Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:5320435-10860439

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694 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5924 X 5338858 to 5340457 1599 + pseudogene predicted gene 5924
Gm14369 X 5391640 to 5391924 284 + pseudogene predicted gene 14369
Gm14363 X 5399249 to 5402129 2880 - pseudogene predicted gene 14363
Mycs X 5466904 to 5469265 2361 - protein coding gene myc-like oncogene, s-myc protein
Cpgi22558 X 5467893 to 5468744 851 CpG island CpG island 22558
Cpgi22559 X 5558151 to 5558307 156 CpG island CpG island 22559
Gm14366 X 5608572 to 5609151 579 - pseudogene predicted gene 14366
Gm14375 X 5665372 to 5666226 854 + pseudogene predicted gene 14375
Btbd35f7 X 5669067 to 5671026 1959 + protein coding gene BTB domain containing 35, family member 7
Gm14373 X 5699730 to 5701872 2142 - pseudogene predicted gene 14373
Gm39489 X 5730162 to 5749677 19515 - lncRNA gene predicted gene, 39489
Tssr5581 X 5824088 to 5824090 2 + TSS region transcription start site region 5581
Gm14452 X 5859765 to 5861537 1772 + pseudogene predicted gene 14452
Gm14451 X 5869686 to 5871458 1772 - pseudogene predicted gene 14451
Gm14448 X 5885743 to 5885952 209 - pseudogene predicted gene 14448
Tssr160355 X 5984669 to 5984710 41 + TSS region transcription start site region 160355
Gm14450 X 5984772 to 5985011 239 + pseudogene predicted gene 14450
Gm26618 X 6027056 to 6092269 65213 - sense overlapping lncRNA gene predicted gene, 26618
Nudt11 X 6047507 to 6054751 7244 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 11
Rpl19-ps12 X 6071222 to 6071812 590 + pseudogene ribosomal protein L19, pseudogene 12
Gm27360 X 6071478 to 6071557 79 + miRNA gene predicted gene, 27360
AU022751 X 6081219 to 6083419 2200 - protein coding gene expressed sequence AU022751
Cpgi22560 X 6082097 to 6082701 604 CpG island CpG island 22560
Cpgi22561 X 6082962 to 6083432 470 CpG island CpG island 22561
Tssr162767 X 6083415 to 6083423 8 - TSS region transcription start site region 162767
Cpgi22562 X 6092111 to 6092368 257 CpG island CpG island 22562
Gm33733 X 6092424 to 6229711 137287 + lncRNA gene predicted gene, 33733
DXMit101 X 6106713 to 6106833 120 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 101
n-R5s2 X 6106891 to 6107009 118 + rRNA gene nuclear encoded rRNA 5S 2
Nudt10 X 6168696 to 6173015 4319 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 10
Tssr162768 X 6171827 to 6171832 5 - TSS region transcription start site region 162768
Gm46685 X 6238400 to 6241113 2713 + lncRNA gene predicted gene, 46685
Bmp15 X 6314107 to 6320721 6614 - protein coding gene bone morphogenetic protein 15
Tssr162769 X 6320717 to 6320726 9 - TSS region transcription start site region 162769
Tssr5582 X 6346291 to 6346292 1 + TSS region transcription start site region 5582
Cpgi22563 X 6399669 to 6400929 1260 CpG island CpG island 22563
Shroom4 X 6399940 to 6637454 237514 + protein coding gene shroom family member 4
Tssr160356 X 6400027 to 6400061 34 + TSS region transcription start site region 160356
Tssr160357 X 6400076 to 6400109 33 + TSS region transcription start site region 160357
Tssr160358 X 6400111 to 6400144 33 + TSS region transcription start site region 160358
Tssr5583 X 6415697 to 6415712 15 + TSS region transcription start site region 5583
Tssr160359 X 6415725 to 6415730 5 + TSS region transcription start site region 160359
Tssr160360 X 6415736 to 6415747 11 + TSS region transcription start site region 160360
Tssr160361 X 6416941 to 6416955 14 + TSS region transcription start site region 160361
5430428K19Rik X 6452376 to 6574663 122287 - lncRNA gene RIKEN cDNA 5430428K19 gene
DXMit204 X 6488876 to 6489049 173 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 204
DXMit203 X 6502911 to 6503060 149 DNA segment DNA Segment, Chr X Massachusetts Institute of Technology 203
Tssr160362 X 6577259 to 6577294 35 + TSS region transcription start site region 160362
Tssr160363 X 6577310 to 6577327 17 + TSS region transcription start site region 160363
Tssr160364 X 6778473 to 6778488 15 + TSS region transcription start site region 160364
Dgkk X 6779306 to 6948363 169057 + protein coding gene diacylglycerol kinase kappa
Cpgi22564 X 6780231 to 6780398 167 CpG island CpG island 22564
Tssr160365 X 6945247 to 6945261 14 + TSS region transcription start site region 160365
Ccnb3 X 6979652 to 7041619 61967 - protein coding gene cyclin B3
Tssr162770 X 7041650 to 7041658 8 - TSS region transcription start site region 162770
Tssr160366 X 7067496 to 7067515 19 + TSS region transcription start site region 160366
Tssr160367 X 7067516 to 7067534 18 + TSS region transcription start site region 160367
Akap4 X 7067519 to 7078609 11090 + protein coding gene A kinase (PRKA) anchor protein 4
Tssr160368 X 7068208 to 7068219 11 + TSS region transcription start site region 160368
DXMit123 X 7125097 to 7125216 119 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 123
Gm14380 X 7142858 to 7143288 430 - pseudogene predicted gene 14380
Clcn5 X 7153810 to 7319358 165548 - protein coding gene chloride channel, voltage-sensitive 5
Tssr162771 X 7188636 to 7188650 14 - TSS region transcription start site region 162771
Tssr162772 X 7188660 to 7188671 11 - TSS region transcription start site region 162772
Tssr162773 X 7188673 to 7188712 39 - TSS region transcription start site region 162773
Tssr162774 X 7188713 to 7188743 30 - TSS region transcription start site region 162774
Gm26401 X 7229775 to 7229850 75 + snoRNA gene predicted gene, 26401
Tssr162775 X 7235152 to 7235157 5 - TSS region transcription start site region 162775
Mir500 X 7237683 to 7237774 91 - miRNA gene microRNA 500
Tssr162776 X 7237689 to 7237694 5 - TSS region transcription start site region 162776
Mir501 X 7241243 to 7241351 108 - miRNA gene microRNA 501
Mir362 X 7241982 to 7242046 64 - miRNA gene microRNA 362
Mir188 X 7247989 to 7248056 67 - miRNA gene microRNA 188
Mir532 X 7248402 to 7248497 95 - miRNA gene microRNA 532
DXImx35 X 7276832 to 7277076 244 DNA segment DNA segment, Chr X, Immunex 35
DXImx36 X 7312379 to 7312610 231 DNA segment DNA segment, Chr X, Immunex 36
DXImx5 X 7315495 to 7315699 204 DNA segment DNA segment, Chr X, Immunex 5
Cpgi22565 X 7318569 to 7319504 935 CpG island CpG island 22565
Tssr162777 X 7319157 to 7319178 21 - TSS region transcription start site region 162777
Tssr162778 X 7319186 to 7319257 71 - TSS region transcription start site region 162778
Tssr162779 X 7319260 to 7319288 28 - TSS region transcription start site region 162779
Tssr162780 X 7319291 to 7319331 40 - TSS region transcription start site region 162780
DXImx31 X 7321877 to 7322072 195 DNA segment DNA segment, Chr X, Immunex 31
DXImx32 X 7325759 to 7325892 133 DNA segment DNA segment, Chr X, Immunex 32
DXImx34 X 7343074 to 7343236 162 DNA segment DNA segment, Chr X, Immunex 34
DXImx33 X 7344262 to 7344449 187 DNA segment DNA segment, Chr X, Immunex 33
DXMit55 X 7360056 to 7360192 136 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 55
Usp27x X 7372591 to 7375830 3239 - protein coding gene ubiquitin specific peptidase 27, X chromosome
DXImx4 X 7372672 to 7372881 209 DNA segment DNA segment, Chr X, Immunex 4
Cpgi22566 X 7374952 to 7376349 1397 CpG island CpG island 22566
Gm14379 X 7375925 to 7378042 2117 + lncRNA gene predicted gene 14379
DXImx24 X 7399426 to 7399559 133 DNA segment DNA segment, Chr X, Immunex 24
DXImx7 X 7407644 to 7407888 244 DNA segment DNA segment, Chr X, Immunex 7
2010204K13Rik X 7411817 to 7422988 11171 - lncRNA gene RIKEN cDNA 2010204K13 gene
Tssr162781 X 7412734 to 7412741 7 - TSS region transcription start site region 162781
Tssr5584 X 7412744 to 7412747 3 - TSS region transcription start site region 5584
Tssr162782 X 7412756 to 7412772 16 - TSS region transcription start site region 162782
Tssr162783 X 7412774 to 7412788 14 - TSS region transcription start site region 162783
Tssr162784 X 7421039 to 7421085 46 - TSS region transcription start site region 162784
Tssr162785 X 7421087 to 7421121 34 - TSS region transcription start site region 162785
Tssr162786 X 7421123 to 7421132 9 - TSS region transcription start site region 162786
Cpgi22567 X 7422651 to 7422880 229 CpG island CpG island 22567
Tssr162787 X 7422930 to 7422941 11 - TSS region transcription start site region 162787
Tssr162788 X 7422949 to 7422974 25 - TSS region transcription start site region 162788
Tssr162789 X 7422977 to 7422996 19 - TSS region transcription start site region 162789
DXImx8 X 7424809 to 7425033 224 DNA segment DNA segment, Chr X, Immunex 8
Tssr162790 X 7429639 to 7429655 16 - TSS region transcription start site region 162790
Tssr160369 X 7429741 to 7429790 49 + TSS region transcription start site region 160369
Gm32829 X 7458613 to 7473975 15362 - lncRNA gene predicted gene, 32829
DXImx27 X 7468632 to 7468794 162 DNA segment DNA segment, Chr X, Immunex 27
DXImx26 X 7468989 to 7469195 206 DNA segment DNA segment, Chr X, Immunex 26
DXImx12 X 7483782 to 7484062 280 DNA segment DNA segment, Chr X, Immunex 12
Gm32874 X 7500488 to 7505561 5073 - lncRNA gene predicted gene, 32874
DXImx37 X 7502376 to 7502598 222 DNA segment DNA segment, Chr X, Immunex 37
DXImx9 X 7506249 to 7506532 283 DNA segment DNA segment, Chr X, Immunex 9
Gm14381 X 7513788 to 7514201 413 - pseudogene predicted gene 14381
DXImx10 X 7521621 to 7521806 185 DNA segment DNA segment, Chr X, Immunex 10
DXImx23 X 7533024 to 7533168 144 DNA segment DNA segment, Chr X, Immunex 23
Gm14395 X 7535571 to 7536133 562 - pseudogene predicted gene 14395
Gm14394 X 7547020 to 7547314 294 - pseudogene predicted gene 14394
Gm23082 X 7547348 to 7547480 132 - snoRNA gene predicted gene, 23082
DXImx20 X 7557235 to 7557408 173 DNA segment DNA segment, Chr X, Immunex 20
Ppp1r3f X 7558562 to 7574281 15719 - protein coding gene protein phosphatase 1, regulatory subunit 3F
Gm36995 X 7558602 to 7605381 46779 - unclassified non-coding RNA gene predicted gene, 36995
Tssr162791 X 7564280 to 7564292 12 - TSS region transcription start site region 162791
Tssr160370 X 7566535 to 7566576 41 + TSS region transcription start site region 160370
Tssr162792 X 7567563 to 7567577 14 - TSS region transcription start site region 162792
Tssr162793 X 7567637 to 7567642 5 - TSS region transcription start site region 162793
Tssr162794 X 7570838 to 7570853 15 - TSS region transcription start site region 162794
Tssr160371 X 7571184 to 7571191 7 + TSS region transcription start site region 160371
Tssr160372 X 7571194 to 7571203 9 + TSS region transcription start site region 160372
Tssr162795 X 7572321 to 7572324 3 - TSS region transcription start site region 162795
Tssr160373 X 7572539 to 7572554 15 + TSS region transcription start site region 160373
Tssr160374 X 7572612 to 7572623 11 + TSS region transcription start site region 160374
Tssr160375 X 7572639 to 7572650 11 + TSS region transcription start site region 160375
Tssr160376 X 7572666 to 7572671 5 + TSS region transcription start site region 160376
Tssr160377 X 7572673 to 7572689 16 + TSS region transcription start site region 160377
Tssr160378 X 7572699 to 7572723 24 + TSS region transcription start site region 160378
Tssr160379 X 7572737 to 7572750 13 + TSS region transcription start site region 160379
Tssr160380 X 7572796 to 7572809 13 + TSS region transcription start site region 160380
Tssr162796 X 7572848 to 7572858 10 - TSS region transcription start site region 162796
Tssr160381 X 7573205 to 7573247 42 + TSS region transcription start site region 160381
Cpgi22568 X 7573235 to 7574728 1493 CpG island CpG island 22568
Flicr X 7573600 to 7581016 7416 + antisense lncRNA gene Foxp3 regulating long intergenic noncoding RNA
Tssr162797 X 7574244 to 7574312 68 - TSS region transcription start site region 162797
Tssr160382 X 7577496 to 7577521 25 + TSS region transcription start site region 160382
Tssr160383 X 7579666 to 7579685 19 + TSS region transcription start site region 160383
Foxp3 X 7579676 to 7595243 15567 + protein coding gene forkhead box P3
Tssr160384 X 7579701 to 7579712 11 + TSS region transcription start site region 160384
Tssr160385 X 7579749 to 7579760 11 + TSS region transcription start site region 160385
Tssr160386 X 7580485 to 7580491 6 + TSS region transcription start site region 160386
Tssr160387 X 7580500 to 7580509 9 + TSS region transcription start site region 160387
Tssr162798 X 7583933 to 7583955 22 - TSS region transcription start site region 162798
Tssr162799 X 7584050 to 7584059 9 - TSS region transcription start site region 162799
Tssr160388 X 7584448 to 7584451 3 + TSS region transcription start site region 160388
Tssr160389 X 7593078 to 7593079 1 + TSS region transcription start site region 160389
Tssr160390 X 7593145 to 7593172 27 + TSS region transcription start site region 160390
Tssr160391 X 7593225 to 7593236 11 + TSS region transcription start site region 160391
Tssr160392 X 7593245 to 7593252 7 + TSS region transcription start site region 160392
Tssr160393 X 7593453 to 7593460 7 + TSS region transcription start site region 160393
Tssr160394 X 7593503 to 7593511 8 + TSS region transcription start site region 160394
Ccdc22 X 7593809 to 7605420 11611 - protein coding gene coiled-coil domain containing 22
Tssr162800 X 7595052 to 7595064 12 - TSS region transcription start site region 162800
Tssr162801 X 7595210 to 7595219 9 - TSS region transcription start site region 162801
Tssr162802 X 7595442 to 7595450 8 - TSS region transcription start site region 162802
Tssr162803 X 7605320 to 7605368 48 - TSS region transcription start site region 162803
Tssr162804 X 7605374 to 7605402 28 - TSS region transcription start site region 162804
Cacna1f X 7607083 to 7635196 28113 + protein coding gene calcium channel, voltage-dependent, alpha 1F subunit
Tssr160395 X 7607108 to 7607127 19 + TSS region transcription start site region 160395
Cpgi22569 X 7610680 to 7611011 331 CpG island CpG island 22569
DXMit26 X 7612495 to 7612712 217 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 26
DXImx28 X 7629020 to 7629322 302 DNA segment DNA segment, Chr X, Immunex 28
Tssr160396 X 7632754 to 7632790 36 + TSS region transcription start site region 160396
Cpgi22570 X 7638528 to 7638950 422 CpG island CpG island 22570
Syp X 7638580 to 7653256 14676 + protein coding gene synaptophysin
Tssr160397 X 7638674 to 7638697 23 + TSS region transcription start site region 160397
Tssr160398 X 7641093 to 7641109 16 + TSS region transcription start site region 160398
Tssr160399 X 7644139 to 7644153 14 + TSS region transcription start site region 160399
Tssr160400 X 7644232 to 7644244 12 + TSS region transcription start site region 160400
Tssr160401 X 7644820 to 7644836 16 + TSS region transcription start site region 160401
DXImx21 X 7645663 to 7645823 160 DNA segment DNA segment, Chr X, Immunex 21
Cpgi22571 X 7648704 to 7648880 176 CpG island CpG island 22571
Tssr160402 X 7648718 to 7648729 11 + TSS region transcription start site region 160402
Gm14703 X 7651106 to 7657258 6152 - antisense lncRNA gene predicted gene 14703
Tssr160403 X 7651882 to 7651901 19 + TSS region transcription start site region 160403
Tssr160404 X 7651982 to 7651996 14 + TSS region transcription start site region 160404
Tssr160405 X 7652467 to 7652486 19 + TSS region transcription start site region 160405
Tssr162805 X 7652802 to 7652811 9 - TSS region transcription start site region 162805
Tssr160406 X 7652815 to 7652829 14 + TSS region transcription start site region 160406
Tssr160407 X 7652927 to 7652944 17 + TSS region transcription start site region 160407
Tssr160408 X 7652965 to 7652981 16 + TSS region transcription start site region 160408
Cpgi22572 X 7657174 to 7657503 329 CpG island CpG island 22572
Tssr160409 X 7657355 to 7657426 71 + TSS region transcription start site region 160409
Prickle3 X 7657379 to 7668186 10807 + protein coding gene prickle planar cell polarity protein 3
Tssr160410 X 7657439 to 7657450 11 + TSS region transcription start site region 160410
DXImx29 X 7659764 to 7659980 216 DNA segment DNA segment, Chr X, Immunex 29
Cpgi22573 X 7665097 to 7665252 155 CpG island CpG island 22573
Plp2 X 7667941 to 7671390 3449 - protein coding gene proteolipid protein 2
Tssr162806 X 7671341 to 7671397 56 - TSS region transcription start site region 162806
Tssr162807 X 7671400 to 7671412 12 - TSS region transcription start site region 162807