
Tssr163477 X 60045155 to 60045176 21 - TSS region transcription start site region 163477
Tssr161067 X 60050902 to 60050938 36 + TSS region transcription start site region 161067
Gm14891 X 60051001 to 60051596 595 + pseudogene predicted gene 14891
Mcf2 X 60055956 to 60179089 123133 - protein coding gene mcf.2 transforming sequence
Tssr163478 X 60147671 to 60147680 9 - TSS region transcription start site region 163478
Tssr163479 X 60147836 to 60147870 34 - TSS region transcription start site region 163479
Tssr163480 X 60147885 to 60147894 9 - TSS region transcription start site region 163480
Tssr163481 X 60147895 to 60147902 7 - TSS region transcription start site region 163481
Tssr163482 X 60178254 to 60178266 12 - TSS region transcription start site region 163482
Cpgi22740 X 60178564 to 60178866 302 CpG island CpG island 22740
Tssr163483 X 60179140 to 60179181 41 - TSS region transcription start site region 163483