Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:52932836-54613129

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw19 X 47288043 to 53323450 6035407 QTL body weight QTL 19
Aggr2 X 49982290 to 53170319 3188029 QTL aggression 2
Phf6 X 52912266 to 52956943 44677 + protein coding gene PHD finger protein 6
DXMit22 X 52983371 to 52983614 243 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 22
Cpgi22718 X 52987975 to 52988800 825 CpG island CpG island 22718
Tssr160953 X 52988075 to 52988078 3 + TSS region transcription start site region 160953
Tssr160954 X 52988082 to 52988115 33 + TSS region transcription start site region 160954
Tssr160955 X 52988119 to 52988148 29 + TSS region transcription start site region 160955
Hprt X 52988137 to 53021659 33522 + protein coding gene hypoxanthine guanine phosphoribosyl transferase
Tssr160956 X 52988155 to 52988199 44 + TSS region transcription start site region 160956
Tssr160957 X 52988209 to 52988211 2 + TSS region transcription start site region 160957
Tssr160958 X 53002158 to 53002185 27 + TSS region transcription start site region 160958
Tssr160959 X 53008663 to 53008693 30 + TSS region transcription start site region 160959
Tssr160960 X 53016358 to 53016404 46 + TSS region transcription start site region 160960
Tssr160961 X 53020095 to 53020122 27 + TSS region transcription start site region 160961
DXMit23 X 53029767 to 53030015 248 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 23
Tssr5620 X 53039860 to 53039872 12 + TSS region transcription start site region 5620
Mir450b X 53047997 to 53048078 81 - miRNA gene microRNA 450b
Mirc47 X 53047997 to 53048367 370 complex/cluster/region microRNA cluster 47, including Mir450b through Mir450a-2
Mir450-1 X 53048154 to 53048244 90 - miRNA gene microRNA 450-1
Mir450-2 X 53048299 to 53048367 68 - miRNA gene microRNA 450-2
Mir542 X 53049403 to 53049487 84 - miRNA gene microRNA 542
Gm28730 X 53051194 to 53053159 1965 - lincRNA gene predicted gene 28730
Mir351 X 53053255 to 53053353 98 - miRNA gene microRNA 351
Mirc24 X 53053255 to 53054349 1094 complex/cluster/region microRNA cluster 24, including Mir351 through Mir322
Tssr163376 X 53053271 to 53053275 4 - TSS region transcription start site region 163376
Mir503 X 53053984 to 53054054 70 - miRNA gene microRNA 503
Mir322 X 53054255 to 53054349 94 - miRNA gene microRNA 322
C430049B03Rik X 53055046 to 53057190 2144 - lncRNA gene RIKEN cDNA C430049B03 gene
Tssr163377 X 53055376 to 53055391 15 - TSS region transcription start site region 163377
Cpgi22719 X 53056738 to 53057503 765 CpG island CpG island 22719
Tssr163378 X 53057183 to 53057200 17 - TSS region transcription start site region 163378
Gm35988 X 53063860 to 53167728 103868 + lncRNA gene predicted gene, 35988
Plac1 X 53069995 to 53240111 170116 - protein coding gene placental specific protein 1
Tssr163379 X 53070464 to 53070490 26 - TSS region transcription start site region 163379
Tssr163380 X 53070567 to 53070578 11 - TSS region transcription start site region 163380
Tssr163381 X 53070651 to 53070669 18 - TSS region transcription start site region 163381
DXJti2 X 53075906 to 53076359 453 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 2
DXDcr1 X 53097215 to 53097310 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 1
DXJti3 X 53102885 to 53103171 286 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 3
Tssr163382 X 53114362 to 53114368 6 - TSS region transcription start site region 163382
Tssr163383 X 53114392 to 53114412 20 - TSS region transcription start site region 163383
Tssr163384 X 53114509 to 53114524 15 - TSS region transcription start site region 163384
Tssr163385 X 53114555 to 53114566 11 - TSS region transcription start site region 163385
Tssr163386 X 53121704 to 53121754 50 - TSS region transcription start site region 163386
DXMit159 X 53170226 to 53170319 93 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 159
Tssr163387 X 53209774 to 53209800 26 - TSS region transcription start site region 163387
Tssr163388 X 53209820 to 53209834 14 - TSS region transcription start site region 163388
DXMit91 X 53223092 to 53223239 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 91
Tssr163389 X 53240086 to 53240098 12 - TSS region transcription start site region 163389
Tssr163390 X 53240101 to 53240107 6 - TSS region transcription start site region 163390
Fam122b X 53243415 to 53269805 26390 - protein coding gene family with sequence similarity 122, member B
Tssr163391 X 53266297 to 53266327 30 - TSS region transcription start site region 163391
Tssr163392 X 53269022 to 53269068 46 - TSS region transcription start site region 163392
Cpgi22720 X 53269451 to 53269677 226 CpG island CpG island 22720
Tssr163393 X 53269786 to 53269858 72 - TSS region transcription start site region 163393
Tssr160962 X 53273418 to 53273429 11 + TSS region transcription start site region 160962
Fam122c X 53273424 to 53331185 57761 + protein coding gene family with sequence similarity 122, member C
Tssr160963 X 53273445 to 53273455 10 + TSS region transcription start site region 160963
Gm23718 X 53306177 to 53306483 306 + unclassified non-coding RNA gene predicted gene, 23718
Gm14585 X 53314533 to 53315166 633 + pseudogene predicted gene 14585
DXMit68 X 53323323 to 53323450 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 68
Lvic5 X 53323323 to 63983961 10660638 QTL liver iron content 5
Pubt1 X 53323323 to 62836890 9513567 QTL pubertal timing 1
Mospd1 X 53344598 to 53370502 25904 - protein coding gene motile sperm domain containing 1
Tssr163394 X 53370442 to 53370466 24 - TSS region transcription start site region 163394
Tssr163395 X 53370470 to 53370501 31 - TSS region transcription start site region 163395
Tssr163396 X 53370513 to 53370528 15 - TSS region transcription start site region 163396
Tssr163397 X 53370553 to 53370564 11 - TSS region transcription start site region 163397
Gm14584 X 53418331 to 53418967 636 + pseudogene predicted gene 14584
Etd X 53434918 to 53443576 8658 + protein coding gene embryonic testis differentiation
Tssr160964 X 53434944 to 53434949 5 + TSS region transcription start site region 160964
Tssr160965 X 53434952 to 53434972 20 + TSS region transcription start site region 160965
Tssr160966 X 53434989 to 53435015 26 + TSS region transcription start site region 160966
Gm36046 X 53459784 to 53464672 4888 + lncRNA gene predicted gene, 36046
Tssr5621 X 53460314 to 53460325 11 + TSS region transcription start site region 5621
Gm14597 X 53577073 to 53580003 2930 - protein coding gene predicted gene 14597
Tssr160967 X 53607892 to 53607916 24 + TSS region transcription start site region 160967
Tssr160968 X 53607918 to 53607954 36 + TSS region transcription start site region 160968
Tssr160969 X 53607959 to 53607978 19 + TSS region transcription start site region 160969
Tssr160970 X 53607987 to 53608015 28 + TSS region transcription start site region 160970
Rtl8c X 53608032 to 53608432 400 + protein coding gene retrotransposon Gag like 8C
Gm14592 X 53623291 to 53623840 549 + pseudogene predicted gene 14592
Gm14600 X 53633336 to 53633965 629 + pseudogene predicted gene 14600
Rtl8a X 53642488 to 53643682 1194 - protein coding gene retrotransposon Gag like 8A
Tssr163398 X 53643717 to 53643769 52 - TSS region transcription start site region 163398
Tssr163399 X 53643771 to 53643778 7 - TSS region transcription start site region 163399
Rtl8b X 53669177 to 53670408 1231 - protein coding gene retrotransposon Gag like 8B
Tssr163400 X 53670397 to 53670456 59 - TSS region transcription start site region 163400
Tssr163401 X 53670508 to 53670540 32 - TSS region transcription start site region 163401
4933416I08Rik X 53686637 to 53690919 4282 + pseudogene RIKEN cDNA 4933416I08 gene
Tssr160971 X 53688075 to 53688110 35 + TSS region transcription start site region 160971
AW822252 X 53696922 to 53716578 19656 - lincRNA gene expressed sequence AW822252
DXMit167 X 53713482 to 53713603 121 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 167
Cpgi22721 X 53716343 to 53716856 513 CpG island CpG island 22721
Tssr160972 X 53724639 to 53724644 5 + TSS region transcription start site region 160972
Tssr160973 X 53724795 to 53724815 20 + TSS region transcription start site region 160973
4930502E18Rik X 53724826 to 53738441 13615 + protein coding gene RIKEN cDNA 4930502E18 gene
Tssr160974 X 53724836 to 53724844 8 + TSS region transcription start site region 160974
Tssr160975 X 53724894 to 53724897 3 + TSS region transcription start site region 160975
1700013H16Rik X 53742901 to 53757831 14930 - protein coding gene RIKEN cDNA 1700013H16 gene
Cpgi22722 X 53756732 to 53757120 388 CpG island CpG island 22722
Tssr163402 X 53757836 to 53757849 13 - TSS region transcription start site region 163402
Gm6025 X 53762815 to 53763015 200 + pseudogene predicted pseudogene 6025
Tssr160976 X 53772801 to 53772816 15 + TSS region transcription start site region 160976
Gm14593 X 53772836 to 53773129 293 + pseudogene predicted gene 14593
Zfp36l3 X 53774048 to 53776394 2346 - protein coding gene zinc finger protein 36, C3H type-like 3
Tssr163403 X 53775477 to 53775488 11 - TSS region transcription start site region 163403
Cpgi22723 X 53775722 to 53775976 254 CpG island CpG island 22723
Tssr163404 X 53776295 to 53776315 20 - TSS region transcription start site region 163404
Tssr163405 X 53776321 to 53776332 11 - TSS region transcription start site region 163405
Tssr163406 X 53776355 to 53776377 22 - TSS region transcription start site region 163406
Tssr163407 X 53776392 to 53776401 9 - TSS region transcription start site region 163407
Tssr163408 X 53776403 to 53776407 4 - TSS region transcription start site region 163408
Xlr X 53777118 to 53797706 20588 - protein coding gene X-linked lymphocyte-regulated
Tssr163409 X 53778350 to 53778386 36 - TSS region transcription start site region 163409
Gm14599 X 53816129 to 53820026 3897 - pseudogene predicted gene 14599
Gm38663 X 53829150 to 53832192 3042 + pseudogene predicted gene, 38663
Gm14589 X 53844121 to 53844847 726 + pseudogene predicted gene 14589
Gm31171 X 53855069 to 53856216 1147 - lncRNA gene predicted gene, 31171
Atf1-ps X 53883611 to 53884420 809 - pseudogene activating transcription factor 1, pseudogene
Gm14591 X 53965772 to 53966674 902 - pseudogene predicted gene 14591
Gm15482 X 53969437 to 53975000 5563 - unclassified non-coding RNA gene predicted gene 15482
Gm14601 X 53974554 to 53974789 235 - pseudogene predicted gene 14601
Cpgi22724 X 53974612 to 53974987 375 CpG island CpG island 22724
Cpgi22725 X 53975853 to 53976056 203 CpG island CpG island 22725
Gm46673 X 54081353 to 54081729 376 + pseudogene predicted gene, 46673
Gm14644 X 54094373 to 54096289 1916 + pseudogene predicted gene 14644
Gm22550 X 54118995 to 54119101 106 + snRNA gene predicted gene, 22550
Gm16428 X 54134885 to 54144175 9290 + pseudogene predicted gene 16428
Gm7916 X 54174779 to 54202199 27420 + pseudogene predicted gene 7916
Gm14598 X 54237715 to 54253212 15497 + pseudogene predicted gene 14598
Gm6591 X 54312878 to 54333284 20406 + pseudogene predicted gene 6591
Gm14596 X 54350695 to 54365856 15161 + pseudogene predicted gene 14596
Gm14594 X 54441739 to 54456930 15191 + pseudogene predicted gene 14594
Gm16405 X 54531208 to 54548016 16808 + protein coding gene predicted gene 16405