Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:52452563-53034593

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpc3 X 52272426 to 52613950 341524 - protein coding gene glypican 3
Tssr163361 X 52541994 to 52541999 5 - TSS region transcription start site region 163361
Tssr163362 X 52543191 to 52543195 4 - TSS region transcription start site region 163362
Tssr163363 X 52548758 to 52548763 5 - TSS region transcription start site region 163363
Tssr163364 X 52569119 to 52569121 2 - TSS region transcription start site region 163364
A630012P03Rik X 52575843 to 52619047 43204 + antisense lncRNA gene RIKEN cDNA A630012P03 gene
Tssr163365 X 52578138 to 52578142 4 - TSS region transcription start site region 163365
Tssr163366 X 52582921 to 52582951 30 - TSS region transcription start site region 163366
Cpgi22715 X 52613372 to 52614435 1063 CpG island CpG island 22715
Tssr163367 X 52613897 to 52613910 13 - TSS region transcription start site region 163367
Tssr163368 X 52613913 to 52613924 11 - TSS region transcription start site region 163368
Tssr163369 X 52613936 to 52613979 43 - TSS region transcription start site region 163369
Tssr163370 X 52614217 to 52614228 11 - TSS region transcription start site region 163370
Tssr163371 X 52614239 to 52614260 21 - TSS region transcription start site region 163371
Mirc2 X 52741693 to 52742567 874 complex/cluster/region microRNA cluster 2, including Mir363 through Mir106a
Mir363 X 52741693 to 52741767 74 - miRNA gene microRNA 363
Mir92-2 X 52741838 to 52741928 90 - miRNA gene microRNA 92-2
Mir19b-2 X 52741983 to 52742066 83 - miRNA gene microRNA 19b-2
Mir20b X 52742113 to 52742192 79 - miRNA gene microRNA 20b
Mir18b X 52742331 to 52742413 82 - miRNA gene microRNA 18b
Mir106a X 52742503 to 52742567 64 - miRNA gene microRNA 106a
Kis2 X 52742563 to 52744593 2030 - lncRNA gene Kaplan integration site 2
Tssr163372 X 52743891 to 52743918 27 - TSS region transcription start site region 163372
Cpgi22716 X 52744247 to 52744660 413 CpG island CpG island 22716
Tssr163373 X 52744583 to 52744598 15 - TSS region transcription start site region 163373
Tssr160936 X 52760425 to 52760434 9 + TSS region transcription start site region 160936
Gm42407 X 52760995 to 52763973 2978 + lncRNA gene predicted gene, 42407
Gm14586 X 52772342 to 52772749 407 - pseudogene predicted gene 14586
Tssr163374 X 52772763 to 52772774 11 - TSS region transcription start site region 163374
Gm7851 X 52782694 to 52783016 322 - pseudogene predicted gene 7851
Tssr160937 X 52788286 to 52788296 10 + TSS region transcription start site region 160937
Tssr160938 X 52788316 to 52788319 3 + TSS region transcription start site region 160938
Tssr160939 X 52788336 to 52788348 12 + TSS region transcription start site region 160939
Tssr160940 X 52791078 to 52791099 21 + TSS region transcription start site region 160940
Tssr160941 X 52791160 to 52791173 13 + TSS region transcription start site region 160941
Tssr160942 X 52791179 to 52791201 22 + TSS region transcription start site region 160942
Ccdc160 X 52791200 to 52799468 8268 + protein coding gene coiled-coil domain containing 160
Tssr160943 X 52791204 to 52791231 27 + TSS region transcription start site region 160943
Tssr160944 X 52793041 to 52793076 35 + TSS region transcription start site region 160944
Gm14607 X 52878239 to 52878726 487 + pseudogene predicted gene 14607
Gm6539 X 52879315 to 52880255 940 + pseudogene predicted gene 6539
Rps2-ps13 X 52898588 to 52899469 881 + pseudogene ribosomal protein S2, pseudogene 13
Cpgi22717 X 52911849 to 52912657 808 CpG island CpG island 22717
Tssr160945 X 52912208 to 52912220 12 + TSS region transcription start site region 160945
Tssr160946 X 52912232 to 52912361 129 + TSS region transcription start site region 160946
Phf6 X 52912266 to 52956943 44677 + protein coding gene PHD finger protein 6
Tssr160947 X 52912367 to 52912380 13 + TSS region transcription start site region 160947
Tssr163375 X 52913147 to 52913156 9 - TSS region transcription start site region 163375
Tssr160948 X 52913475 to 52913498 23 + TSS region transcription start site region 160948
Tssr160949 X 52926949 to 52926963 14 + TSS region transcription start site region 160949
Tssr160950 X 52926975 to 52927002 27 + TSS region transcription start site region 160950
Tssr160951 X 52927004 to 52927015 11 + TSS region transcription start site region 160951
Tssr160952 X 52927022 to 52927034 12 + TSS region transcription start site region 160952
DXMit22 X 52983371 to 52983614 243 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 22
Cpgi22718 X 52987975 to 52988800 825 CpG island CpG island 22718
Tssr160953 X 52988075 to 52988078 3 + TSS region transcription start site region 160953
Tssr160954 X 52988082 to 52988115 33 + TSS region transcription start site region 160954
Tssr160955 X 52988119 to 52988148 29 + TSS region transcription start site region 160955
Hprt X 52988137 to 53021659 33522 + protein coding gene hypoxanthine guanine phosphoribosyl transferase
Tssr160956 X 52988155 to 52988199 44 + TSS region transcription start site region 160956
Tssr160957 X 52988209 to 52988211 2 + TSS region transcription start site region 160957
Tssr160958 X 53002158 to 53002185 27 + TSS region transcription start site region 160958
Tssr160959 X 53008663 to 53008693 30 + TSS region transcription start site region 160959
Tssr160960 X 53016358 to 53016404 46 + TSS region transcription start site region 160960
Tssr160961 X 53020095 to 53020122 27 + TSS region transcription start site region 160961
DXMit23 X 53029767 to 53030015 248 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 23