Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:49340487-51830491

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm14696 X 49313319 to 49345237 31918 - lincRNA gene predicted gene 14696
Gm14697 X 49332409 to 49447972 115563 - antisense lncRNA gene predicted gene 14697
Tssr160922 X 49463926 to 49463973 47 + TSS region transcription start site region 160922
Arhgap36 X 49463945 to 49500244 36299 + protein coding gene Rho GTPase activating protein 36
Cpgi22705 X 49470500 to 49470904 404 CpG island CpG island 22705
Tssr160923 X 49470532 to 49470548 16 + TSS region transcription start site region 160923
Tssr160924 X 49470555 to 49470579 24 + TSS region transcription start site region 160924
Cpgi22706 X 49480296 to 49480590 294 CpG island CpG island 22706
Tssr160925 X 49485088 to 49485122 34 + TSS region transcription start site region 160925
Tssr160926 X 49493105 to 49493114 9 + TSS region transcription start site region 160926
Tssr160927 X 49493116 to 49493139 23 + TSS region transcription start site region 160927
Tssr160928 X 49493142 to 49493174 32 + TSS region transcription start site region 160928
Cpgi22707 X 49493655 to 49494335 680 CpG island CpG island 22707
Cpgi22708 X 49495270 to 49495469 199 CpG island CpG island 22708
Tssr160929 X 49499056 to 49499068 12 + TSS region transcription start site region 160929
Gm15037 X 49560626 to 49560884 258 + pseudogene predicted gene 15037
Gm18695 X 49590212 to 49591589 1377 - pseudogene predicted gene, 18695
Gm14719 X 49660960 to 49661299 339 + pseudogene predicted gene 14719
Olfr1320 X 49683504 to 49684463 959 + protein coding gene olfactory receptor 1320
Olfr1321 X 49726973 to 49727932 959 - protein coding gene olfactory receptor 1321
Tssr163308 X 49779183 to 49779194 11 - TSS region transcription start site region 163308
Igsf1 X 49782536 to 49797749 15213 - protein coding gene immunoglobulin superfamily, member 1
Tssr163309 X 49787633 to 49787648 15 - TSS region transcription start site region 163309
Tssr163310 X 49788204 to 49788236 32 - TSS region transcription start site region 163310
Tssr163311 X 49797700 to 49797755 55 - TSS region transcription start site region 163311
Tssr163312 X 49797870 to 49797900 30 - TSS region transcription start site region 163312
n-R5s6 X 49879307 to 49879394 87 + rRNA gene nuclear encoded rRNA 5S 6
Olfr1322 X 49885469 to 49886401 932 - protein coding gene olfactory receptor 1322
Gm15033 X 49944635 to 49945307 672 + pseudogene predicted gene 15033
Aggr2 X 49982290 to 53170319 3188029 QTL aggression 2
DXMit105 X 49982290 to 49982436 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 105
Olfr1323 X 50009306 to 50010235 929 - protein coding gene olfactory receptor 1323
Gm23385 X 50022621 to 50022915 294 + unclassified non-coding RNA gene predicted gene, 23385
Gm7803 X 50325518 to 50326532 1014 - pseudogene predicted gene 7803
DXMit225 X 50329245 to 50329335 90 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 225
DXMit225.2 X 50329391 to 50329509 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 225.2
Gm14612 X 50373154 to 50374029 875 + pseudogene predicted gene 14612
Cpgi22709 X 50373806 to 50374025 219 CpG island CpG island 22709
Gm22288 X 50405813 to 50405919 106 + snRNA gene predicted gene, 22288
Olfr1324 X 50425496 to 50426494 998 - protein coding gene olfactory receptor 1324
Tssr160930 X 50537331 to 50537372 41 + TSS region transcription start site region 160930
Gm35612 X 50537389 to 50562598 25209 + lncRNA gene predicted gene, 35612
Gm14620 X 50542402 to 50542784 382 - pseudogene predicted gene 14620
Firre X 50563120 to 50635321 72201 - lncRNA gene functional intergenic repeating RNA element
Tssr163313 X 50585487 to 50585491 4 - TSS region transcription start site region 163313
Tssr163314 X 50635247 to 50635272 25 - TSS region transcription start site region 163314
Tssr163315 X 50635283 to 50635328 45 - TSS region transcription start site region 163315
Tssr160931 X 50827558 to 50827585 27 + TSS region transcription start site region 160931
Stk26 X 50841174 to 50893103 51929 + protein coding gene serine/threonine kinase 26
Cpgi22710 X 50841197 to 50842000 803 CpG island CpG island 22710
Tssr160932 X 50841389 to 50841421 32 + TSS region transcription start site region 160932
Tssr160933 X 50841434 to 50841449 15 + TSS region transcription start site region 160933
DXMit192 X 50876243 to 50876365 122 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 192
Frmd7 X 50895180 to 50942710 47530 - protein coding gene FERM domain containing 7
DXMit83 X 50924915 to 50925064 149 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 83
Tssr163316 X 50942739 to 50942758 19 - TSS region transcription start site region 163316
Tssr163317 X 50942762 to 50942773 11 - TSS region transcription start site region 163317
Tssr163318 X 50942802 to 50942809 7 - TSS region transcription start site region 163318
Tssr163319 X 50943603 to 50943622 19 - TSS region transcription start site region 163319
Rap2c X 51003912 to 51018018 14106 - protein coding gene RAP2C, member of RAS oncogene family
Cpgi22711 X 51017883 to 51019077 1194 CpG island CpG island 22711
Tssr163320 X 51017908 to 51017923 15 - TSS region transcription start site region 163320
Tssr163321 X 51017924 to 51017939 15 - TSS region transcription start site region 163321
Tssr163322 X 51017967 to 51018009 42 - TSS region transcription start site region 163322
Tssr163323 X 51018011 to 51018032 21 - TSS region transcription start site region 163323
Tssr163324 X 51018040 to 51018064 24 - TSS region transcription start site region 163324
Tssr163325 X 51018609 to 51018683 74 - TSS region transcription start site region 163325
Tssr163326 X 51018717 to 51018746 29 - TSS region transcription start site region 163326
Tssr163327 X 51020043 to 51020077 34 - TSS region transcription start site region 163327
Tssr160934 X 51020870 to 51020880 10 + TSS region transcription start site region 160934
Gm5387 X 51043963 to 51044819 856 + pseudogene predicted gene 5387
MHAa97h7 X 51086637 to 51086793 156 DNA segment DNA segment, MHAa97h7
Tssr163328 X 51115943 to 51115965 22 - TSS region transcription start site region 163328
Tssr163329 X 51116104 to 51116107 3 - TSS region transcription start site region 163329
Mbnl3 X 51117269 to 51206532 89263 - protein coding gene muscleblind like splicing factor 3
Tssr163330 X 51130165 to 51130198 33 - TSS region transcription start site region 163330
Tssr163331 X 51146414 to 51146416 2 - TSS region transcription start site region 163331
Cpgi22712 X 51204698 to 51206257 1559 CpG island CpG island 22712
Tssr163332 X 51204775 to 51204788 13 - TSS region transcription start site region 163332
Tssr163333 X 51205616 to 51205638 22 - TSS region transcription start site region 163333
Tssr163334 X 51205640 to 51205671 31 - TSS region transcription start site region 163334
Tssr163335 X 51205773 to 51205839 66 - TSS region transcription start site region 163335
Tssr163336 X 51205852 to 51205874 22 - TSS region transcription start site region 163336
Tssr163337 X 51205878 to 51205900 22 - TSS region transcription start site region 163337
Tssr163338 X 51205902 to 51205931 29 - TSS region transcription start site region 163338
Tssr163339 X 51206017 to 51206033 16 - TSS region transcription start site region 163339
Gm7834 X 51212511 to 51212947 436 - pseudogene predicted gene 7834
Gm5388 X 51218877 to 51219993 1116 - pseudogene predicted gene 5388
Gm23417 X 51219110 to 51219192 82 - miRNA gene predicted gene, 23417
Tssr163340 X 51220067 to 51220074 7 - TSS region transcription start site region 163340
Gm14621 X 51238844 to 51239532 688 - pseudogene predicted gene 14621
Hs6st2 X 51387212 to 51681856 294644 - protein coding gene heparan sulfate 6-O-sulfotransferase 2
Tssr163341 X 51450258 to 51450261 3 - TSS region transcription start site region 163341
DXMit106 X 51613679 to 51613763 84 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 106
Gm14581 X 51629490 to 51629687 197 - pseudogene predicted gene 14581
Cpgi22713 X 51679888 to 51681568 1680 CpG island CpG island 22713
Tssr163342 X 51681251 to 51681263 12 - TSS region transcription start site region 163342
Tssr163343 X 51681333 to 51681365 32 - TSS region transcription start site region 163343
Tssr163344 X 51681366 to 51681394 28 - TSS region transcription start site region 163344
Tssr163345 X 51681450 to 51681461 11 - TSS region transcription start site region 163345
Gm35727 X 51681824 to 51864066 182242 + lncRNA gene predicted gene, 35727
2900011F02Rik X 51682088 to 51683754 1666 unclassified gene RIKEN cDNA 2900011F02 gene
DXMit166 X 51683498 to 51683611 113 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 166
Obq6 X 51683498 to 71391145 19707647 QTL obesity QTL 6
Usp26 X 51753959 to 51801233 47274 - protein coding gene ubiquitin specific peptidase 26
Tssr160935 X 51792098 to 51792104 6 + TSS region transcription start site region 160935
Tssr163346 X 51801078 to 51801083 5 - TSS region transcription start site region 163346