Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:52474860-53604872

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bw19 X 47288043 to 53323450 6035407 QTL body weight QTL 19
Aggr2 X 49982290 to 53170319 3188029 QTL aggression 2
Gpc3 X 52272426 to 52613950 341524 - protein coding gene glypican 3
Tssr163361 X 52541994 to 52541999 5 - TSS region transcription start site region 163361
Tssr163362 X 52543191 to 52543195 4 - TSS region transcription start site region 163362
Tssr163363 X 52548758 to 52548763 5 - TSS region transcription start site region 163363
Tssr163364 X 52569119 to 52569121 2 - TSS region transcription start site region 163364
A630012P03Rik X 52575843 to 52619047 43204 + antisense lncRNA gene RIKEN cDNA A630012P03 gene
Tssr163365 X 52578138 to 52578142 4 - TSS region transcription start site region 163365
Tssr163366 X 52582921 to 52582951 30 - TSS region transcription start site region 163366
Cpgi22715 X 52613372 to 52614435 1063 CpG island CpG island 22715
Tssr163367 X 52613897 to 52613910 13 - TSS region transcription start site region 163367
Tssr163368 X 52613913 to 52613924 11 - TSS region transcription start site region 163368
Tssr163369 X 52613936 to 52613979 43 - TSS region transcription start site region 163369
Tssr163370 X 52614217 to 52614228 11 - TSS region transcription start site region 163370
Tssr163371 X 52614239 to 52614260 21 - TSS region transcription start site region 163371
Mirc2 X 52741693 to 52742567 874 complex/cluster/region microRNA cluster 2, including Mir363 through Mir106a
Mir363 X 52741693 to 52741767 74 - miRNA gene microRNA 363
Mir92-2 X 52741838 to 52741928 90 - miRNA gene microRNA 92-2
Mir19b-2 X 52741983 to 52742066 83 - miRNA gene microRNA 19b-2
Mir20b X 52742113 to 52742192 79 - miRNA gene microRNA 20b
Mir18b X 52742331 to 52742413 82 - miRNA gene microRNA 18b
Mir106a X 52742503 to 52742567 64 - miRNA gene microRNA 106a
Kis2 X 52742563 to 52744593 2030 - lncRNA gene Kaplan integration site 2
Tssr163372 X 52743891 to 52743918 27 - TSS region transcription start site region 163372
Cpgi22716 X 52744247 to 52744660 413 CpG island CpG island 22716
Tssr163373 X 52744583 to 52744598 15 - TSS region transcription start site region 163373
Tssr160936 X 52760425 to 52760434 9 + TSS region transcription start site region 160936
Gm42407 X 52760995 to 52763973 2978 + lncRNA gene predicted gene, 42407
Gm14586 X 52772342 to 52772749 407 - pseudogene predicted gene 14586
Tssr163374 X 52772763 to 52772774 11 - TSS region transcription start site region 163374
Gm7851 X 52782694 to 52783016 322 - pseudogene predicted gene 7851
Tssr160937 X 52788286 to 52788296 10 + TSS region transcription start site region 160937
Tssr160938 X 52788316 to 52788319 3 + TSS region transcription start site region 160938
Tssr160939 X 52788336 to 52788348 12 + TSS region transcription start site region 160939
Tssr160940 X 52791078 to 52791099 21 + TSS region transcription start site region 160940
Tssr160941 X 52791160 to 52791173 13 + TSS region transcription start site region 160941
Tssr160942 X 52791179 to 52791201 22 + TSS region transcription start site region 160942
Ccdc160 X 52791200 to 52799468 8268 + protein coding gene coiled-coil domain containing 160
Tssr160943 X 52791204 to 52791231 27 + TSS region transcription start site region 160943
Tssr160944 X 52793041 to 52793076 35 + TSS region transcription start site region 160944
Gm14607 X 52878239 to 52878726 487 + pseudogene predicted gene 14607
Gm6539 X 52879315 to 52880255 940 + pseudogene predicted gene 6539
Rps2-ps13 X 52898588 to 52899469 881 + pseudogene ribosomal protein S2, pseudogene 13
Cpgi22717 X 52911849 to 52912657 808 CpG island CpG island 22717
Tssr160945 X 52912208 to 52912220 12 + TSS region transcription start site region 160945
Tssr160946 X 52912232 to 52912361 129 + TSS region transcription start site region 160946
Phf6 X 52912266 to 52956943 44677 + protein coding gene PHD finger protein 6
Tssr160947 X 52912367 to 52912380 13 + TSS region transcription start site region 160947
Tssr163375 X 52913147 to 52913156 9 - TSS region transcription start site region 163375
Tssr160948 X 52913475 to 52913498 23 + TSS region transcription start site region 160948
Tssr160949 X 52926949 to 52926963 14 + TSS region transcription start site region 160949
Tssr160950 X 52926975 to 52927002 27 + TSS region transcription start site region 160950
Tssr160951 X 52927004 to 52927015 11 + TSS region transcription start site region 160951
Tssr160952 X 52927022 to 52927034 12 + TSS region transcription start site region 160952
DXMit22 X 52983371 to 52983614 243 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 22
Cpgi22718 X 52987975 to 52988800 825 CpG island CpG island 22718
Tssr160953 X 52988075 to 52988078 3 + TSS region transcription start site region 160953
Tssr160954 X 52988082 to 52988115 33 + TSS region transcription start site region 160954
Tssr160955 X 52988119 to 52988148 29 + TSS region transcription start site region 160955
Hprt X 52988137 to 53021659 33522 + protein coding gene hypoxanthine guanine phosphoribosyl transferase
Tssr160956 X 52988155 to 52988199 44 + TSS region transcription start site region 160956
Tssr160957 X 52988209 to 52988211 2 + TSS region transcription start site region 160957
Tssr160958 X 53002158 to 53002185 27 + TSS region transcription start site region 160958
Tssr160959 X 53008663 to 53008693 30 + TSS region transcription start site region 160959
Tssr160960 X 53016358 to 53016404 46 + TSS region transcription start site region 160960
Tssr160961 X 53020095 to 53020122 27 + TSS region transcription start site region 160961
DXMit23 X 53029767 to 53030015 248 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 23
Tssr5620 X 53039860 to 53039872 12 + TSS region transcription start site region 5620
Mir450b X 53047997 to 53048078 81 - miRNA gene microRNA 450b
Mirc47 X 53047997 to 53048367 370 complex/cluster/region microRNA cluster 47, including Mir450b through Mir450a-2
Mir450-1 X 53048154 to 53048244 90 - miRNA gene microRNA 450-1
Mir450-2 X 53048299 to 53048367 68 - miRNA gene microRNA 450-2
Mir542 X 53049403 to 53049487 84 - miRNA gene microRNA 542
Gm28730 X 53051194 to 53053159 1965 - lincRNA gene predicted gene 28730
Mirc24 X 53053255 to 53054349 1094 complex/cluster/region microRNA cluster 24, including Mir351 through Mir322
Mir351 X 53053255 to 53053353 98 - miRNA gene microRNA 351
Tssr163376 X 53053271 to 53053275 4 - TSS region transcription start site region 163376
Mir503 X 53053984 to 53054054 70 - miRNA gene microRNA 503
Mir322 X 53054255 to 53054349 94 - miRNA gene microRNA 322
C430049B03Rik X 53055046 to 53057190 2144 - lncRNA gene RIKEN cDNA C430049B03 gene
Tssr163377 X 53055376 to 53055391 15 - TSS region transcription start site region 163377
Cpgi22719 X 53056738 to 53057503 765 CpG island CpG island 22719
Tssr163378 X 53057183 to 53057200 17 - TSS region transcription start site region 163378
Gm35988 X 53063860 to 53167728 103868 + lncRNA gene predicted gene, 35988
Plac1 X 53069995 to 53240111 170116 - protein coding gene placental specific protein 1
Tssr163379 X 53070464 to 53070490 26 - TSS region transcription start site region 163379
Tssr163380 X 53070567 to 53070578 11 - TSS region transcription start site region 163380
Tssr163381 X 53070651 to 53070669 18 - TSS region transcription start site region 163381
DXJti2 X 53075906 to 53076359 453 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 2
DXDcr1 X 53097215 to 53097310 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 1
DXJti3 X 53102885 to 53103171 286 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 3
Tssr163382 X 53114362 to 53114368 6 - TSS region transcription start site region 163382
Tssr163383 X 53114392 to 53114412 20 - TSS region transcription start site region 163383
Tssr163384 X 53114509 to 53114524 15 - TSS region transcription start site region 163384
Tssr163385 X 53114555 to 53114566 11 - TSS region transcription start site region 163385
Tssr163386 X 53121704 to 53121754 50 - TSS region transcription start site region 163386
DXMit159 X 53170226 to 53170319 93 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 159
Tssr163387 X 53209774 to 53209800 26 - TSS region transcription start site region 163387
Tssr163388 X 53209820 to 53209834 14 - TSS region transcription start site region 163388
DXMit91 X 53223092 to 53223239 147 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 91
Tssr163389 X 53240086 to 53240098 12 - TSS region transcription start site region 163389
Tssr163390 X 53240101 to 53240107 6 - TSS region transcription start site region 163390
Fam122b X 53243415 to 53269805 26390 - protein coding gene family with sequence similarity 122, member B
Tssr163391 X 53266297 to 53266327 30 - TSS region transcription start site region 163391
Tssr163392 X 53269022 to 53269068 46 - TSS region transcription start site region 163392
Cpgi22720 X 53269451 to 53269677 226 CpG island CpG island 22720
Tssr163393 X 53269786 to 53269858 72 - TSS region transcription start site region 163393
Tssr160962 X 53273418 to 53273429 11 + TSS region transcription start site region 160962
Fam122c X 53273424 to 53331185 57761 + protein coding gene family with sequence similarity 122, member C
Tssr160963 X 53273445 to 53273455 10 + TSS region transcription start site region 160963
Gm23718 X 53306177 to 53306483 306 + unclassified non-coding RNA gene predicted gene, 23718
Gm14585 X 53314533 to 53315166 633 + pseudogene predicted gene 14585
DXMit68 X 53323323 to 53323450 127 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 68
Lvic5 X 53323323 to 63983961 10660638 QTL liver iron content 5
Pubt1 X 53323323 to 62836890 9513567 QTL pubertal timing 1
Mospd1 X 53344598 to 53370502 25904 - protein coding gene motile sperm domain containing 1
Tssr163394 X 53370442 to 53370466 24 - TSS region transcription start site region 163394
Tssr163395 X 53370470 to 53370501 31 - TSS region transcription start site region 163395
Tssr163396 X 53370513 to 53370528 15 - TSS region transcription start site region 163396
Tssr163397 X 53370553 to 53370564 11 - TSS region transcription start site region 163397
Gm14584 X 53418331 to 53418967 636 + pseudogene predicted gene 14584
Etd X 53434918 to 53443576 8658 + protein coding gene embryonic testis differentiation
Tssr160964 X 53434944 to 53434949 5 + TSS region transcription start site region 160964
Tssr160965 X 53434952 to 53434972 20 + TSS region transcription start site region 160965
Tssr160966 X 53434989 to 53435015 26 + TSS region transcription start site region 160966
Gm36046 X 53459784 to 53464672 4888 + lncRNA gene predicted gene, 36046
Tssr5621 X 53460314 to 53460325 11 + TSS region transcription start site region 5621
Gm14597 X 53577073 to 53580003 2930 - protein coding gene predicted gene 14597