Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:53020906-53131359

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hprt X 52988137 to 53021659 33522 + protein coding gene hypoxanthine guanine phosphoribosyl transferase
DXMit23 X 53029767 to 53030015 248 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 23
Tssr5620 X 53039860 to 53039872 12 + TSS region transcription start site region 5620
Mir450b X 53047997 to 53048078 81 - miRNA gene microRNA 450b
Mirc47 X 53047997 to 53048367 370 complex/cluster/region microRNA cluster 47, including Mir450b through Mir450a-2
Mir450-1 X 53048154 to 53048244 90 - miRNA gene microRNA 450-1
Mir450-2 X 53048299 to 53048367 68 - miRNA gene microRNA 450-2
Mir542 X 53049403 to 53049487 84 - miRNA gene microRNA 542
Gm28730 X 53051194 to 53053159 1965 - lincRNA gene predicted gene 28730
Mirc24 X 53053255 to 53054349 1094 complex/cluster/region microRNA cluster 24, including Mir351 through Mir322
Mir351 X 53053255 to 53053353 98 - miRNA gene microRNA 351
Tssr163376 X 53053271 to 53053275 4 - TSS region transcription start site region 163376
Mir503 X 53053984 to 53054054 70 - miRNA gene microRNA 503
Mir322 X 53054255 to 53054349 94 - miRNA gene microRNA 322
C430049B03Rik X 53055046 to 53057190 2144 - lncRNA gene RIKEN cDNA C430049B03 gene
Tssr163377 X 53055376 to 53055391 15 - TSS region transcription start site region 163377
Cpgi22719 X 53056738 to 53057503 765 CpG island CpG island 22719
Tssr163378 X 53057183 to 53057200 17 - TSS region transcription start site region 163378
Gm35988 X 53063860 to 53167728 103868 + lncRNA gene predicted gene, 35988
Plac1 X 53069995 to 53240111 170116 - protein coding gene placental specific protein 1
Tssr163379 X 53070464 to 53070490 26 - TSS region transcription start site region 163379
Tssr163380 X 53070567 to 53070578 11 - TSS region transcription start site region 163380
Tssr163381 X 53070651 to 53070669 18 - TSS region transcription start site region 163381
DXJti2 X 53075906 to 53076359 453 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 2
DXDcr1 X 53097215 to 53097310 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 1
DXJti3 X 53102885 to 53103171 286 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 3
Tssr163382 X 53114362 to 53114368 6 - TSS region transcription start site region 163382
Tssr163383 X 53114392 to 53114412 20 - TSS region transcription start site region 163383
Tssr163384 X 53114509 to 53114524 15 - TSS region transcription start site region 163384
Tssr163385 X 53114555 to 53114566 11 - TSS region transcription start site region 163385
Tssr163386 X 53121704 to 53121754 50 - TSS region transcription start site region 163386