Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:48388585-48858919

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fnld X 36795651 to 48683972 11888321 heritable phenotypic marker faint-lined
Bcorl1 X 48341358 to 48408049 66691 + protein coding gene BCL6 co-repressor-like 1
Tssr160901 X 48400525 to 48400541 16 + TSS region transcription start site region 160901
Cpgi22697 X 48409879 to 48410266 387 CpG island CpG island 22697
Elf4 X 48411049 to 48463132 52083 - protein coding gene E74-like factor 4 (ets domain transcription factor)
Tssr163285 X 48419148 to 48419162 14 - TSS region transcription start site region 163285
Tssr163286 X 48429231 to 48429236 5 - TSS region transcription start site region 163286
5033418A18Rik X 48441481 to 48443110 1629 unclassified gene RIKEN cDNA 5033418A18 gene
Cpgi22698 X 48452889 to 48454670 1781 CpG island CpG island 22698
Tssr163287 X 48453741 to 48453762 21 - TSS region transcription start site region 163287
Tssr163288 X 48454152 to 48454193 41 - TSS region transcription start site region 163288
Tssr163289 X 48454222 to 48454243 21 - TSS region transcription start site region 163289
Tssr163290 X 48454273 to 48454301 28 - TSS region transcription start site region 163290
Tssr163291 X 48454312 to 48454325 13 - TSS region transcription start site region 163291
Cpgi22699 X 48462712 to 48463188 476 CpG island CpG island 22699
Tssr163292 X 48463113 to 48463158 45 - TSS region transcription start site region 163292
Aifm1 X 48474944 to 48513563 38619 - protein coding gene apoptosis-inducing factor, mitochondrion-associated 1
Cpgi22700 X 48513207 to 48513784 577 CpG island CpG island 22700
Tssr163293 X 48513385 to 48513438 53 - TSS region transcription start site region 163293
Tssr163294 X 48513444 to 48513459 15 - TSS region transcription start site region 163294
Tssr163295 X 48513518 to 48513565 47 - TSS region transcription start site region 163295
Gm39512 X 48513644 to 48516787 3143 + lncRNA gene predicted gene, 39512
Tssr160902 X 48513850 to 48513855 5 + TSS region transcription start site region 160902
Cpgi22701 X 48519227 to 48519751 524 CpG island CpG island 22701
Tssr160903 X 48519245 to 48519281 36 + TSS region transcription start site region 160903
Rab33a X 48519285 to 48530232 10947 + protein coding gene RAB33A, member RAS oncogene family
Tssr160904 X 48519412 to 48519474 62 + TSS region transcription start site region 160904
Tssr160905 X 48519476 to 48519523 47 + TSS region transcription start site region 160905
Tssr160906 X 48519524 to 48519538 14 + TSS region transcription start site region 160906
Tssr160907 X 48519540 to 48519558 18 + TSS region transcription start site region 160907
Tssr160908 X 48519781 to 48519790 9 + TSS region transcription start site region 160908
Zfp280c X 48541625 to 48594504 52879 - protein coding gene zinc finger protein 280C
Cpgi22702 X 48594095 to 48594647 552 CpG island CpG island 22702
Tssr163296 X 48594383 to 48594493 110 - TSS region transcription start site region 163296
Tssr163297 X 48594569 to 48594585 16 - TSS region transcription start site region 163297
Tssr163298 X 48594610 to 48594635 25 - TSS region transcription start site region 163298
Slc25a14 X 48623418 to 48662298 38880 + protein coding gene solute carrier family 25 (mitochondrial carrier, brain), member 14
Cpgi22703 X 48623585 to 48623919 334 CpG island CpG island 22703
Tssr160909 X 48623737 to 48623790 53 + TSS region transcription start site region 160909
Tssr160910 X 48623800 to 48623811 11 + TSS region transcription start site region 160910
Tssr160911 X 48624556 to 48624560 4 + TSS region transcription start site region 160911
Gm27828 X 48644340 to 48644458 118 + miRNA gene predicted gene, 27828
Gpr119 X 48667979 to 48674478 6499 - protein coding gene G-protein coupled receptor 119
DXMit82 X 48683839 to 48683972 133 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 82
Cpgi22704 X 48694956 to 48695409 453 CpG island CpG island 22704
Rbmx2 X 48695004 to 48710719 15715 + protein coding gene RNA binding motif protein, X-linked 2
Tssr160912 X 48695020 to 48695029 9 + TSS region transcription start site region 160912
Tssr160913 X 48695050 to 48695095 45 + TSS region transcription start site region 160913
Gm7770 X 48711566 to 48712535 969 + pseudogene predicted gene 7770
Gm595 X 48841466 to 48877713 36247 - protein coding gene predicted gene 595