Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:49072290-50892436

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Enox2 X 49009707 to 49288244 278537 - protein coding gene ecto-NOX disulfide-thiol exchanger 2
Tssr163302 X 49084442 to 49084450 8 - TSS region transcription start site region 163302
Gm35210 X 49098922 to 49103638 4716 - pseudogene predicted gene, 35210
Gm15034 X 49158223 to 49158571 348 + pseudogene predicted gene 15034
Gm15036 X 49164908 to 49165307 399 + pseudogene predicted gene 15036
Tssr163303 X 49273655 to 49273667 12 - TSS region transcription start site region 163303
Tssr163304 X 49273757 to 49273768 11 - TSS region transcription start site region 163304
Tssr163305 X 49273808 to 49273819 11 - TSS region transcription start site region 163305
Tssr163306 X 49288195 to 49288218 23 - TSS region transcription start site region 163306
Gm39513 X 49288215 to 49315605 27390 + lncRNA gene predicted gene, 39513
Tssr163307 X 49288229 to 49288265 36 - TSS region transcription start site region 163307
Gm14696 X 49313319 to 49345237 31918 - lincRNA gene predicted gene 14696
Gm14697 X 49332409 to 49447972 115563 - antisense lncRNA gene predicted gene 14697
Tssr160922 X 49463926 to 49463973 47 + TSS region transcription start site region 160922
Arhgap36 X 49463945 to 49500244 36299 + protein coding gene Rho GTPase activating protein 36
Cpgi22705 X 49470500 to 49470904 404 CpG island CpG island 22705
Tssr160923 X 49470532 to 49470548 16 + TSS region transcription start site region 160923
Tssr160924 X 49470555 to 49470579 24 + TSS region transcription start site region 160924
Cpgi22706 X 49480296 to 49480590 294 CpG island CpG island 22706
Tssr160925 X 49485088 to 49485122 34 + TSS region transcription start site region 160925
Tssr160926 X 49493105 to 49493114 9 + TSS region transcription start site region 160926
Tssr160927 X 49493116 to 49493139 23 + TSS region transcription start site region 160927
Tssr160928 X 49493142 to 49493174 32 + TSS region transcription start site region 160928
Cpgi22707 X 49493655 to 49494335 680 CpG island CpG island 22707
Cpgi22708 X 49495270 to 49495469 199 CpG island CpG island 22708
Tssr160929 X 49499056 to 49499068 12 + TSS region transcription start site region 160929
Gm15037 X 49560626 to 49560884 258 + pseudogene predicted gene 15037
Gm18695 X 49590212 to 49591589 1377 - pseudogene predicted gene, 18695
Gm14719 X 49660960 to 49661299 339 + pseudogene predicted gene 14719
Olfr1320 X 49683504 to 49684463 959 + protein coding gene olfactory receptor 1320
Olfr1321 X 49726973 to 49727932 959 - protein coding gene olfactory receptor 1321
Tssr163308 X 49779183 to 49779194 11 - TSS region transcription start site region 163308
Igsf1 X 49782536 to 49797749 15213 - protein coding gene immunoglobulin superfamily, member 1
Tssr163309 X 49787633 to 49787648 15 - TSS region transcription start site region 163309
Tssr163310 X 49788204 to 49788236 32 - TSS region transcription start site region 163310
Tssr163311 X 49797700 to 49797755 55 - TSS region transcription start site region 163311
Tssr163312 X 49797870 to 49797900 30 - TSS region transcription start site region 163312
n-R5s6 X 49879307 to 49879394 87 + rRNA gene nuclear encoded rRNA 5S 6
Olfr1322 X 49885469 to 49886401 932 - protein coding gene olfactory receptor 1322
Gm15033 X 49944635 to 49945307 672 + pseudogene predicted gene 15033
Aggr2 X 49982290 to 53170319 3188029 QTL aggression 2
DXMit105 X 49982290 to 49982436 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 105
Olfr1323 X 50009306 to 50010235 929 - protein coding gene olfactory receptor 1323
Gm23385 X 50022621 to 50022915 294 + unclassified non-coding RNA gene predicted gene, 23385
Gm7803 X 50325518 to 50326532 1014 - pseudogene predicted gene 7803
DXMit225 X 50329245 to 50329335 90 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 225
DXMit225.2 X 50329391 to 50329509 118 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 225.2
Gm14612 X 50373154 to 50374029 875 + pseudogene predicted gene 14612
Cpgi22709 X 50373806 to 50374025 219 CpG island CpG island 22709
Gm22288 X 50405813 to 50405919 106 + snRNA gene predicted gene, 22288
Olfr1324 X 50425496 to 50426494 998 - protein coding gene olfactory receptor 1324
Tssr160930 X 50537331 to 50537372 41 + TSS region transcription start site region 160930
Gm35612 X 50537389 to 50562598 25209 + lncRNA gene predicted gene, 35612
Gm14620 X 50542402 to 50542784 382 - pseudogene predicted gene 14620
Firre X 50563120 to 50635321 72201 - lncRNA gene functional intergenic repeating RNA element
Tssr163313 X 50585487 to 50585491 4 - TSS region transcription start site region 163313
Tssr163314 X 50635247 to 50635272 25 - TSS region transcription start site region 163314
Tssr163315 X 50635283 to 50635328 45 - TSS region transcription start site region 163315
Tssr160931 X 50827558 to 50827585 27 + TSS region transcription start site region 160931
Stk26 X 50841174 to 50893103 51929 + protein coding gene serine/threonine kinase 26
Cpgi22710 X 50841197 to 50842000 803 CpG island CpG island 22710
Tssr160932 X 50841389 to 50841421 32 + TSS region transcription start site region 160932
Tssr160933 X 50841434 to 50841449 15 + TSS region transcription start site region 160933
DXMit192 X 50876243 to 50876365 122 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 192