Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:53286321-54266332

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw19 X 47288043 to 53323450 6035407 QTL body weight QTL 19
Fam122c X 53273424 to 53331185 57761 + protein coding gene family with sequence similarity 122, member C
Gm23718 X 53306177 to 53306483 306 + unclassified non-coding RNA gene predicted gene, 23718
Gm14585 X 53314533 to 53315166 633 + pseudogene predicted gene 14585
Pubt1 X 53323323 to 62836890 9513567 QTL pubertal timing 1
DXMit68 X 53323323 to 53323450 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 68
Lvic5 X 53323323 to 63983961 10660638 QTL liver iron content 5
Mospd1 X 53344598 to 53370502 25904 - protein coding gene motile sperm domain containing 1
Tssr163394 X 53370442 to 53370466 24 - TSS region transcription start site region 163394
Tssr163395 X 53370470 to 53370501 31 - TSS region transcription start site region 163395
Tssr163396 X 53370513 to 53370528 15 - TSS region transcription start site region 163396
Tssr163397 X 53370553 to 53370564 11 - TSS region transcription start site region 163397
Gm14584 X 53418331 to 53418967 636 + pseudogene predicted gene 14584
Etd X 53434918 to 53443576 8658 + protein coding gene embryonic testis differentiation
Tssr160964 X 53434944 to 53434949 5 + TSS region transcription start site region 160964
Tssr160965 X 53434952 to 53434972 20 + TSS region transcription start site region 160965
Tssr160966 X 53434989 to 53435015 26 + TSS region transcription start site region 160966
Gm36046 X 53459784 to 53464672 4888 + lncRNA gene predicted gene, 36046
Tssr5621 X 53460314 to 53460325 11 + TSS region transcription start site region 5621
Gm14597 X 53577073 to 53580003 2930 - protein coding gene predicted gene 14597
Tssr160967 X 53607892 to 53607916 24 + TSS region transcription start site region 160967
Tssr160968 X 53607918 to 53607954 36 + TSS region transcription start site region 160968
Tssr160969 X 53607959 to 53607978 19 + TSS region transcription start site region 160969
Tssr160970 X 53607987 to 53608015 28 + TSS region transcription start site region 160970
Rtl8c X 53608032 to 53608432 400 + protein coding gene retrotransposon Gag like 8C
Gm14592 X 53623291 to 53623840 549 + pseudogene predicted gene 14592
Gm14600 X 53633336 to 53633965 629 + pseudogene predicted gene 14600
Rtl8a X 53642488 to 53643682 1194 - protein coding gene retrotransposon Gag like 8A
Tssr163398 X 53643717 to 53643769 52 - TSS region transcription start site region 163398
Tssr163399 X 53643771 to 53643778 7 - TSS region transcription start site region 163399
Rtl8b X 53669177 to 53670408 1231 - protein coding gene retrotransposon Gag like 8B
Tssr163400 X 53670397 to 53670456 59 - TSS region transcription start site region 163400
Tssr163401 X 53670508 to 53670540 32 - TSS region transcription start site region 163401
4933416I08Rik X 53686637 to 53690919 4282 + pseudogene RIKEN cDNA 4933416I08 gene
Tssr160971 X 53688075 to 53688110 35 + TSS region transcription start site region 160971
AW822252 X 53696922 to 53716578 19656 - lincRNA gene expressed sequence AW822252
DXMit167 X 53713482 to 53713603 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 167
Cpgi22721 X 53716343 to 53716856 513 CpG island CpG island 22721
Tssr160972 X 53724639 to 53724644 5 + TSS region transcription start site region 160972
Tssr160973 X 53724795 to 53724815 20 + TSS region transcription start site region 160973
4930502E18Rik X 53724826 to 53738441 13615 + protein coding gene RIKEN cDNA 4930502E18 gene
Tssr160974 X 53724836 to 53724844 8 + TSS region transcription start site region 160974
Tssr160975 X 53724894 to 53724897 3 + TSS region transcription start site region 160975
1700013H16Rik X 53742901 to 53757831 14930 - protein coding gene RIKEN cDNA 1700013H16 gene
Cpgi22722 X 53756732 to 53757120 388 CpG island CpG island 22722
Tssr163402 X 53757836 to 53757849 13 - TSS region transcription start site region 163402
Gm6025 X 53762815 to 53763015 200 + pseudogene predicted pseudogene 6025
Tssr160976 X 53772801 to 53772816 15 + TSS region transcription start site region 160976
Gm14593 X 53772836 to 53773129 293 + pseudogene predicted gene 14593
Zfp36l3 X 53774048 to 53776394 2346 - protein coding gene zinc finger protein 36, C3H type-like 3
Tssr163403 X 53775477 to 53775488 11 - TSS region transcription start site region 163403
Cpgi22723 X 53775722 to 53775976 254 CpG island CpG island 22723
Tssr163404 X 53776295 to 53776315 20 - TSS region transcription start site region 163404
Tssr163405 X 53776321 to 53776332 11 - TSS region transcription start site region 163405
Tssr163406 X 53776355 to 53776377 22 - TSS region transcription start site region 163406
Tssr163407 X 53776392 to 53776401 9 - TSS region transcription start site region 163407
Tssr163408 X 53776403 to 53776407 4 - TSS region transcription start site region 163408
Xlr X 53777118 to 53797706 20588 - protein coding gene X-linked lymphocyte-regulated
Tssr163409 X 53778350 to 53778386 36 - TSS region transcription start site region 163409
Gm14599 X 53816129 to 53820026 3897 - pseudogene predicted gene 14599
Gm38663 X 53829150 to 53832192 3042 + pseudogene predicted gene, 38663
Gm14589 X 53844121 to 53844847 726 + pseudogene predicted gene 14589
Gm31171 X 53855069 to 53856216 1147 - lncRNA gene predicted gene, 31171
Atf1-ps X 53883611 to 53884420 809 - pseudogene activating transcription factor 1, pseudogene
Gm14591 X 53965772 to 53966674 902 - pseudogene predicted gene 14591
Gm15482 X 53969437 to 53975000 5563 - unclassified non-coding RNA gene predicted gene 15482
Gm14601 X 53974554 to 53974789 235 - pseudogene predicted gene 14601
Cpgi22724 X 53974612 to 53974987 375 CpG island CpG island 22724
Cpgi22725 X 53975853 to 53976056 203 CpG island CpG island 22725
Gm46673 X 54081353 to 54081729 376 + pseudogene predicted gene, 46673
Gm14644 X 54094373 to 54096289 1916 + pseudogene predicted gene 14644
Gm22550 X 54118995 to 54119101 106 + snRNA gene predicted gene, 22550
Gm16428 X 54134885 to 54144175 9290 + pseudogene predicted gene 16428
Gm7916 X 54174779 to 54202199 27420 + pseudogene predicted gene 7916
Gm14598 X 54237715 to 54253212 15497 + pseudogene predicted gene 14598