Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:56172858-57447326

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm773 X 56189827 to 56212881 23054 - protein coding gene predicted gene 773
Gm14627 X 56190932 to 56191498 566 + pseudogene predicted gene 14627
Tssr163411 X 56212903 to 56212915 12 - TSS region transcription start site region 163411
Gm2120 X 56214881 to 56215397 516 + pseudogene predicted gene 2120
Gm35893 X 56223150 to 56226516 3366 - lncRNA gene predicted gene, 35893
Gm35953 X 56277085 to 56293278 16193 - protein coding gene predicted gene, 35953
Tssr160978 X 56317515 to 56317540 25 + TSS region transcription start site region 160978
1600025M17Rik X 56317608 to 56320664 3056 + lincRNA gene RIKEN cDNA 1600025M17 gene
Tssr160979 X 56317642 to 56317655 13 + TSS region transcription start site region 160979
Tssr160980 X 56322976 to 56322989 13 + TSS region transcription start site region 160980
Gm38625 X 56344120 to 56346215 2095 - lncRNA gene predicted gene, 38625
Cpgi22726 X 56346261 to 56346600 339 CpG island CpG island 22726
Tssr160981 X 56346390 to 56346415 25 + TSS region transcription start site region 160981
Zfp449 X 56346400 to 56365674 19274 + protein coding gene zinc finger protein 449
Gm2155 X 56371620 to 56374790 3170 - antisense lncRNA gene predicted gene 2155
Cpgi22727 X 56374398 to 56375056 658 CpG island CpG island 22727
Tssr160982 X 56374550 to 56374617 67 + TSS region transcription start site region 160982
Smim10l2a X 56374586 to 56377799 3213 + protein coding gene small integral membrane protein 10 like 2A
Tssr160983 X 56374805 to 56374834 29 + TSS region transcription start site region 160983
6530403M18Rik X 56381198 to 56382576 1378 unclassified non-coding RNA gene RIKEN cDNA 6530403M18 gene
Gm39514 X 56389268 to 56395835 6567 + lncRNA gene predicted gene, 39514
DXMit193 X 56432713 to 56432836 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 193
Gm14633 X 56447927 to 56448357 430 - pseudogene predicted gene 14633
Gm2174 X 56447965 to 56448366 401 + protein coding gene predicted gene 2174
Tssr160984 X 56454814 to 56454825 11 + TSS region transcription start site region 160984
Tssr160985 X 56454836 to 56454849 13 + TSS region transcription start site region 160985
Tssr160986 X 56454851 to 56454869 18 + TSS region transcription start site region 160986
Ints6l X 56454857 to 56507843 52986 + protein coding gene integrator complex subunit 6 like
Tssr160987 X 56454871 to 56454887 16 + TSS region transcription start site region 160987
Tssr160988 X 56454919 to 56454928 9 + TSS region transcription start site region 160988
Cpgi22728 X 56455229 to 56456174 945 CpG island CpG island 22728
Tssr160989 X 56455459 to 56455474 15 + TSS region transcription start site region 160989
Tssr160990 X 56469278 to 56469300 22 + TSS region transcription start site region 160990
Tssr160991 X 56474208 to 56474212 4 + TSS region transcription start site region 160991
Gm10477 X 56524742 to 56525432 690 + protein coding gene predicted gene 10477
DXMit86 X 56532946 to 56533054 108 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 86
Gm648 X 56543874 to 56549606 5732 - protein coding gene predicted gene 648
Tssr163412 X 56549515 to 56549544 29 - TSS region transcription start site region 163412
Tssr163413 X 56549596 to 56549605 9 - TSS region transcription start site region 163413
Tssr163414 X 56549619 to 56549622 3 - TSS region transcription start site region 163414
Tssr163415 X 56549675 to 56549679 4 - TSS region transcription start site region 163415
Tssr163416 X 56549692 to 56549703 11 - TSS region transcription start site region 163416
Tssr163417 X 56549710 to 56549717 7 - TSS region transcription start site region 163417
Tssr163418 X 56553144 to 56553179 35 - TSS region transcription start site region 163418
Mmgt1 X 56585512 to 56597919 12407 - protein coding gene membrane magnesium transporter 1
n-TAagc2 X 56587539 to 56587611 72 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon AGC)
Mir5116 X 56587852 to 56587914 62 - miRNA gene microRNA 5116
Cpgi22729 X 56597703 to 56598314 611 CpG island CpG island 22729
Tssr163419 X 56597867 to 56597879 12 - TSS region transcription start site region 163419
Tssr163420 X 56597880 to 56597971 91 - TSS region transcription start site region 163420
Tssr163421 X 56598015 to 56598025 10 - TSS region transcription start site region 163421
Tssr163422 X 56598031 to 56598045 14 - TSS region transcription start site region 163422
Tssr163423 X 56598081 to 56598107 26 - TSS region transcription start site region 163423
Gm36239 X 56598192 to 56599656 1464 + lncRNA gene predicted gene, 36239
DXMit108 X 56606440 to 56606588 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 108
Cpgi22730 X 56609737 to 56610358 621 CpG island CpG island 22730
Tssr160992 X 56609751 to 56609797 46 + TSS region transcription start site region 160992
Slc9a6 X 56609757 to 56664230 54473 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 6
Tssr160993 X 56609843 to 56609864 21 + TSS region transcription start site region 160993
Gm39515 X 56682477 to 56684891 2414 + lncRNA gene predicted gene, 39515
Gm36289 X 56720384 to 56723608 3224 - lncRNA gene predicted gene, 36289
Gm26312 X 56725073 to 56725237 164 + snRNA gene predicted gene, 26312
Cpgi22731 X 56731105 to 56732203 1098 CpG island CpG island 22731
Tssr160994 X 56731366 to 56731416 50 + TSS region transcription start site region 160994
Tssr160995 X 56731420 to 56731441 21 + TSS region transcription start site region 160995
Tssr160996 X 56731442 to 56731471 29 + TSS region transcription start site region 160996
Tssr160997 X 56731513 to 56731608 95 + TSS region transcription start site region 160997
Tssr160998 X 56731756 to 56731767 11 + TSS region transcription start site region 160998
Tssr160999 X 56731779 to 56731798 19 + TSS region transcription start site region 160999
Fhl1 X 56731787 to 56793346 61559 + protein coding gene four and a half LIM domains 1
Tssr163424 X 56731873 to 56731875 2 - TSS region transcription start site region 163424
Tssr161000 X 56734811 to 56734817 6 + TSS region transcription start site region 161000
Gm23258 X 56750010 to 56750115 105 + snRNA gene predicted gene, 23258
Tssr161001 X 56779549 to 56779565 16 + TSS region transcription start site region 161001
Tssr161002 X 56779651 to 56779656 5 + TSS region transcription start site region 161002
Tssr161003 X 56779676 to 56779695 19 + TSS region transcription start site region 161003
Tssr161004 X 56779699 to 56779718 19 + TSS region transcription start site region 161004
Tssr161005 X 56786535 to 56786564 29 + TSS region transcription start site region 161005
Tssr161006 X 56787045 to 56787049 4 + TSS region transcription start site region 161006
Tssr161007 X 56787701 to 56787715 14 + TSS region transcription start site region 161007
Tssr161008 X 56787801 to 56787812 11 + TSS region transcription start site region 161008
Tssr161009 X 56787874 to 56787883 9 + TSS region transcription start site region 161009
Tssr161010 X 56792075 to 56792107 32 + TSS region transcription start site region 161010
Tssr161011 X 56792582 to 56792607 25 + TSS region transcription start site region 161011
Tssr161012 X 56792666 to 56792679 13 + TSS region transcription start site region 161012
Tssr161013 X 56792728 to 56792760 32 + TSS region transcription start site region 161013
Map7d3 X 56797858 to 56822326 24468 - protein coding gene MAP7 domain containing 3
Tssr163425 X 56822308 to 56822346 38 - TSS region transcription start site region 163425
Tssr163426 X 56822505 to 56822508 3 - TSS region transcription start site region 163426
Tssr163427 X 56853817 to 56853819 2 - TSS region transcription start site region 163427
Adgrg4 X 56894234 to 56980270 86036 + protein coding gene adhesion G protein-coupled receptor G4
DXMit209 X 56896278 to 56896398 120 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 209
Brs3 X 57043074 to 57048758 5684 + protein coding gene bombesin-like receptor 3
Cpgi22732 X 57053140 to 57054130 990 CpG island CpG island 22732
Tssr5622 X 57053281 to 57053301 20 + TSS region transcription start site region 5622
Tssr161014 X 57053549 to 57053597 48 + TSS region transcription start site region 161014
Htatsf1 X 57053583 to 57067183 13600 + protein coding gene HIV TAT specific factor 1
Tssr161015 X 57053849 to 57053868 19 + TSS region transcription start site region 161015
Tssr161016 X 57053880 to 57053908 28 + TSS region transcription start site region 161016
Tssr161017 X 57066017 to 57066028 11 + TSS region transcription start site region 161017
Tssr161018 X 57066031 to 57066047 16 + TSS region transcription start site region 161018
Tssr161019 X 57066164 to 57066179 15 + TSS region transcription start site region 161019
Tssr161020 X 57066301 to 57066314 13 + TSS region transcription start site region 161020
Tssr161021 X 57066495 to 57066510 15 + TSS region transcription start site region 161021
DXMit75 X 57068354 to 57068454 100 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 75
Pbwg21 X 57068354 to 57068454 100 QTL postnatal body weight growth 21
Pbwg7 X 57068354 to 57068454 100 QTL postnatal body weight growth 7
Vgll1 X 57088106 to 57106540 18434 + protein coding gene vestigial like family member 1
Tssr163428 X 57176870 to 57176878 8 - TSS region transcription start site region 163428
Tssr161022 X 57179783 to 57179790 7 + TSS region transcription start site region 161022
Tssr163429 X 57181479 to 57181486 7 - TSS region transcription start site region 163429
Tssr163430 X 57182629 to 57182636 7 - TSS region transcription start site region 163430
Tssr163431 X 57188920 to 57188926 6 - TSS region transcription start site region 163431
Tssr161023 X 57196386 to 57196411 25 + TSS region transcription start site region 161023
Tssr161024 X 57196588 to 57196596 8 + TSS region transcription start site region 161024
Tssr163432 X 57200396 to 57200425 29 - TSS region transcription start site region 163432
Tssr161025 X 57200510 to 57200519 9 + TSS region transcription start site region 161025
Tssr161026 X 57200532 to 57200546 14 + TSS region transcription start site region 161026
Tssr161027 X 57200557 to 57200571 14 + TSS region transcription start site region 161027
Tssr161028 X 57200613 to 57200633 20 + TSS region transcription start site region 161028
Gm14718 X 57200643 to 57204378 3735 + antisense lncRNA gene predicted gene 14718
Tssr161029 X 57212044 to 57212055 11 + TSS region transcription start site region 161029
Tssr161030 X 57212058 to 57212069 11 + TSS region transcription start site region 161030
Tssr161031 X 57212077 to 57212097 20 + TSS region transcription start site region 161031
Tssr161032 X 57212110 to 57212141 31 + TSS region transcription start site region 161032
Cd40lg X 57212143 to 57224042 11899 + protein coding gene CD40 ligand
Tssr161033 X 57212167 to 57212173 6 + TSS region transcription start site region 161033
Tssr161034 X 57212185 to 57212186 1 + TSS region transcription start site region 161034
Tssr161035 X 57213401 to 57213431 30 + TSS region transcription start site region 161035
Tssr161036 X 57214039 to 57214050 11 + TSS region transcription start site region 161036
Tssr161037 X 57223421 to 57223430 9 + TSS region transcription start site region 161037
Tssr161038 X 57223486 to 57223493 7 + TSS region transcription start site region 161038
Tssr161039 X 57223609 to 57223633 24 + TSS region transcription start site region 161039
Tssr161040 X 57223642 to 57223649 7 + TSS region transcription start site region 161040
Tssr161041 X 57223653 to 57223666 13 + TSS region transcription start site region 161041
Tssr161042 X 57223704 to 57223715 11 + TSS region transcription start site region 161042
Tssr161043 X 57223734 to 57223739 5 + TSS region transcription start site region 161043
Tssr161044 X 57223763 to 57223776 13 + TSS region transcription start site region 161044
Tssr161045 X 57223781 to 57223788 7 + TSS region transcription start site region 161045
Tssr163433 X 57223910 to 57223920 10 - TSS region transcription start site region 163433
Tssr161046 X 57223974 to 57223985 11 + TSS region transcription start site region 161046
Tssr161047 X 57224030 to 57224037 7 + TSS region transcription start site region 161047
Tssr161048 X 57224039 to 57224046 7 + TSS region transcription start site region 161048
Tssr161049 X 57224063 to 57224109 46 + TSS region transcription start site region 161049
Tssr161050 X 57224114 to 57224133 19 + TSS region transcription start site region 161050
Tssr163434 X 57224120 to 57224153 33 - TSS region transcription start site region 163434
Tssr161051 X 57224142 to 57224145 3 + TSS region transcription start site region 161051
Tssr161052 X 57224148 to 57224162 14 + TSS region transcription start site region 161052
Tssr163435 X 57224333 to 57224338 5 - TSS region transcription start site region 163435
Arhgef6 X 57231485 to 57338729 107244 - protein coding gene Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
Tssr163436 X 57281591 to 57281596 5 - TSS region transcription start site region 163436
Tssr163437 X 57304837 to 57304888 51 - TSS region transcription start site region 163437
Tssr163438 X 57304889 to 57304898 9 - TSS region transcription start site region 163438
Tssr163439 X 57304978 to 57304987 9 - TSS region transcription start site region 163439
Tssr163440 X 57305034 to 57305045 11 - TSS region transcription start site region 163440
Tssr163441 X 57305066 to 57305110 44 - TSS region transcription start site region 163441
Tssr163442 X 57305150 to 57305172 22 - TSS region transcription start site region 163442
Tssr163443 X 57326148 to 57326206 58 - TSS region transcription start site region 163443
Tssr163444 X 57326227 to 57326249 22 - TSS region transcription start site region 163444
Tssr163445 X 57326273 to 57326312 39 - TSS region transcription start site region 163445
Tssr163446 X 57326593 to 57326682 89 - TSS region transcription start site region 163446
Tssr163447 X 57326686 to 57326712 26 - TSS region transcription start site region 163447
Tssr163448 X 57326755 to 57326779 24 - TSS region transcription start site region 163448
Tssr163449 X 57338499 to 57338512 13 - TSS region transcription start site region 163449
Tssr163450 X 57338513 to 57338583 70 - TSS region transcription start site region 163450
Tssr163451 X 57338598 to 57338610 12 - TSS region transcription start site region 163451
Tssr163452 X 57338737 to 57338781 44 - TSS region transcription start site region 163452
Tssr163453 X 57339235 to 57339240 5 - TSS region transcription start site region 163453
4732460I02Rik X 57376888 to 57381353 4465 unclassified gene RIKEN cDNA 4732460I02 gene
Rbmx X 57383530 to 57393036 9506 - protein coding gene RNA binding motif protein, X chromosome
Snord61 X 57391448 to 57391509 61 - snoRNA gene small nucleolar RNA, C/D box 61
Cpgi22733 X 57392506 to 57392961 455 CpG island CpG island 22733
Tssr163454 X 57392971 to 57392988 17 - TSS region transcription start site region 163454
Tssr163455 X 57393029 to 57393040 11 - TSS region transcription start site region 163455
Tssr161053 X 57409147 to 57409160 13 + TSS region transcription start site region 161053
Gm364 X 57409154 to 57488767 79613 + protein coding gene predicted gene 364