Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:52438897-52788910

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpc3 X 52272426 to 52613950 341524 - protein coding gene glypican 3
Tssr163361 X 52541994 to 52541999 5 - TSS region transcription start site region 163361
Tssr163362 X 52543191 to 52543195 4 - TSS region transcription start site region 163362
Tssr163363 X 52548758 to 52548763 5 - TSS region transcription start site region 163363
Tssr163364 X 52569119 to 52569121 2 - TSS region transcription start site region 163364
A630012P03Rik X 52575843 to 52619047 43204 + antisense lncRNA gene RIKEN cDNA A630012P03 gene
Tssr163365 X 52578138 to 52578142 4 - TSS region transcription start site region 163365
Tssr163366 X 52582921 to 52582951 30 - TSS region transcription start site region 163366
Cpgi22715 X 52613372 to 52614435 1063 CpG island CpG island 22715
Tssr163367 X 52613897 to 52613910 13 - TSS region transcription start site region 163367
Tssr163368 X 52613913 to 52613924 11 - TSS region transcription start site region 163368
Tssr163369 X 52613936 to 52613979 43 - TSS region transcription start site region 163369
Tssr163370 X 52614217 to 52614228 11 - TSS region transcription start site region 163370
Tssr163371 X 52614239 to 52614260 21 - TSS region transcription start site region 163371
Mirc2 X 52741693 to 52742567 874 complex/cluster/region microRNA cluster 2, including Mir363 through Mir106a
Mir363 X 52741693 to 52741767 74 - miRNA gene microRNA 363
Mir92-2 X 52741838 to 52741928 90 - miRNA gene microRNA 92-2
Mir19b-2 X 52741983 to 52742066 83 - miRNA gene microRNA 19b-2
Mir20b X 52742113 to 52742192 79 - miRNA gene microRNA 20b
Mir18b X 52742331 to 52742413 82 - miRNA gene microRNA 18b
Mir106a X 52742503 to 52742567 64 - miRNA gene microRNA 106a
Kis2 X 52742563 to 52744593 2030 - lncRNA gene Kaplan integration site 2
Tssr163372 X 52743891 to 52743918 27 - TSS region transcription start site region 163372
Cpgi22716 X 52744247 to 52744660 413 CpG island CpG island 22716
Tssr163373 X 52744583 to 52744598 15 - TSS region transcription start site region 163373
Tssr160936 X 52760425 to 52760434 9 + TSS region transcription start site region 160936
Gm42407 X 52760995 to 52763973 2978 + lncRNA gene predicted gene, 42407
Gm14586 X 52772342 to 52772749 407 - pseudogene predicted gene 14586
Tssr163374 X 52772763 to 52772774 11 - TSS region transcription start site region 163374
Gm7851 X 52782694 to 52783016 322 - pseudogene predicted gene 7851
Tssr160937 X 52788286 to 52788296 10 + TSS region transcription start site region 160937
Tssr160938 X 52788316 to 52788319 3 + TSS region transcription start site region 160938
Tssr160939 X 52788336 to 52788348 12 + TSS region transcription start site region 160939