Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:50867088-52498754

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stk26 X 50841174 to 50893103 51929 + protein coding gene serine/threonine kinase 26
DXMit192 X 50876243 to 50876365 122 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 192
Frmd7 X 50895180 to 50942710 47530 - protein coding gene FERM domain containing 7
DXMit83 X 50924915 to 50925064 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 83
Tssr163316 X 50942739 to 50942758 19 - TSS region transcription start site region 163316
Tssr163317 X 50942762 to 50942773 11 - TSS region transcription start site region 163317
Tssr163318 X 50942802 to 50942809 7 - TSS region transcription start site region 163318
Tssr163319 X 50943603 to 50943622 19 - TSS region transcription start site region 163319
Rap2c X 51003912 to 51018018 14106 - protein coding gene RAP2C, member of RAS oncogene family
Cpgi22711 X 51017883 to 51019077 1194 CpG island CpG island 22711
Tssr163320 X 51017908 to 51017923 15 - TSS region transcription start site region 163320
Tssr163321 X 51017924 to 51017939 15 - TSS region transcription start site region 163321
Tssr163322 X 51017967 to 51018009 42 - TSS region transcription start site region 163322
Tssr163323 X 51018011 to 51018032 21 - TSS region transcription start site region 163323
Tssr163324 X 51018040 to 51018064 24 - TSS region transcription start site region 163324
Tssr163325 X 51018609 to 51018683 74 - TSS region transcription start site region 163325
Tssr163326 X 51018717 to 51018746 29 - TSS region transcription start site region 163326
Tssr163327 X 51020043 to 51020077 34 - TSS region transcription start site region 163327
Tssr160934 X 51020870 to 51020880 10 + TSS region transcription start site region 160934
Gm5387 X 51043963 to 51044819 856 + pseudogene predicted gene 5387
MHAa97h7 X 51086637 to 51086793 156 DNA segment DNA segment, MHAa97h7
Tssr163328 X 51115943 to 51115965 22 - TSS region transcription start site region 163328
Tssr163329 X 51116104 to 51116107 3 - TSS region transcription start site region 163329
Mbnl3 X 51117269 to 51206532 89263 - protein coding gene muscleblind like splicing factor 3
Tssr163330 X 51130165 to 51130198 33 - TSS region transcription start site region 163330
Tssr163331 X 51146414 to 51146416 2 - TSS region transcription start site region 163331
Cpgi22712 X 51204698 to 51206257 1559 CpG island CpG island 22712
Tssr163332 X 51204775 to 51204788 13 - TSS region transcription start site region 163332
Tssr163333 X 51205616 to 51205638 22 - TSS region transcription start site region 163333
Tssr163334 X 51205640 to 51205671 31 - TSS region transcription start site region 163334
Tssr163335 X 51205773 to 51205839 66 - TSS region transcription start site region 163335
Tssr163336 X 51205852 to 51205874 22 - TSS region transcription start site region 163336
Tssr163337 X 51205878 to 51205900 22 - TSS region transcription start site region 163337
Tssr163338 X 51205902 to 51205931 29 - TSS region transcription start site region 163338
Tssr163339 X 51206017 to 51206033 16 - TSS region transcription start site region 163339
Gm7834 X 51212511 to 51212947 436 - pseudogene predicted gene 7834
Gm5388 X 51218877 to 51219993 1116 - pseudogene predicted gene 5388
Gm23417 X 51219110 to 51219192 82 - miRNA gene predicted gene, 23417
Tssr163340 X 51220067 to 51220074 7 - TSS region transcription start site region 163340
Gm14621 X 51238844 to 51239532 688 - pseudogene predicted gene 14621
Hs6st2 X 51387212 to 51681856 294644 - protein coding gene heparan sulfate 6-O-sulfotransferase 2
Tssr163341 X 51450258 to 51450261 3 - TSS region transcription start site region 163341
DXMit106 X 51613679 to 51613763 84 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 106
Gm14581 X 51629490 to 51629687 197 - pseudogene predicted gene 14581
Cpgi22713 X 51679888 to 51681568 1680 CpG island CpG island 22713
Tssr163342 X 51681251 to 51681263 12 - TSS region transcription start site region 163342
Tssr163343 X 51681333 to 51681365 32 - TSS region transcription start site region 163343
Tssr163344 X 51681366 to 51681394 28 - TSS region transcription start site region 163344
Tssr163345 X 51681450 to 51681461 11 - TSS region transcription start site region 163345
Gm35727 X 51681824 to 51864066 182242 + lncRNA gene predicted gene, 35727
2900011F02Rik X 51682088 to 51683754 1666 unclassified gene RIKEN cDNA 2900011F02 gene
Obq6 X 51683498 to 71391145 19707647 QTL obesity QTL 6
DXMit166 X 51683498 to 51683611 113 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 166
Usp26 X 51753959 to 51801233 47274 - protein coding gene ubiquitin specific peptidase 26
Tssr160935 X 51792098 to 51792104 6 + TSS region transcription start site region 160935
Tssr163346 X 51801078 to 51801083 5 - TSS region transcription start site region 163346
Gm7840 X 51840083 to 51840615 532 - pseudogene predicted gene 7840
Tssr163347 X 51840614 to 51840617 3 - TSS region transcription start site region 163347
Gm22539 X 51844685 to 51844801 116 + snoRNA gene predicted gene, 22539
1700080O16Rik X 51968695 to 51972772 4077 - protein coding gene RIKEN cDNA 1700080O16 gene
Tssr163348 X 51972771 to 51972798 27 - TSS region transcription start site region 163348
Gm35790 X 51972854 to 51974700 1846 + lncRNA gene predicted gene, 35790
Tssr163349 X 52052282 to 52052287 5 - TSS region transcription start site region 163349
Tssr163350 X 52052517 to 52052532 15 - TSS region transcription start site region 163350
Gpc4 X 52053021 to 52165252 112231 - protein coding gene glypican 4
Tssr163351 X 52053101 to 52053125 24 - TSS region transcription start site region 163351
Tssr163352 X 52053156 to 52053167 11 - TSS region transcription start site region 163352
Tssr163353 X 52053444 to 52053448 4 - TSS region transcription start site region 163353
Cpgi22714 X 52164263 to 52165565 1302 CpG island CpG island 22714
Tssr163354 X 52165269 to 52165280 11 - TSS region transcription start site region 163354
Tssr163355 X 52165312 to 52165335 23 - TSS region transcription start site region 163355
Tssr163356 X 52165345 to 52165362 17 - TSS region transcription start site region 163356
Gpc3 X 52272426 to 52613950 341524 - protein coding gene glypican 3
Tssr163357 X 52272672 to 52272694 22 - TSS region transcription start site region 163357
Gm14582 X 52296181 to 52333679 37498 + antisense lncRNA gene predicted gene 14582
Tssr163358 X 52310107 to 52310111 4 - TSS region transcription start site region 163358
D230050J18Rik X 52350174 to 52351809 1635 unclassified gene RIKEN cDNA D230050J18 gene
Mir6384 X 52378121 to 52378181 60 - miRNA gene microRNA 6384
Tssr163359 X 52397186 to 52397201 15 - TSS region transcription start site region 163359
Mir717 X 52422407 to 52422515 108 - miRNA gene microRNA 717
DXJti1 X 52424230 to 52424330 100 DNA segment DNA segment, Chr X, Japan Tobacco Inc. 1
Tssr163360 X 52428836 to 52428851 15 - TSS region transcription start site region 163360