Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:53173323-62986890

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521 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wght11 X 12000000 to 60000000 48000000 QTL weight 11
Lgth13 X 12000000 to 60000000 48000000 QTL body length 13
Bw19 X 47288043 to 53323450 6035407 QTL body weight QTL 19
Plac1 X 53069995 to 53240111 170116 - protein coding gene placental specific protein 1
Tssr163387 X 53209774 to 53209800 26 - TSS region transcription start site region 163387
Tssr163388 X 53209820 to 53209834 14 - TSS region transcription start site region 163388
DXMit91 X 53223092 to 53223239 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 91
Tssr163389 X 53240086 to 53240098 12 - TSS region transcription start site region 163389
Tssr163390 X 53240101 to 53240107 6 - TSS region transcription start site region 163390
Fam122b X 53243415 to 53269805 26390 - protein coding gene family with sequence similarity 122, member B
Tssr163391 X 53266297 to 53266327 30 - TSS region transcription start site region 163391
Tssr163392 X 53269022 to 53269068 46 - TSS region transcription start site region 163392
Cpgi22720 X 53269451 to 53269677 226 CpG island CpG island 22720
Tssr163393 X 53269786 to 53269858 72 - TSS region transcription start site region 163393
Tssr160962 X 53273418 to 53273429 11 + TSS region transcription start site region 160962
Fam122c X 53273424 to 53331185 57761 + protein coding gene family with sequence similarity 122, member C
Tssr160963 X 53273445 to 53273455 10 + TSS region transcription start site region 160963
Gm23718 X 53306177 to 53306483 306 + unclassified non-coding RNA gene predicted gene, 23718
Gm14585 X 53314533 to 53315166 633 + pseudogene predicted gene 14585
Lvic5 X 53323323 to 63983961 10660638 QTL liver iron content 5
DXMit68 X 53323323 to 53323450 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 68
Pubt1 X 53323323 to 62836890 9513567 QTL pubertal timing 1
Mospd1 X 53344598 to 53370502 25904 - protein coding gene motile sperm domain containing 1
Tssr163394 X 53370442 to 53370466 24 - TSS region transcription start site region 163394
Tssr163395 X 53370470 to 53370501 31 - TSS region transcription start site region 163395
Tssr163396 X 53370513 to 53370528 15 - TSS region transcription start site region 163396
Tssr163397 X 53370553 to 53370564 11 - TSS region transcription start site region 163397
Gm14584 X 53418331 to 53418967 636 + pseudogene predicted gene 14584
Etd X 53434918 to 53443576 8658 + protein coding gene embryonic testis differentiation
Tssr160964 X 53434944 to 53434949 5 + TSS region transcription start site region 160964
Tssr160965 X 53434952 to 53434972 20 + TSS region transcription start site region 160965
Tssr160966 X 53434989 to 53435015 26 + TSS region transcription start site region 160966
Gm36046 X 53459784 to 53464672 4888 + lncRNA gene predicted gene, 36046
Tssr5621 X 53460314 to 53460325 11 + TSS region transcription start site region 5621
Gm14597 X 53577073 to 53580003 2930 - protein coding gene predicted gene 14597
Tssr160967 X 53607892 to 53607916 24 + TSS region transcription start site region 160967
Tssr160968 X 53607918 to 53607954 36 + TSS region transcription start site region 160968
Tssr160969 X 53607959 to 53607978 19 + TSS region transcription start site region 160969
Tssr160970 X 53607987 to 53608015 28 + TSS region transcription start site region 160970
Rtl8c X 53608032 to 53608432 400 + protein coding gene retrotransposon Gag like 8C
Gm14592 X 53623291 to 53623840 549 + pseudogene predicted gene 14592
Gm14600 X 53633336 to 53633965 629 + pseudogene predicted gene 14600
Rtl8a X 53642488 to 53643682 1194 - protein coding gene retrotransposon Gag like 8A
Tssr163398 X 53643717 to 53643769 52 - TSS region transcription start site region 163398
Tssr163399 X 53643771 to 53643778 7 - TSS region transcription start site region 163399
Rtl8b X 53669177 to 53670408 1231 - protein coding gene retrotransposon Gag like 8B
Tssr163400 X 53670397 to 53670456 59 - TSS region transcription start site region 163400
Tssr163401 X 53670508 to 53670540 32 - TSS region transcription start site region 163401
4933416I08Rik X 53686637 to 53690919 4282 + pseudogene RIKEN cDNA 4933416I08 gene
Tssr160971 X 53688075 to 53688110 35 + TSS region transcription start site region 160971
AW822252 X 53696922 to 53716578 19656 - lincRNA gene expressed sequence AW822252
DXMit167 X 53713482 to 53713603 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 167
Cpgi22721 X 53716343 to 53716856 513 CpG island CpG island 22721
Tssr160972 X 53724639 to 53724644 5 + TSS region transcription start site region 160972
Tssr160973 X 53724795 to 53724815 20 + TSS region transcription start site region 160973
4930502E18Rik X 53724826 to 53738441 13615 + protein coding gene RIKEN cDNA 4930502E18 gene
Tssr160974 X 53724836 to 53724844 8 + TSS region transcription start site region 160974
Tssr160975 X 53724894 to 53724897 3 + TSS region transcription start site region 160975
1700013H16Rik X 53742901 to 53757831 14930 - protein coding gene RIKEN cDNA 1700013H16 gene
Cpgi22722 X 53756732 to 53757120 388 CpG island CpG island 22722
Tssr163402 X 53757836 to 53757849 13 - TSS region transcription start site region 163402
Gm6025 X 53762815 to 53763015 200 + pseudogene predicted pseudogene 6025
Tssr160976 X 53772801 to 53772816 15 + TSS region transcription start site region 160976
Gm14593 X 53772836 to 53773129 293 + pseudogene predicted gene 14593
Zfp36l3 X 53774048 to 53776394 2346 - protein coding gene zinc finger protein 36, C3H type-like 3
Tssr163403 X 53775477 to 53775488 11 - TSS region transcription start site region 163403
Cpgi22723 X 53775722 to 53775976 254 CpG island CpG island 22723
Tssr163404 X 53776295 to 53776315 20 - TSS region transcription start site region 163404
Tssr163405 X 53776321 to 53776332 11 - TSS region transcription start site region 163405
Tssr163406 X 53776355 to 53776377 22 - TSS region transcription start site region 163406
Tssr163407 X 53776392 to 53776401 9 - TSS region transcription start site region 163407
Tssr163408 X 53776403 to 53776407 4 - TSS region transcription start site region 163408
Xlr X 53777118 to 53797706 20588 - protein coding gene X-linked lymphocyte-regulated
Tssr163409 X 53778350 to 53778386 36 - TSS region transcription start site region 163409
Gm14599 X 53816129 to 53820026 3897 - pseudogene predicted gene 14599
Gm38663 X 53829150 to 53832192 3042 + pseudogene predicted gene, 38663
Gm14589 X 53844121 to 53844847 726 + pseudogene predicted gene 14589
Gm31171 X 53855069 to 53856216 1147 - lncRNA gene predicted gene, 31171
Atf1-ps X 53883611 to 53884420 809 - pseudogene activating transcription factor 1, pseudogene
Gm14591 X 53965772 to 53966674 902 - pseudogene predicted gene 14591
Gm15482 X 53969437 to 53975000 5563 - unclassified non-coding RNA gene predicted gene 15482
Gm14601 X 53974554 to 53974789 235 - pseudogene predicted gene 14601
Cpgi22724 X 53974612 to 53974987 375 CpG island CpG island 22724
Cpgi22725 X 53975853 to 53976056 203 CpG island CpG island 22725
Gm46673 X 54081353 to 54081729 376 + pseudogene predicted gene, 46673
Gm14644 X 54094373 to 54096289 1916 + pseudogene predicted gene 14644
Gm22550 X 54118995 to 54119101 106 + snRNA gene predicted gene, 22550
Gm16428 X 54134885 to 54144175 9290 + pseudogene predicted gene 16428
Gm7916 X 54174779 to 54202199 27420 + pseudogene predicted gene 7916
Gm14598 X 54237715 to 54253212 15497 + pseudogene predicted gene 14598
Gm6591 X 54312878 to 54333284 20406 + pseudogene predicted gene 6591
Gm14596 X 54350695 to 54365856 15161 + pseudogene predicted gene 14596
Gm14594 X 54441739 to 54456930 15191 + pseudogene predicted gene 14594
Gm16405 X 54531208 to 54548016 16808 + protein coding gene predicted gene 16405
Gm16430 X 54622211 to 54639019 16808 + protein coding gene predicted gene 16430
Gm14595 X 54714790 to 54729932 15142 + pseudogene predicted gene 14595
Gm14590 X 54812464 to 54827711 15247 + pseudogene predicted gene 14590
Gm16431 X 54968283 to 54988695 20412 + pseudogene predicted gene 16431
Gm7950 X 55020844 to 55035959 15115 + pseudogene predicted pseudogene 7950
Gm7958 X 55097191 to 55112304 15113 + pseudogene predicted gene 7958
Gm7974 X 55175816 to 55196233 20417 + pseudogene predicted gene 7974
Slxl1 X 55226876 to 55243723 16847 + protein coding gene Slx-like 1
Gm6660 X 55311386 to 55326515 15129 + pseudogene predicted gene 6660
Gm14625 X 55431819 to 55446793 14974 + pseudogene predicted gene 14625
Gm16404 X 55553147 to 55568358 15211 + pseudogene predicted gene 16404
Gm14622 X 55699744 to 55722121 22377 + pseudogene predicted gene 14622
Gm6664 X 55798272 to 55816903 18631 + pseudogene predicted gene 6664
Gm14626 X 55839252 to 55842041 2789 + pseudogene predicted gene 14626
Gm19106 X 55843837 to 55844353 516 - pseudogene predicted gene, 19106
Gm7927 X 55845762 to 55846638 876 - pseudogene predicted gene 7927
Gm14623 X 55862223 to 55876613 14390 + pseudogene predicted gene 14623
Gm6668 X 55874617 to 55875471 854 - pseudogene predicted gene 6668
Gm35586 X 55891713 to 55895852 4139 - protein coding gene predicted gene, 35586
Tssr163410 X 55895848 to 55895853 5 - TSS region transcription start site region 163410
Gm14624 X 55904723 to 55912887 8164 + pseudogene predicted gene 14624
Gm35536 X 55920006 to 55925907 5901 - lncRNA gene predicted gene, 35536
Gm46668 X 55951058 to 55951436 378 - pseudogene predicted gene, 46668
Gm35487 X 55971903 to 55972766 863 - lncRNA gene predicted gene, 35487
Gm46669 X 55975060 to 55975438 378 - pseudogene predicted gene, 46669
Gm22103 X 56070664 to 56070784 120 + miRNA gene predicted gene, 22103
Gm19151 X 56094216 to 56094941 725 - pseudogene predicted gene, 19151
Gm46670 X 56106814 to 56128318 21504 - pseudogene predicted gene, 46670
Gm14638 X 56129658 to 56134920 5262 + pseudogene predicted gene 14638
Tssr160977 X 56136547 to 56136583 36 + TSS region transcription start site region 160977
3830403N18Rik X 56136572 to 56153498 16926 + protein coding gene RIKEN cDNA 3830403N18 gene
Gm14639 X 56155528 to 56156393 865 - pseudogene predicted gene 14639
Gm773 X 56189827 to 56212881 23054 - protein coding gene predicted gene 773
Gm14627 X 56190932 to 56191498 566 + pseudogene predicted gene 14627
Tssr163411 X 56212903 to 56212915 12 - TSS region transcription start site region 163411
Gm2120 X 56214881 to 56215397 516 + pseudogene predicted gene 2120
Gm35893 X 56223150 to 56226516 3366 - lncRNA gene predicted gene, 35893
Gm35953 X 56277085 to 56293278 16193 - protein coding gene predicted gene, 35953
Tssr160978 X 56317515 to 56317540 25 + TSS region transcription start site region 160978
1600025M17Rik X 56317608 to 56320664 3056 + lincRNA gene RIKEN cDNA 1600025M17 gene
Tssr160979 X 56317642 to 56317655 13 + TSS region transcription start site region 160979
Tssr160980 X 56322976 to 56322989 13 + TSS region transcription start site region 160980
Gm38625 X 56344120 to 56346215 2095 - lncRNA gene predicted gene, 38625
Cpgi22726 X 56346261 to 56346600 339 CpG island CpG island 22726
Tssr160981 X 56346390 to 56346415 25 + TSS region transcription start site region 160981
Zfp449 X 56346400 to 56365674 19274 + protein coding gene zinc finger protein 449
Gm2155 X 56371620 to 56374790 3170 - antisense lncRNA gene predicted gene 2155
Cpgi22727 X 56374398 to 56375056 658 CpG island CpG island 22727
Tssr160982 X 56374550 to 56374617 67 + TSS region transcription start site region 160982
Smim10l2a X 56374586 to 56377799 3213 + protein coding gene small integral membrane protein 10 like 2A
Tssr160983 X 56374805 to 56374834 29 + TSS region transcription start site region 160983
6530403M18Rik X 56381198 to 56382576 1378 unclassified non-coding RNA gene RIKEN cDNA 6530403M18 gene
Gm39514 X 56389268 to 56395835 6567 + lncRNA gene predicted gene, 39514
DXMit193 X 56432713 to 56432836 123 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 193
Gm14633 X 56447927 to 56448357 430 - pseudogene predicted gene 14633
Gm2174 X 56447965 to 56448366 401 + protein coding gene predicted gene 2174
Tssr160984 X 56454814 to 56454825 11 + TSS region transcription start site region 160984
Tssr160985 X 56454836 to 56454849 13 + TSS region transcription start site region 160985
Tssr160986 X 56454851 to 56454869 18 + TSS region transcription start site region 160986
Ints6l X 56454857 to 56507843 52986 + protein coding gene integrator complex subunit 6 like
Tssr160987 X 56454871 to 56454887 16 + TSS region transcription start site region 160987
Tssr160988 X 56454919 to 56454928 9 + TSS region transcription start site region 160988
Cpgi22728 X 56455229 to 56456174 945 CpG island CpG island 22728
Tssr160989 X 56455459 to 56455474 15 + TSS region transcription start site region 160989
Tssr160990 X 56469278 to 56469300 22 + TSS region transcription start site region 160990
Tssr160991 X 56474208 to 56474212 4 + TSS region transcription start site region 160991
Gm10477 X 56524742 to 56525432 690 + protein coding gene predicted gene 10477
DXMit86 X 56532946 to 56533054 108 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 86
Gm648 X 56543874 to 56549606 5732 - protein coding gene predicted gene 648
Tssr163412 X 56549515 to 56549544 29 - TSS region transcription start site region 163412
Tssr163413 X 56549596 to 56549605 9 - TSS region transcription start site region 163413
Tssr163414 X 56549619 to 56549622 3 - TSS region transcription start site region 163414
Tssr163415 X 56549675 to 56549679 4 - TSS region transcription start site region 163415
Tssr163416 X 56549692 to 56549703 11 - TSS region transcription start site region 163416
Tssr163417 X 56549710 to 56549717 7 - TSS region transcription start site region 163417
Tssr163418 X 56553144 to 56553179 35 - TSS region transcription start site region 163418
Mmgt1 X 56585512 to 56597919 12407 - protein coding gene membrane magnesium transporter 1
n-TAagc2 X 56587539 to 56587611 72 + tRNA gene nuclear encoded tRNA alanine 2 (anticodon AGC)
Mir5116 X 56587852 to 56587914 62 - miRNA gene microRNA 5116
Cpgi22729 X 56597703 to 56598314 611 CpG island CpG island 22729
Tssr163419 X 56597867 to 56597879 12 - TSS region transcription start site region 163419
Tssr163420 X 56597880 to 56597971 91 - TSS region transcription start site region 163420
Tssr163421 X 56598015 to 56598025 10 - TSS region transcription start site region 163421
Tssr163422 X 56598031 to 56598045 14 - TSS region transcription start site region 163422
Tssr163423 X 56598081 to 56598107 26 - TSS region transcription start site region 163423
Gm36239 X 56598192 to 56599656 1464 + lncRNA gene predicted gene, 36239
DXMit108 X 56606440 to 56606588 148 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 108
Cpgi22730 X 56609737 to 56610358 621 CpG island CpG island 22730
Tssr160992 X 56609751 to 56609797 46 + TSS region transcription start site region 160992
Slc9a6 X 56609757 to 56664230 54473 + protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 6
Tssr160993 X 56609843 to 56609864 21 + TSS region transcription start site region 160993
Gm39515 X 56682477 to 56684891 2414 + lncRNA gene predicted gene, 39515
Gm36289 X 56720384 to 56723608 3224 - lncRNA gene predicted gene, 36289
Gm26312 X 56725073 to 56725237 164 + snRNA gene predicted gene, 26312
Cpgi22731 X 56731105 to 56732203 1098 CpG island CpG island 22731
Tssr160994 X 56731366 to 56731416 50 + TSS region transcription start site region 160994
Tssr160995 X 56731420 to 56731441 21 + TSS region transcription start site region 160995
Tssr160996 X 56731442 to 56731471 29 + TSS region transcription start site region 160996
Tssr160997 X 56731513 to 56731608 95 + TSS region transcription start site region 160997
Tssr160998 X 56731756 to 56731767 11 + TSS region transcription start site region 160998
Tssr160999 X 56731779 to 56731798 19 + TSS region transcription start site region 160999
Fhl1 X 56731787 to 56793346 61559 + protein coding gene four and a half LIM domains 1
Tssr163424 X 56731873 to 56731875 2 - TSS region transcription start site region 163424
Tssr161000 X 56734811 to 56734817 6 + TSS region transcription start site region 161000
Gm23258 X 56750010 to 56750115 105 + snRNA gene predicted gene, 23258
Tssr161001 X 56779549 to 56779565 16 + TSS region transcription start site region 161001