Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:56234619-56864622

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35953 X 56277085 to 56293278 16193 - protein coding gene predicted gene, 35953
Tssr160978 X 56317515 to 56317540 25 + TSS region transcription start site region 160978
1600025M17Rik X 56317608 to 56320664 3056 + lincRNA gene RIKEN cDNA 1600025M17 gene
Tssr160979 X 56317642 to 56317655 13 + TSS region transcription start site region 160979
Tssr160980 X 56322976 to 56322989 13 + TSS region transcription start site region 160980
Gm38625 X 56344120 to 56346215 2095 - lncRNA gene predicted gene, 38625
Cpgi22726 X 56346261 to 56346600 339 CpG island CpG island 22726
Tssr160981 X 56346390 to 56346415 25 + TSS region transcription start site region 160981
Zfp449 X 56346400 to 56365674 19274 + protein coding gene zinc finger protein 449
Gm2155 X 56371620 to 56374790 3170 - antisense lncRNA gene predicted gene 2155
Cpgi22727 X 56374398 to 56375056 658 CpG island CpG island 22727
Tssr160982 X 56374550 to 56374617 67 + TSS region transcription start site region 160982
Smim10l2a X 56374586 to 56377799 3213 + protein coding gene small integral membrane protein 10 like 2A
Tssr160983 X 56374805 to 56374834 29 + TSS region transcription start site region 160983
6530403M18Rik X 56381198 to 56382576 1378 unclassified non-coding RNA gene RIKEN cDNA 6530403M18 gene
Gm39514 X 56389268 to 56395835 6567 + lncRNA gene predicted gene, 39514
DXMit193 X 56432713 to 56432836 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 193
Gm14633 X 56447927 to 56448357 430 - pseudogene predicted gene 14633
Gm2174 X 56447965 to 56448366 401 + protein coding gene predicted gene 2174
Tssr160984 X 56454814 to 56454825 11 + TSS region transcription start site region 160984
Tssr160985 X 56454836 to 56454849 13 + TSS region transcription start site region 160985
Tssr160986 X 56454851 to 56454869 18 + TSS region transcription start site region 160986
Ints6l X 56454857 to 56507843 52986 + protein coding gene integrator complex subunit 6 like
Tssr160987 X 56454871 to 56454887 16 + TSS region transcription start site region 160987
Tssr160988 X 56454919 to 56454928 9 + TSS region transcription start site region 160988
Cpgi22728 X 56455229 to 56456174 945 CpG island CpG island 22728
Tssr160989 X 56455459 to 56455474 15 + TSS region transcription start site region 160989
Tssr160990 X 56469278 to 56469300 22 + TSS region transcription start site region 160990
Tssr160991 X 56474208 to 56474212 4 + TSS region transcription start site region 160991
Gm10477 X 56524742 to 56525432 690 + protein coding gene predicted gene 10477
DXMit86 X 56532946 to 56533054 108 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 86
Gm648 X 56543874 to 56549606 5732 - protein coding gene predicted gene 648
Tssr163412 X 56549515 to 56549544 29 - TSS region transcription start site region 163412
Tssr163413 X 56549596 to 56549605 9 - TSS region transcription start site region 163413
Tssr163414 X 56549619 to 56549622 3 - TSS region transcription start site region 163414
Tssr163415 X 56549675 to 56549679 4 - TSS region transcription start site region 163415
Tssr163416 X 56549692 to 56549703 11 - TSS region transcription start site region 163416
Tssr163417 X 56549710 to 56549717 7 - TSS region transcription start site region 163417
Tssr163418 X 56553144 to 56553179 35 - TSS region transcription start site region 163418
Mmgt1 X 56585512 to 56597919 12407 - protein coding gene membrane magnesium transporter 1
n-TAagc2 X 56587539 to 56587611 72 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon AGC)
Mir5116 X 56587852 to 56587914 62 - miRNA gene microRNA 5116
Cpgi22729 X 56597703 to 56598314 611 CpG island CpG island 22729
Tssr163419 X 56597867 to 56597879 12 - TSS region transcription start site region 163419
Tssr163420 X 56597880 to 56597971 91 - TSS region transcription start site region 163420
Tssr163421 X 56598015 to 56598025 10 - TSS region transcription start site region 163421
Tssr163422 X 56598031 to 56598045 14 - TSS region transcription start site region 163422
Tssr163423 X 56598081 to 56598107 26 - TSS region transcription start site region 163423
Gm36239 X 56598192 to 56599656 1464 + lncRNA gene predicted gene, 36239
DXMit108 X 56606440 to 56606588 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 108
Cpgi22730 X 56609737 to 56610358 621 CpG island CpG island 22730
Tssr160992 X 56609751 to 56609797 46 + TSS region transcription start site region 160992
Slc9a6 X 56609757 to 56664230 54473 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 6
Tssr160993 X 56609843 to 56609864 21 + TSS region transcription start site region 160993
Gm39515 X 56682477 to 56684891 2414 + lncRNA gene predicted gene, 39515
Gm36289 X 56720384 to 56723608 3224 - lncRNA gene predicted gene, 36289
Gm26312 X 56725073 to 56725237 164 + snRNA gene predicted gene, 26312
Cpgi22731 X 56731105 to 56732203 1098 CpG island CpG island 22731
Tssr160994 X 56731366 to 56731416 50 + TSS region transcription start site region 160994
Tssr160995 X 56731420 to 56731441 21 + TSS region transcription start site region 160995
Tssr160996 X 56731442 to 56731471 29 + TSS region transcription start site region 160996
Tssr160997 X 56731513 to 56731608 95 + TSS region transcription start site region 160997
Tssr160998 X 56731756 to 56731767 11 + TSS region transcription start site region 160998
Tssr160999 X 56731779 to 56731798 19 + TSS region transcription start site region 160999
Fhl1 X 56731787 to 56793346 61559 + protein coding gene four and a half LIM domains 1
Tssr163424 X 56731873 to 56731875 2 - TSS region transcription start site region 163424
Tssr161000 X 56734811 to 56734817 6 + TSS region transcription start site region 161000
Gm23258 X 56750010 to 56750115 105 + snRNA gene predicted gene, 23258
Tssr161001 X 56779549 to 56779565 16 + TSS region transcription start site region 161001
Tssr161002 X 56779651 to 56779656 5 + TSS region transcription start site region 161002
Tssr161003 X 56779676 to 56779695 19 + TSS region transcription start site region 161003
Tssr161004 X 56779699 to 56779718 19 + TSS region transcription start site region 161004
Tssr161005 X 56786535 to 56786564 29 + TSS region transcription start site region 161005
Tssr161006 X 56787045 to 56787049 4 + TSS region transcription start site region 161006
Tssr161007 X 56787701 to 56787715 14 + TSS region transcription start site region 161007
Tssr161008 X 56787801 to 56787812 11 + TSS region transcription start site region 161008
Tssr161009 X 56787874 to 56787883 9 + TSS region transcription start site region 161009
Tssr161010 X 56792075 to 56792107 32 + TSS region transcription start site region 161010
Tssr161011 X 56792582 to 56792607 25 + TSS region transcription start site region 161011
Tssr161012 X 56792666 to 56792679 13 + TSS region transcription start site region 161012
Tssr161013 X 56792728 to 56792760 32 + TSS region transcription start site region 161013
Map7d3 X 56797858 to 56822326 24468 - protein coding gene MAP7 domain containing 3
Tssr163425 X 56822308 to 56822346 38 - TSS region transcription start site region 163425
Tssr163426 X 56822505 to 56822508 3 - TSS region transcription start site region 163426
Tssr163427 X 56853817 to 56853819 2 - TSS region transcription start site region 163427