Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:56458081-56738107

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ints6l X 56454857 to 56507843 52986 + protein coding gene integrator complex subunit 6 like
Tssr160990 X 56469278 to 56469300 22 + TSS region transcription start site region 160990
Tssr160991 X 56474208 to 56474212 4 + TSS region transcription start site region 160991
Gm10477 X 56524742 to 56525432 690 + protein coding gene predicted gene 10477
DXMit86 X 56532946 to 56533054 108 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 86
Gm648 X 56543874 to 56549606 5732 - protein coding gene predicted gene 648
Tssr163412 X 56549515 to 56549544 29 - TSS region transcription start site region 163412
Tssr163413 X 56549596 to 56549605 9 - TSS region transcription start site region 163413
Tssr163414 X 56549619 to 56549622 3 - TSS region transcription start site region 163414
Tssr163415 X 56549675 to 56549679 4 - TSS region transcription start site region 163415
Tssr163416 X 56549692 to 56549703 11 - TSS region transcription start site region 163416
Tssr163417 X 56549710 to 56549717 7 - TSS region transcription start site region 163417
Tssr163418 X 56553144 to 56553179 35 - TSS region transcription start site region 163418
Mmgt1 X 56585512 to 56597919 12407 - protein coding gene membrane magnesium transporter 1
n-TAagc2 X 56587539 to 56587611 72 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon AGC)
Mir5116 X 56587852 to 56587914 62 - miRNA gene microRNA 5116
Cpgi22729 X 56597703 to 56598314 611 CpG island CpG island 22729
Tssr163419 X 56597867 to 56597879 12 - TSS region transcription start site region 163419
Tssr163420 X 56597880 to 56597971 91 - TSS region transcription start site region 163420
Tssr163421 X 56598015 to 56598025 10 - TSS region transcription start site region 163421
Tssr163422 X 56598031 to 56598045 14 - TSS region transcription start site region 163422
Tssr163423 X 56598081 to 56598107 26 - TSS region transcription start site region 163423
Gm36239 X 56598192 to 56599656 1464 + lncRNA gene predicted gene, 36239
DXMit108 X 56606440 to 56606588 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 108
Cpgi22730 X 56609737 to 56610358 621 CpG island CpG island 22730
Tssr160992 X 56609751 to 56609797 46 + TSS region transcription start site region 160992
Slc9a6 X 56609757 to 56664230 54473 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 6
Tssr160993 X 56609843 to 56609864 21 + TSS region transcription start site region 160993
Gm39515 X 56682477 to 56684891 2414 + lncRNA gene predicted gene, 39515
Gm36289 X 56720384 to 56723608 3224 - lncRNA gene predicted gene, 36289
Gm26312 X 56725073 to 56725237 164 + snRNA gene predicted gene, 26312
Cpgi22731 X 56731105 to 56732203 1098 CpG island CpG island 22731
Tssr160994 X 56731366 to 56731416 50 + TSS region transcription start site region 160994
Tssr160995 X 56731420 to 56731441 21 + TSS region transcription start site region 160995
Tssr160996 X 56731442 to 56731471 29 + TSS region transcription start site region 160996
Tssr160997 X 56731513 to 56731608 95 + TSS region transcription start site region 160997
Tssr160998 X 56731756 to 56731767 11 + TSS region transcription start site region 160998
Tssr160999 X 56731779 to 56731798 19 + TSS region transcription start site region 160999
Fhl1 X 56731787 to 56793346 61559 + protein coding gene four and a half LIM domains 1
Tssr163424 X 56731873 to 56731875 2 - TSS region transcription start site region 163424
Tssr161000 X 56734811 to 56734817 6 + TSS region transcription start site region 161000